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! scope="col" | Category | ! scope="col" | Category | ||
! scope="col" | Cluster | ! scope="col" | Cluster | ||
! scope="col" | Notes | |||
|- | |- | ||
|- | |- | ||
| [[ | | [[ARB]] || 5.3 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[Artemis]] || Release 8 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Bali-phy-Altix]] || 1.9.8 || Bioinformatics || || Altix || | ||
|- | |- | ||
| [[ | | [[Bali-phy-rcluster]] || 1.9.8 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[BEAST]] || 1.7.2 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[BEST Bayesian]] || 2.3.1 || Bioinformatics || || Bioinformatics || | ||
|- | |- | ||
| [[ | | [[BEST Binding]] || 1.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Bioconductor]] || 1.9 (compiled with R-2.4.0) || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[BioPerl-altix]] || 1.4 || Bioinformatics || || Altix || | ||
|- | |- | ||
| [[ | | [[BioPerl]] || 1.61 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[BioPython]] || 1.58 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[NCBI Blast-Altix]] || 2.2.20 is the last updated. older versions are also available. || Bioinformatics || || Altix || | ||
|- | |- | ||
| [[ | | [[NCBI Blast]] || 2.2.26 is the last updated. older versions are also available. || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[RCCBatchBlast]] || 4.0 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[Blat]] || 3.5 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[CAP3-Altix]] || Date - 04/15/2005 || Bioinformatics || || Altix || | |||
|- | |- | ||
| [[ | | [[CAP3-rcluster IOB]] || Date : 04/15/2005 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[ClustalW-Altix]] || 1.8.3 || Bioinformatics || || Altix || | ||
|- | |- | ||
| [[ | | [[ClustalW]] || 2.1 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[CONSEL]] || v0.20 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[EMBOSS-Altix]] || 6.0.1 (updated at 02/09/2008) || Bioinformatics || || Altix || | ||
|- | |- | ||
| [[ | | [[EMBOSS-rcluster]] || 6.2.0 (updated at 04/17/2010) || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[FASTA]] || 36 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[FIRE]] || 1.1 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[FitModel]] || 0.5.3 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[Gblocks-rcluster]] || 0.91b || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[GCG (Wisconsin Package)]] || 11.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Genezilla]] || 1.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Genome-Altix]] || Phred version: 0.020425.c || phrap version 1.080812 || || phd2fasta version: 0.990622.f || | ||
|- | |- | ||
| [[ | | [[Genome]] || Phred version: 0.071220.c || phrap version 0.990329 || || phd2fasta version: 0.990622.f || | ||
|- | |- | ||
| [[ | | [[Hmmer-Altix]] || v3.0.a1 || v2.3.2 || || v1.8 || | ||
|- | |- | ||
| [[ | | [[Hmmer]] || 3.0 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[IMa]] || May 06 || 2009 || || Bioinformatics || | ||
|- | |- | ||
| [[ | | [[indel-Seq-Gen]] || 2.02 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[iprscan (InterProScan)]] || 5.0 CR2 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[LUCY-Altix]] || 1.19 || Bioinformatics || || Altix || | ||
|- | |- | ||
| [[ | | [[LUCY-rcluster]] || 1.19 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[MDscan]] || 2004 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[MEME]] || 4.8.1 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[Migrate]] || 3.0.3 || 3.2.16 || || Bioinformatics || | ||
|- | |- | ||
| [[ | | [[MrBayes-altix]] || 3.1.2 || Bioinformatics || || Altix || | ||
|- | |- | ||
| [[ | | [[MrBayes]] || 3.1.2 || 3.2.1 || || Bioinformatics || | ||
|- | |- | ||
| [[ | | [[MSBlast]] || 2003 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[MUMmer]] || 3.22 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[MUSCLE-Altix]] || 3.6 || Bioinformatics || || Altix || | ||
|- | |- | ||
| [[ | | [[MUSCLE]] || 3.8.31 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[PAML]] || Latest version 4.4 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[Pfam_scan]] || 04282012 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[pfamDNASearch]] || 1.5 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[pftools]] || 2.3.5 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[PHYLIP]] || 3.6 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[PHYML]] || 20110919 || 20120412 || || Bioinformatics || | ||
|- | |- | ||
| [[ | | [[PolyBayes-Altix]] || 3.0 || Bioinformatics || || Altix || | ||
|- | |- | ||
| [[ | | [[PolyBayes-rcluster]] || 3.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[PSORTb]] || 3.0.2 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[RAxML]] || 04/26/2012 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[RECON]] || 1.05 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[RepeatFinder]] || n/a || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Repeatmasker]] || 3.3 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[RepeatScout]] || 1.05 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[Reputer]] || 2.74 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[SSAHA2]] || 1.0.9 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[STEM]] || 2.0 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[SVM_Light]] || 6.01 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[T-Coffee-rcluster]] || v 7.54 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Tracer]] || v 1.5 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[WISE2]] || 2.2.0 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[WU Blast-Altix]] || 2.2.6 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[3D_DOCK]] || 2.0 || Computational Chemistry || || pcluster || | ||
|- | |- | ||
| [[ | | [[AMBER-pcluster]] || 8 || 10 || || Computational Chemistry || | ||
|- | |- | ||
| [[ | | [[GAMESS-pcluster]] || Mar. 24 || 2007 R6 || || Apr.11 || | ||
|- | |- | ||
| [[ | | [[GAUSSIAN03]] || 03 || Computational Chemistry || || pcluster || | ||
|- | |- | ||
| [[ | | [[GAUSSIAN94]] || 94 (Note that version 03 is also available. See <a href=\/software/app/gaussian03/\>g03</a>) || Computational Chemistry || || pcluster || | ||
|- | |- | ||
| [[ | | [[Gromacs-rcluster]] || 3.3.3 || 4.0 and 4.5.3 || || Computational Chemistry || | ||
|- | |- | ||
| [[ | | [[MOTECC qmdcp -pcluster]] || 90 || Computational Chemistry || || pcluster || | ||
|- | |- | ||
| [[ | | [[NAMD-rcluster]] || 2.6 || 2.6b2 || || 2.7b1 || | ||
|- | |- | ||
| [[ | | [[NWCHEM]] || 4.7 || Computational Chemistry || || pcluster || | ||
|- | |- | ||
| [[ | | [[OpenMX-rcluster]] || 3.4.4v || Computational Chemistry || || rcluster || | ||
|- | |- | ||
| [[ | | [[VMD-rcluster]] || 1.8.4 || Computational Chemistry || || rcluster || | ||
|- | |- | ||
| [[ | | [[XPLOR-NIH -rcluster]] || 2.15 || Computational Chemistry || || rcluster || | ||
|- | |- | ||
| [[ | | [[X!!Tandem-rcluster]] || Based on X!Tandem 08-02-01-3 || Computational Chemistry || || rcluster || | ||
|- | |- | ||
| [[ | | [[Cddlib]] || 0.94 || Other || || rcluster || | ||
|- | |- | ||
| [[ | | [[Gfan]] || 0.3 || Other || || rcluster || | ||
|- | |- | ||
| [[ | | [[Macaulay2]] || 2-1.1 || Other || || rcluster || | ||
|- | |- | ||
| [[ | | [[Maple-pcluster]] || 10.06 || Other || || pcluster || | ||
|- | |- | ||
| [[ | | [[Mathematica]] || 5.2 || Other || || pcluster || | ||
|- | |- | ||
| [[ | | [[MatLab]] || R2012a (7.14.0.739) || Other || || zcluster || | ||
|- | |- | ||
| [[ | | [[NETCDF-pcluster]] || 3.5.1 || 3.6.2 || || Other || | ||
|- | |- | ||
| [[ | | [[polymake]] || 2.3 and alpha 2.9.5 || Other || || rcluster || | ||
|- | |- | ||
| [[ | | [[Sage]] || 3.1.1 || 3.4.1 || || Other || | ||
|- | |- | ||
| [[ | | [[LinBUGS-rcluster]] || uses OpenBUGS 2.2.0 || Statistics || || rcluster || | ||
|- | |- | ||
| [[ | | [[R-pcluster]] || 1.9.1 (pcluster) || 2.1.1 (pcluster) || || 2.4.0 (rcluster) || | ||
|- | |- | ||
| [[ | | [[R-rcluster]] || 2.4.0 || 2.5.1 || || 2.7.0 || | ||
|- | |- | ||
| [[ | | [[SAS]] || 9.1 || Statistics || || stats || | ||
|- | |- | ||
| [[ | | [[Bl2seq]] || || Bioinformatics || || || | ||
|- | |- | ||
| [[ | | [[Blastall]] || || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[BLASTCLUST]] || || Bioinformatics || || || | ||
|- | |- | ||
| [[ | | [[BLAST Databases]] || || || || || | ||
|- | |- | ||
| [[ | | [[Blastpgp]] || || Bioinformatics || || || | ||
|- | |- | ||
| [[ | | [[fastacmd]] || || || || || | ||
|- | |- | ||
| [[ | | [[Formatdb]] || || || || || | ||
|- | |- | ||
| [[ | | [[MEGABLAST]] || || || || || | ||
|- | |- | ||
| [[ | | [[Arabidopsis]] || || Database || || rcluster || | ||
|- | |- | ||
| [[ | | [[Arb]] || || || || || | ||
|- | |- | ||
| [[ | | [[Bacteria NCBI]] || || || || || | ||
|- | |- | ||
| [[ | | [[COG]] || || || || || | ||
|- | |- | ||
| [[ | | [[NCBI_database]] || || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[gss]] || || Bioinformatics || || <a href=\/software/subpages/data_estothers_ncbi/\>NCBI Blast Database</a> || | ||
|- | |- | ||
| [[ | | [[FISH]] || || || || || | ||
|- | |- | ||
| [[ | | [[Homo_sapien]] || || || || || | ||
|- | |- | ||
| [[ | | [[htgs]] || || || || || | ||
|- | |- | ||
| [[ | | [[KEGG]] || || || || || | ||
|- | |- | ||
| [[ | | [[Medicago]] || || || || || | ||
|- | |- | ||
| [[ | | [[Populus]] || || || || Rcluster || | ||
|- | |- | ||
| [[ | | [[Refseq]] || || || || || | ||
|- | |- | ||
| [[ | | [[Rice TIGR]] || || || || || | ||
|- | |- | ||
| [[ | | [[Roseobacter]] || || || || || | ||
|- | |- | ||
| [[ | | [[Silva]] || || || || || | ||
|- | |- | ||
| [[ | | [[Sus_scrofa]] || || || || || | ||
|- | |- | ||
| [[ | | [[Uniprot]] || || || || || | ||
|- | |- | ||
| [[ | | [[Uniref]] || || || || || | ||
|- | |- | ||
| [[ | | [[wublast]] || || Bioinformatics || || || | ||
|- | |- | ||
| [[ | | [[WU Blast]] || 2.2.6 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[AMBER-rcluster]] || 8 || 10 || || Computational Chemistry || | ||
|- | |- | ||
| [[ | | [[CodonW]] || Last Update : 2009-Oct-14. || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[ITK]] || 3.16.0 || Others || || rcluster || | ||
|- | |- | ||
| [[ | | [[VTK]] || 5.4.2 || Others || || rcluster || | ||
|- | |- | ||
| [[ | | [[FSL]] || 4.1.4 || Others || || rcluster || | ||
|- | |- | ||
| [[ | | [[Qlogic Infiniband]] || || || || || | ||
|- | |- | ||
| [[ | | [[MFOLD]] || 3.4 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[NAMD-pcluster]] || 2.6b2 || 2.7b1 || || Computational Chemistry || | ||
|- | |- | ||
| [[ | | [[GACRC Launches New Login Interface On November 2nd]] || || || || || | ||
|- | |- | ||
| [[ | | [[AlignACE]] || Last Update : 2004 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[NovoAlign]] || 2.07 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[MAQ]] || 0.7.1 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[RepeatModeler]] || 1.0.5 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Tandem Repeats Finder]] || 404 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[go-perl]] || 0.10 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[STAMP]] || 1.10 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[MIRA]] || 3.9.9 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[consensus-v6c]] || Version 6c. || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[pebl]] || 1.01 || installed for Python 2.6.2\ || || || | ||
|- | |- | ||
| [[ | | [[ESTScan]] || 2-2.1 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Burrows-Wheeler Aligner (BWA)]] || 0.6.2\ || || || || | ||
|- | |- | ||
| [[ | | [[maize]] || || Database || || rcluster || | ||
|- | |- | ||
| [[ | | [[RCAC Awards 1.3M+ CPU Hours]] || || || || || | ||
|- | |- | ||
| [[ | | [[tophat]] || 2.0.5 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[boxshade]] || v3.31 C || Bioinformatics || || Rcluster || | ||
|- | |- | ||
| [[ | | [[pfam]] || 26.0 || database || || zcluster || | ||
|- | |- | ||
| [[ | | [[128GB Dell Replaces 32GB Altix]] || || || || || | ||
|- | |- | ||
| [[ | | [[ncbi blast parsers]] || || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[Newbler]] || 2.6 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[mpi4py -rcluster]] || 1.2.1 || Utilities || || rcluster || | ||
|- | |- | ||
| [[ | | [[MOTHUR-rcluster]] || 1.8.0 || 1.9.0 || || 1.12.0 || | ||
|- | |- | ||
| [[ | | [[SUPERSPLAT]] || 1.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[SHRIMP]] || 2.1.1d || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[velvet]] || 1.2.01 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[bowtie]] || 0.12.8 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[MSPcrunch]] || 2.5 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Qiime-rcluster]] || 1.3.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Mono]] || 2.4.3 || Utilities || || rcluster || | ||
|- | |- | ||
| [[ | | [[Maple-rcluster]] || 14 || Other || || rcluster || | ||
|- | |- | ||
| [[ | | [[Running jobs with Sun Grid Engine]] || || || || || | ||
|- | |- | ||
| [[ | | [[SciDAC - Tutorials for Students]] || Engineers and Researchers in High-Performance Computing || || || || | ||
|- | |- | ||
| [[ | | [[ABINIT-rcluster]] || 6.0.4 || Computational Chemistry || || rcluster || | ||
|- | |- | ||
| [[ | | [[miRanda]] || 3.3a || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[pplacer]] || 1.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[PSLDoc]] || v2010-01 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Pyrobayes]] || Mosaik || GigaBayes || || || | ||
|- | |- | ||
| [[ | | [[QTL Cartographer]] || 1.17j || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[ViennaRNA]] || 1.8.5 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[RNAz]] || 2.1 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[LocARNA]] || 1.5.2 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[ngs_backbone]] || 1.0.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[SeqClean]] || 1.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[MCL-rcluster]] || 10-148 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Oases]] || 0.2.02 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[AUGUSTUS]] || 2.5.5 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[GlimmerHMM]] || 3.0.1 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[SNAP]] || 2010-7-28 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[exonerate]] || 2.2.0 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[GeneMark]] || genemark-ES 2.3e gGeneMark version 2.5m || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[UNAFold]] || 3.8 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[maker]] || 2.10 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[CELLO]] || 2.6 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[twinScan/n-Scan]] || 4.1.2 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[IDEG]] || 6.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[KiNG]] || 2.17 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[fasta format cleaner]] || 1.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[mpiblast]] || 1.6.0 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[prank]] || 100802 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[cufflinks]] || 2.0.2 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[phred/phrap/conced]] || || || || || | ||
|- | |- | ||
| [[ | | [[454 Software]] || || || || || | ||
|- | |- | ||
| [[ | | [[Roche]] || 2.6 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[SHE-RA]] || 012012 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[tRNAscan-SE]] || 1.23 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[NCBI Blast +]] || 2.2.26 is the last updated || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[LASTZ]] || 1.03.02 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[Multiz]] || 012109 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[plink]] || 1.07 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[iParameterEstimation (iPE)]] || 0.3.1 || Bioinformatics || || Rcluster || | ||
|- | |- | ||
| [[ | | [[carma-rcluster]] || 1.1 || Computational Chemistry || || rcluster || | ||
|- | |- | ||
| [[ | | [[samtools]] || 0.1.18 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[Archival Disk Storage Service]] || || || || || | ||
|- | |- | ||
| [[ | | [[OpenBUGS-rcluster]] || 3.1.2 || Statistics || || rcluster || | ||
|- | |- | ||
| [[ | | [[git]] || 1.7.4.1 || 1.7.9 || || Others || | ||
|- | |- | ||
| [[ | | [[PIIM]] || 2.0.1 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[count-rcluster]] || 032011 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[kaas]] || 100218 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[BS Seeker]] || download at Dec 113 || 2012 || || Bioinformatics || | ||
|- | |- | ||
| [[ | | [[LDhat]] || 2.1 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[mafft]] || 6.864b || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[opal]] || 2.0.0 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[SATé]] || 2.2.4 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[MOTECC qmdcp]] || 90 || Computational Chemistry || || zcluster || | ||
|- | |- | ||
| [[ | | [[scipio]] || 1.4 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[spaln]] || 1.4.5 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[FrameDP]] || 1.0.3 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Codon Usage]] || 1.00 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[mVISTA]] || 1.4.26 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[AVID]] || 2.1 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[TreeBeST]] || 1.9.2 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[PrIMETV]] || 1.5.6 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Ray]] || 1.4.0 || 1.6.1-0 || || Bioinformatics || | ||
|- | |- | ||
| [[ | | [[LAGAN]] || 2.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[SRA]] || 2.1.7 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Trinity]] || Versions r2012-10-05 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[k-link]] || 03 27 || 2009 || || Bioinformatics || | ||
|- | |- | ||
| [[ | | [[RBR]] || 0.8.6 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[BFast]] || 0.6.5a || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[FastX]] || Version 0.0.13 || 0.0.13.2 || || Bioinformatics || | ||
|- | |- | ||
| [[ | | [[MyScanACE]] || 04232012 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[wcdest]] || 0.6.3 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[Quantum Espresso-rcluster]] || 4.3.2 || Computational Chemistry || || rcluster || | ||
|- | |- | ||
| [[ | | [[mosaik]] || Mosaik 1.1.0021 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[primegsr]] || 1.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[FAR (Flexible Adapter Remover)]] || 2.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[topHat-fusion-rcluster]] || 0.1.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[gatk]] || 2.2-2-gf44cc4e || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[gatk-rcluster]] || || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[splign]] || 1.39.8 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[socs]] || 2.1.1 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[gfftosam (BaseQV)]] || 1.0.1 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[MaTogff]] || 0.2.06 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[breakdancer]] || 1.1_2011_02_21 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[CREST]] || 1.0 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[SOAPdenovo]] || 1.05 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[SEQuel]] || 1.0.2 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[TreeView X]] || 0.5.1 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[soap2]] || 2.21 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[cd-hit]] || 4.5.6 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[I-TASSER]] || 1.1 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[I-TASSER]] || 1.1 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[inteRNA]] || 3.3 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[RactIP]] || 0.0.2 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[ABySS-rcluster]] || 1.3.1 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[amos]] || 3.1.0 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[lsa]] || 11182011 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[SNVMix2]] || 0.11.8-r4 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[AmpliconNoise]] || 1.25 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[mrfast]] || 2.5.0.4 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[shorha]] || 0.5.1 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[tassel]] || 4.0 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[nupack]] || 3.0 || Bioinformatics || || rcluster || | ||
|- | |- | ||
| [[ | | [[TIGER]] || 1.02 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[BMGE]] || 1.1 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[nhPhyML]] || downloaded at 01/2012 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[pagan]] || 0.39 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[NH PhyloBayes]] || 0.2.3 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[LDDist]] || 1.3.2 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[strauto]] || 0.3.1 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[PhyloBayes]] || 3.3b || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[SOAPdenovo-trans]] || 1.01 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[gpu-blast]] || 1.1 with ncbi-blast-2.2.25+ || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[R]] || 2.14.0 || 2.15.0 || || Statistics || | ||
|- | |- | ||
| [[ | | [[Gromacs]] || 4.5.5 || Computational Chemistry || || zcluster || | ||
|- | |- | ||
| [[ | | [[picard]] || 1.62 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[ALLPATHS-LG]] || 44254 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[Quantum Espresso]] || 4.3.2 || 5.0.2 || || Computational Chemistry || | ||
|- | |- | ||
| [[ | | [[ABINIT]] || 6.12.1 || Computational Chemistry || || zcluster || | ||
|- | |- | ||
| [[ | | [[MOTHUR]] || 1.28.0 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[snow]] || 0.3-8 || Statistics || || zcluster || | ||
|- | |- | ||
| [[ | | [[Rmpi]] || 0.5-9 || Statistics || || zcluster || | ||
|- | |- | ||
| [[ | | [[iscan]] || 1.0.0 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[p4]] || r231 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[tgicl]] || 2.1 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[NETCDF]] || 4.1.3 || Other || || zcluster || | ||
|- | |- | ||
| [[ | | [[GenomeTools]] || 1.3.9 || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[snpEff]] || 2_0_5d || Bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[drmma]] || 0.5 || Others || || zcluster || | ||
|- | |- | ||
| [[ | | [[aaarf]] || 1.0.0 || bioinformatics || || zcluster || | ||
|- | |- | ||
| [[ | | [[netlogo]] || 5.0 || Other || || zcluster || | ||
|- | |- | ||
| [[ctrax]] || 0.3.2 || Other || || zcluster || | |||
|- | |||
| [[pysam]] || 0.6 || Bioinformatics || || zcluster || | |||
|- | |||
| [[OpenCV]] || 2.3.1 || Other || || zcluster || | |||
|- | |||
| [[mpi4py]] || 1.3 || Utilities || || zcluster || | |||
|- | |||
| [[grace]] || 5.1.22 || Others || || zcluster || | |||
|- | |||
| [[gnuplot]] || 4.0 || 4.6.0 || || Other || | |||
|- | |||
| [[SWIG]] || 2.0.5 || Utilities || || zcluster || | |||
|- | |||
| [[megan]] || 4.67.2 || Bioinformatics || || zcluster || | |||
|- | |||
| [[yasra]] || 2.3 || Bioinformatics || || zcluster || | |||
|- | |||
| [[gmap]] || 2007-09-28 || Bioinformatics || || zcluster || | |||
|- | |||
| [[cdbfasta]] || 04282012 || Bioinformatics || || zcluster || | |||
|- | |||
| [[slclust]] || 04282012 || Bioinformatics || || zcluster || | |||
|- | |||
| [[htseq]] || 0.5.3p3 || Bioinformatics || || zcluster || | |||
|- | |||
| [[STEM-rcluster]] || || Bioinformatics || || rcluster || | |||
|- | |||
| [[AMBER]] || 11 || 12<strong><br /></strong> || || Computational Chemistry || | |||
|- | |||
| [[OSPREY]] || 2.0 || Bioinformatics || || zcluster || | |||
|- | |||
| [[vmatch]] || 2.1.6 || Bioinformatics || || zcluster || | |||
|- | |||
| [[rnnotator]] || 2.4.12 || Bioinformatics || || zcluster || | |||
|- | |||
| [[tagdust]] || 1.12 || Bioinformatics || || zcluster || | |||
|- | |||
| [[snowhite]] || 1.1.4 || Bioinformatics || || zcluster || | |||
|- | |||
| [[gmap-gsnap]] || 2012-07-20 || Bioinformatics || || zcluster || | |||
|- | |||
| [[bowtie2]] || 2.0.0-beta7 || Bioinformatics || || zcluster || | |||
|- | |||
| [[spimap]] || 1.1 || Bioinformatics || || zcluster || | |||
|- | |||
| [[DLCoal]] || 1.0 || Bioinformatics || || zcluster || | |||
|- | |||
| [[structure]] || 2.3.3 || Bioinformatics || || zcluster || | |||
|- | |||
| [[vcftools]] || 0.1.10 || Bioinformatics || || zcluster || | |||
|- | |||
| [[Coding Potential Calculator]] || 0.9-r2 || Bioinformatics || || zcluster || | |||
|- | |||
| [[Qiime]] || 1.6.0 || Bioinformatics || || zcluster || | |||
|- | |||
| [[HDF5]] || 1.6.4 || 1.8.9 || || Other || | |||
|- | |||
| [[ABySS]] || 1.3.4 || Bioinformatics || || zcluster || | |||
|- | |||
| [[RUM]] || 1.11 || Bioinformatics || || zcluster || | |||
|- | |||
| [[Count]] || 2010-04-02 || Bioinformatics || || zcluster || | |||
|- | |||
| [[cutadapt]] || 1.1 || Bioinformatics || || zcluster || | |||
|- | |||
| [[MCL]] || 12-135 || Bioinformatics || || zcluster || | |||
|- | |||
| [[T-Coffee]] || 9.03.r1318 || Bioinformatics || || zcluster || | |||
|- | |||
| [[Primer3]] || 2.3.4 || Bioinformatics || || zcluster || | |||
|- | |||
| [[tabix]] || 0.2.5 || Bioinformatics || || zcluster || | |||
|- | |||
| [[numexp]] || 1.4.2 || Other || || zcluster || | |||
|- | |||
| [[PyTables]] || 2.3.1 || Other || || zcluster || | |||
|- | |||
| [[BEDTools]] || 2.16.2 || Bioinformatics || || zcluster || | |||
|- | |||
| [[circos]] || 0.62 || Bioinformatics || || zcluster || | |||
|- | |||
| [[SVDetect]] || r0.7m || Bioinformatics || || zcluster || | |||
|- | |||
| [[cortex_con]] || 0.04c || Bioinformatics || || zcluster || | |||
|- | |||
| [[stacks]] || 0.9993 || 0.9996 || || Bioinformatics || | |||
|- | |||
| [[cortex_var]] || 1.0.5.3 || Bioinformatics || || zcluster || | |||
|- | |||
| [[edena]] || 3Dev120626 || Bioinformatics || || zcluster || | |||
|- | |||
| [[emmix]] || 1.3 || Bioinformatics || || zcluster || | |||
|- | |||
| [[SiZer]] || 07022012 || Bioinformatics || || zcluster || | |||
|- | |||
| [[macs]] || 1.4.2 || Bioinformatics || || zcluster || | |||
|- | |||
| [[evm (EVidenceModeler)]] || r2012-06-25 || Bioinformatics || || zcluster || | |||
|- | |||
| [[FLASH]] || 1.0.3 || Bioinformatics || || zcluster || | |||
|- | |||
| [[pandaseq]] || 2.0 || Bioinformatics || || zcluster || | |||
|- | |||
| [[fasttree]] || 2.1.4 || Bioinformatics || || zcluster || | |||
|- | |||
| [[Papara_nt]] || 2.1.2 || Bioinformatics || || zcluster || | |||
|- | |||
| [[Gblocks]] || 0.91b || Bioinformatics || || zcluster || | |||
|- | |||
| [[NAMD]] || 2.9 || Computational Chemistry || || zcluster || | |||
|- | |||
| [[FAR]] || 2.15 || Bioinformatics || || zcluster || | |||
|- | |||
| [[FastQC]] || 0.10.1 || Bioinformatics || || zcluster || | |||
|- | |||
| [[brownie]] || 2.1.2 || Bioinformatics || || zcluster || | |||
|- | |||
| [[Bismark Bisulfite Mapper]] || 0.7.6 || Bioinformatics || || zcluster || | |||
|- | |||
| [[Glimmer]] || 3.0.2 || Bioinformatics || || zcluster || | |||
|- | |||
| [[bam2fastq]] || 1.1.0 || Bioinformatics || || zcluster || | |||
|- | |||
| [[quake]] || 0.3.4 || Bioinformatics || || zcluster || | |||
|- | |||
| [[Jellyfish]] || 1.1.5 || Bioinformatics || || zcluster || | |||
|- | |||
| [[BiSS]] || 0.0.1 || Bioinformatics || || zcluster || | |||
|- | |||
| [[SomaticCall]] || 42811 || Bioinformatics || || zcluster || | |||
|- | |||
| [[IGV]] || 2.1.23 || Bioinformatics || || zcluster || | |||
|- | |||
| [[igb]] || 6.7.3 || Bioinformatics || || zcluster || | |||
|- | |||
| [[PeakSplitter]] || 1.0 || Bioinformatics || || zcluster || | |||
|- | |||
| [[CEAS]] || 1.0.2 || Bioinformatics || || zcluster || | |||
|- | |||
| [[OpenBUGS]] || 3.2.2 || Statistics || || zcluster || | |||
|- | |||
| [[VelvetOptimiser]] || 2.2.4 || Bioinformatics || || zcluster || | |||
|- | |||
| [[LLVM-Clang]] || 3.1 || Utilities || || zcluster || | |||
|- | |||
| [[sickle]] || 1.200 || Bioinformatics || || zcluster || | |||
|- | |||
| [[GenomeMapper]] || 0.4.3 (Version for SHORE/WMD3) || Bioinformatics || || zcluster || | |||
|- | |||
| [[SHORE]] || 0.8 || Bioinformatics || || zcluster || | |||
|- | |||
| [[PASHA]] || 1.0.6 || Bioinformatics || || zcluster || | |||
|- | |||
| [[RAxML-Light]] || 1.0.5 || Bioinformatics || || zcluster || | |||
|- | |||
| [[ExaML]] || 315576 || Bioinformatics || || zcluster || | |||
|- | |||
| [[riboPicker]] || 0.4.3 || Bioinformatics || || zcluster || | |||
|- | |||
| [[RMBlast]] || 2.2.27 || Bioinformatics || || zcluster || | |||
|- | |||
| [[RSEM]] || 1.1.21 || 1.2.0 || || Bioinformatics || | |||
|- | |||
| [[MEAD]] || 2.2.9 || Computational Chemistry || || zcluster || | |||
|- | |||
| [[Open Babel]] || 2.3.1 || Computational Chemistry || || zcluster || | |||
|- | |||
| [[SpliceGrapher]] || 0.2.0 || Bioinformatics || || zcluster || | |||
|- | |||
| [[wigToBigWig]] || v 4 || Bioinformatics || || zcluster || | |||
|- | |||
| [[MSA]] || 3.8.1b || Bioinformatics || || zcluster || | |||
|- | |||
| [[libsequence]] || 1.7.4 || Bioinformatics || || zcluster || | |||
|- | |||
| [[GAMESS]] || May2012R1 || with XMVB 2.0. || || Computational Chemistry || | |||
|- | |||
| [[RECON]] || 1.05 || Bioinformatics || || zcluster || | |||
|- | |||
| [[CEGMA]] || 2.4.010312 || Bioinformatics || || zcluster || | |||
|- | |||
| [[SSPACE]] || 2.0 || Bioinformatics || || zcluster || | |||
|- | |||
| [[RSAT]] || 1.0 || Bioinformatics || || zcluster || | |||
|- | |||
| [[RTD]] || git at 11/28/2012 || Bioinformatics || || zcluster || | |||
|- | |||
| [[ddRADseq]] || || Bioinformatics || || zcluster || | |||
|- | |||
| [[usearch]] || v6.0.30 || Bioinformatics || || zcluster || | |||
|- | |||
| [[GapFiller]] || 1.11 || Bioinformatics || || zcluster || | |||
|- | |||
| [[InStruct]] || 3.2.09 || Bioinformatics || || zcluster || | |||
|- | |||
| [[NovelSeq]] || 1.0.2 || Bioinformatics || || zcluster || | |||
|- | |||
| [[SOAPdenovo2]] || r223 || Bioinformatics || || zcluster || | |||
|- | |||
| [[Minia]] || 1.4683 || Bioinformatics || || zcluster || | |||
|- | |||
| [[ea-utils]] || 1.1.2-537 || Bioinformatics || || zcluster || | |||
|- | |||
|} | |} | ||
[[Category:Zcluster]] | [[Category:Zcluster]] | ||
Revision as of 14:57, 14 January 2013
Installed Software List
Last updated 2013-01-14.
Note: Click on the icons to the right of the column headings to sort the table.
| Name | Version | Website | Category | Cluster | Notes |
|---|---|---|---|---|---|
| ARB | 5.3 | Bioinformatics | zcluster | ||
| Artemis | Release 8 | Bioinformatics | rcluster | ||
| Bali-phy-Altix | 1.9.8 | Bioinformatics | Altix | ||
| Bali-phy-rcluster | 1.9.8 | Bioinformatics | rcluster | ||
| BEAST | 1.7.2 | Bioinformatics | zcluster | ||
| BEST Bayesian | 2.3.1 | Bioinformatics | Bioinformatics | ||
| BEST Binding | 1.0 | Bioinformatics | rcluster | ||
| Bioconductor | 1.9 (compiled with R-2.4.0) | Bioinformatics | rcluster | ||
| BioPerl-altix | 1.4 | Bioinformatics | Altix | ||
| BioPerl | 1.61 | Bioinformatics | zcluster | ||
| BioPython | 1.58 | Bioinformatics | zcluster | ||
| NCBI Blast-Altix | 2.2.20 is the last updated. older versions are also available. | Bioinformatics | Altix | ||
| NCBI Blast | 2.2.26 is the last updated. older versions are also available. | Bioinformatics | zcluster | ||
| RCCBatchBlast | 4.0 | Bioinformatics | zcluster | ||
| Blat | 3.5 | Bioinformatics | zcluster | ||
| CAP3-Altix | Date - 04/15/2005 | Bioinformatics | Altix | ||
| CAP3-rcluster IOB | Date : 04/15/2005 | Bioinformatics | rcluster | ||
| ClustalW-Altix | 1.8.3 | Bioinformatics | Altix | ||
| ClustalW | 2.1 | Bioinformatics | zcluster | ||
| CONSEL | v0.20 | Bioinformatics | zcluster | ||
| EMBOSS-Altix | 6.0.1 (updated at 02/09/2008) | Bioinformatics | Altix | ||
| EMBOSS-rcluster | 6.2.0 (updated at 04/17/2010) | Bioinformatics | rcluster | ||
| FASTA | 36 | Bioinformatics | zcluster | ||
| FIRE | 1.1 | Bioinformatics | zcluster | ||
| FitModel | 0.5.3 | Bioinformatics | zcluster | ||
| Gblocks-rcluster | 0.91b | Bioinformatics | rcluster | ||
| GCG (Wisconsin Package) | 11.0 | Bioinformatics | rcluster | ||
| Genezilla | 1.0 | Bioinformatics | rcluster | ||
| Genome-Altix | Phred version: 0.020425.c | phrap version 1.080812 | phd2fasta version: 0.990622.f | ||
| Genome | Phred version: 0.071220.c | phrap version 0.990329 | phd2fasta version: 0.990622.f | ||
| Hmmer-Altix | v3.0.a1 | v2.3.2 | v1.8 | ||
| Hmmer | 3.0 | Bioinformatics | zcluster | ||
| IMa | May 06 | 2009 | Bioinformatics | ||
| indel-Seq-Gen | 2.02 | Bioinformatics | rcluster | ||
| iprscan (InterProScan) | 5.0 CR2 | Bioinformatics | zcluster | ||
| LUCY-Altix | 1.19 | Bioinformatics | Altix | ||
| LUCY-rcluster | 1.19 | Bioinformatics | rcluster | ||
| MDscan | 2004 | Bioinformatics | rcluster | ||
| MEME | 4.8.1 | Bioinformatics | zcluster | ||
| Migrate | 3.0.3 | 3.2.16 | Bioinformatics | ||
| MrBayes-altix | 3.1.2 | Bioinformatics | Altix | ||
| MrBayes | 3.1.2 | 3.2.1 | Bioinformatics | ||
| MSBlast | 2003 | Bioinformatics | rcluster | ||
| MUMmer | 3.22 | Bioinformatics | rcluster | ||
| MUSCLE-Altix | 3.6 | Bioinformatics | Altix | ||
| MUSCLE | 3.8.31 | Bioinformatics | zcluster | ||
| PAML | Latest version 4.4 | Bioinformatics | zcluster | ||
| Pfam_scan | 04282012 | Bioinformatics | zcluster | ||
| pfamDNASearch | 1.5 | Bioinformatics | rcluster | ||
| pftools | 2.3.5 | Bioinformatics | zcluster | ||
| PHYLIP | 3.6 | Bioinformatics | rcluster | ||
| PHYML | 20110919 | 20120412 | Bioinformatics | ||
| PolyBayes-Altix | 3.0 | Bioinformatics | Altix | ||
| PolyBayes-rcluster | 3.0 | Bioinformatics | rcluster | ||
| PSORTb | 3.0.2 | Bioinformatics | rcluster | ||
| RAxML | 04/26/2012 | Bioinformatics | zcluster | ||
| RECON | 1.05 | Bioinformatics | rcluster | ||
| RepeatFinder | n/a | Bioinformatics | rcluster | ||
| Repeatmasker | 3.3 | Bioinformatics | zcluster | ||
| RepeatScout | 1.05 | Bioinformatics | zcluster | ||
| Reputer | 2.74 | Bioinformatics | rcluster | ||
| SSAHA2 | 1.0.9 | Bioinformatics | rcluster | ||
| STEM | 2.0 | Bioinformatics | zcluster | ||
| SVM_Light | 6.01 | Bioinformatics | rcluster | ||
| T-Coffee-rcluster | v 7.54 | Bioinformatics | rcluster | ||
| Tracer | v 1.5 | Bioinformatics | zcluster | ||
| WISE2 | 2.2.0 | Bioinformatics | zcluster | ||
| WU Blast-Altix | 2.2.6 | Bioinformatics | rcluster | ||
| 3D_DOCK | 2.0 | Computational Chemistry | pcluster | ||
| AMBER-pcluster | 8 | 10 | Computational Chemistry | ||
| GAMESS-pcluster | Mar. 24 | 2007 R6 | Apr.11 | ||
| GAUSSIAN03 | 03 | Computational Chemistry | pcluster | ||
| GAUSSIAN94 | 94 (Note that version 03 is also available. See <a href=\/software/app/gaussian03/\>g03</a>) | Computational Chemistry | pcluster | ||
| Gromacs-rcluster | 3.3.3 | 4.0 and 4.5.3 | Computational Chemistry | ||
| MOTECC qmdcp -pcluster | 90 | Computational Chemistry | pcluster | ||
| NAMD-rcluster | 2.6 | 2.6b2 | 2.7b1 | ||
| NWCHEM | 4.7 | Computational Chemistry | pcluster | ||
| OpenMX-rcluster | 3.4.4v | Computational Chemistry | rcluster | ||
| VMD-rcluster | 1.8.4 | Computational Chemistry | rcluster | ||
| XPLOR-NIH -rcluster | 2.15 | Computational Chemistry | rcluster | ||
| X!!Tandem-rcluster | Based on X!Tandem 08-02-01-3 | Computational Chemistry | rcluster | ||
| Cddlib | 0.94 | Other | rcluster | ||
| Gfan | 0.3 | Other | rcluster | ||
| Macaulay2 | 2-1.1 | Other | rcluster | ||
| Maple-pcluster | 10.06 | Other | pcluster | ||
| Mathematica | 5.2 | Other | pcluster | ||
| MatLab | R2012a (7.14.0.739) | Other | zcluster | ||
| NETCDF-pcluster | 3.5.1 | 3.6.2 | Other | ||
| polymake | 2.3 and alpha 2.9.5 | Other | rcluster | ||
| Sage | 3.1.1 | 3.4.1 | Other | ||
| LinBUGS-rcluster | uses OpenBUGS 2.2.0 | Statistics | rcluster | ||
| R-pcluster | 1.9.1 (pcluster) | 2.1.1 (pcluster) | 2.4.0 (rcluster) | ||
| R-rcluster | 2.4.0 | 2.5.1 | 2.7.0 | ||
| SAS | 9.1 | Statistics | stats | ||
| Bl2seq | Bioinformatics | ||||
| Blastall | Bioinformatics | zcluster | |||
| BLASTCLUST | Bioinformatics | ||||
| BLAST Databases | |||||
| Blastpgp | Bioinformatics | ||||
| fastacmd | |||||
| Formatdb | |||||
| MEGABLAST | |||||
| Arabidopsis | Database | rcluster | |||
| Arb | |||||
| Bacteria NCBI | |||||
| COG | |||||
| NCBI_database | Bioinformatics | zcluster | |||
| gss | Bioinformatics | <a href=\/software/subpages/data_estothers_ncbi/\>NCBI Blast Database</a> | |||
| FISH | |||||
| Homo_sapien | |||||
| htgs | |||||
| KEGG | |||||
| Medicago | |||||
| Populus | Rcluster | ||||
| Refseq | |||||
| Rice TIGR | |||||
| Roseobacter | |||||
| Silva | |||||
| Sus_scrofa | |||||
| Uniprot | |||||
| Uniref | |||||
| wublast | Bioinformatics | ||||
| WU Blast | 2.2.6 | Bioinformatics | zcluster | ||
| AMBER-rcluster | 8 | 10 | Computational Chemistry | ||
| CodonW | Last Update : 2009-Oct-14. | Bioinformatics | rcluster | ||
| ITK | 3.16.0 | Others | rcluster | ||
| VTK | 5.4.2 | Others | rcluster | ||
| FSL | 4.1.4 | Others | rcluster | ||
| Qlogic Infiniband | |||||
| MFOLD | 3.4 | Bioinformatics | rcluster | ||
| NAMD-pcluster | 2.6b2 | 2.7b1 | Computational Chemistry | ||
| GACRC Launches New Login Interface On November 2nd | |||||
| AlignACE | Last Update : 2004 | Bioinformatics | rcluster | ||
| NovoAlign | 2.07 | Bioinformatics | zcluster | ||
| MAQ | 0.7.1 | Bioinformatics | zcluster | ||
| RepeatModeler | 1.0.5 | Bioinformatics | rcluster | ||
| Tandem Repeats Finder | 404 | Bioinformatics | rcluster | ||
| go-perl | 0.10 | Bioinformatics | rcluster | ||
| STAMP | 1.10 | Bioinformatics | rcluster | ||
| MIRA | 3.9.9 | Bioinformatics | zcluster | ||
| consensus-v6c | Version 6c. | Bioinformatics | rcluster | ||
| pebl | 1.01 | installed for Python 2.6.2\ | |||
| ESTScan | 2-2.1 | Bioinformatics | rcluster | ||
| Burrows-Wheeler Aligner (BWA) | 0.6.2\ | ||||
| maize | Database | rcluster | |||
| RCAC Awards 1.3M+ CPU Hours | |||||
| tophat | 2.0.5 | Bioinformatics | zcluster | ||
| boxshade | v3.31 C | Bioinformatics | Rcluster | ||
| pfam | 26.0 | database | zcluster | ||
| 128GB Dell Replaces 32GB Altix | |||||
| ncbi blast parsers | Bioinformatics | zcluster | |||
| Newbler | 2.6 | Bioinformatics | zcluster | ||
| mpi4py -rcluster | 1.2.1 | Utilities | rcluster | ||
| MOTHUR-rcluster | 1.8.0 | 1.9.0 | 1.12.0 | ||
| SUPERSPLAT | 1.0 | Bioinformatics | rcluster | ||
| SHRIMP | 2.1.1d | Bioinformatics | rcluster | ||
| velvet | 1.2.01 | Bioinformatics | zcluster | ||
| bowtie | 0.12.8 | Bioinformatics | zcluster | ||
| MSPcrunch | 2.5 | Bioinformatics | rcluster | ||
| Qiime-rcluster | 1.3.0 | Bioinformatics | rcluster | ||
| Mono | 2.4.3 | Utilities | rcluster | ||
| Maple-rcluster | 14 | Other | rcluster | ||
| Running jobs with Sun Grid Engine | |||||
| SciDAC - Tutorials for Students | Engineers and Researchers in High-Performance Computing | ||||
| ABINIT-rcluster | 6.0.4 | Computational Chemistry | rcluster | ||
| miRanda | 3.3a | Bioinformatics | rcluster | ||
| pplacer | 1.0 | Bioinformatics | rcluster | ||
| PSLDoc | v2010-01 | Bioinformatics | rcluster | ||
| Pyrobayes | Mosaik | GigaBayes | |||
| QTL Cartographer | 1.17j | Bioinformatics | zcluster | ||
| ViennaRNA | 1.8.5 | Bioinformatics | zcluster | ||
| RNAz | 2.1 | Bioinformatics | zcluster | ||
| LocARNA | 1.5.2 | Bioinformatics | rcluster | ||
| ngs_backbone | 1.0.0 | Bioinformatics | rcluster | ||
| SeqClean | 1.0 | Bioinformatics | rcluster | ||
| MCL-rcluster | 10-148 | Bioinformatics | rcluster | ||
| Oases | 0.2.02 | Bioinformatics | rcluster | ||
| AUGUSTUS | 2.5.5 | Bioinformatics | zcluster | ||
| GlimmerHMM | 3.0.1 | Bioinformatics | zcluster | ||
| SNAP | 2010-7-28 | Bioinformatics | zcluster | ||
| exonerate | 2.2.0 | Bioinformatics | zcluster | ||
| GeneMark | genemark-ES 2.3e gGeneMark version 2.5m | Bioinformatics | zcluster | ||
| UNAFold | 3.8 | Bioinformatics | zcluster | ||
| maker | 2.10 | Bioinformatics | zcluster | ||
| CELLO | 2.6 | Bioinformatics | rcluster | ||
| twinScan/n-Scan | 4.1.2 | Bioinformatics | rcluster | ||
| IDEG | 6.0 | Bioinformatics | rcluster | ||
| KiNG | 2.17 | Bioinformatics | rcluster | ||
| fasta format cleaner | 1.0 | Bioinformatics | rcluster | ||
| mpiblast | 1.6.0 | Bioinformatics | zcluster | ||
| prank | 100802 | Bioinformatics | zcluster | ||
| cufflinks | 2.0.2 | Bioinformatics | zcluster | ||
| phred/phrap/conced | |||||
| 454 Software | |||||
| Roche | 2.6 | Bioinformatics | zcluster | ||
| SHE-RA | 012012 | Bioinformatics | zcluster | ||
| tRNAscan-SE | 1.23 | Bioinformatics | rcluster | ||
| NCBI Blast + | 2.2.26 is the last updated | Bioinformatics | rcluster | ||
| LASTZ | 1.03.02 | Bioinformatics | zcluster | ||
| Multiz | 012109 | Bioinformatics | rcluster | ||
| plink | 1.07 | Bioinformatics | rcluster | ||
| iParameterEstimation (iPE) | 0.3.1 | Bioinformatics | Rcluster | ||
| carma-rcluster | 1.1 | Computational Chemistry | rcluster | ||
| samtools | 0.1.18 | Bioinformatics | zcluster | ||
| Archival Disk Storage Service | |||||
| OpenBUGS-rcluster | 3.1.2 | Statistics | rcluster | ||
| git | 1.7.4.1 | 1.7.9 | Others | ||
| PIIM | 2.0.1 | Bioinformatics | rcluster | ||
| count-rcluster | 032011 | Bioinformatics | rcluster | ||
| kaas | 100218 | Bioinformatics | rcluster | ||
| BS Seeker | download at Dec 113 | 2012 | Bioinformatics | ||
| LDhat | 2.1 | Bioinformatics | rcluster | ||
| mafft | 6.864b | Bioinformatics | zcluster | ||
| opal | 2.0.0 | Bioinformatics | zcluster | ||
| SATé | 2.2.4 | Bioinformatics | zcluster | ||
| MOTECC qmdcp | 90 | Computational Chemistry | zcluster | ||
| scipio | 1.4 | Bioinformatics | rcluster | ||
| spaln | 1.4.5 | Bioinformatics | rcluster | ||
| FrameDP | 1.0.3 | Bioinformatics | rcluster | ||
| Codon Usage | 1.00 | Bioinformatics | rcluster | ||
| mVISTA | 1.4.26 | Bioinformatics | rcluster | ||
| AVID | 2.1 | Bioinformatics | rcluster | ||
| TreeBeST | 1.9.2 | Bioinformatics | rcluster | ||
| PrIMETV | 1.5.6 | Bioinformatics | rcluster | ||
| Ray | 1.4.0 | 1.6.1-0 | Bioinformatics | ||
| LAGAN | 2.0 | Bioinformatics | rcluster | ||
| SRA | 2.1.7 | Bioinformatics | rcluster | ||
| Trinity | Versions r2012-10-05 | Bioinformatics | zcluster | ||
| k-link | 03 27 | 2009 | Bioinformatics | ||
| RBR | 0.8.6 | Bioinformatics | rcluster | ||
| BFast | 0.6.5a | Bioinformatics | rcluster | ||
| FastX | Version 0.0.13 | 0.0.13.2 | Bioinformatics | ||
| MyScanACE | 04232012 | Bioinformatics | zcluster | ||
| wcdest | 0.6.3 | Bioinformatics | rcluster | ||
| Quantum Espresso-rcluster | 4.3.2 | Computational Chemistry | rcluster | ||
| mosaik | Mosaik 1.1.0021 | Bioinformatics | rcluster | ||
| primegsr | 1.0 | Bioinformatics | rcluster | ||
| FAR (Flexible Adapter Remover) | 2.0 | Bioinformatics | rcluster | ||
| topHat-fusion-rcluster | 0.1.0 | Bioinformatics | rcluster | ||
| gatk | 2.2-2-gf44cc4e | Bioinformatics | zcluster | ||
| gatk-rcluster | Bioinformatics | rcluster | |||
| splign | 1.39.8 | Bioinformatics | rcluster | ||
| socs | 2.1.1 | Bioinformatics | rcluster | ||
| gfftosam (BaseQV) | 1.0.1 | Bioinformatics | rcluster | ||
| MaTogff | 0.2.06 | Bioinformatics | rcluster | ||
| breakdancer | 1.1_2011_02_21 | Bioinformatics | zcluster | ||
| CREST | 1.0 | Bioinformatics | zcluster | ||
| SOAPdenovo | 1.05 | Bioinformatics | zcluster | ||
| SEQuel | 1.0.2 | Bioinformatics | zcluster | ||
| TreeView X | 0.5.1 | Bioinformatics | rcluster | ||
| soap2 | 2.21 | Bioinformatics | rcluster | ||
| cd-hit | 4.5.6 | Bioinformatics | zcluster | ||
| I-TASSER | 1.1 | Bioinformatics | rcluster | ||
| I-TASSER | 1.1 | Bioinformatics | rcluster | ||
| inteRNA | 3.3 | Bioinformatics | rcluster | ||
| RactIP | 0.0.2 | Bioinformatics | rcluster | ||
| ABySS-rcluster | 1.3.1 | Bioinformatics | rcluster | ||
| amos | 3.1.0 | Bioinformatics | zcluster | ||
| lsa | 11182011 | Bioinformatics | zcluster | ||
| SNVMix2 | 0.11.8-r4 | Bioinformatics | rcluster | ||
| AmpliconNoise | 1.25 | Bioinformatics | rcluster | ||
| mrfast | 2.5.0.4 | Bioinformatics | zcluster | ||
| shorha | 0.5.1 | Bioinformatics | rcluster | ||
| tassel | 4.0 | Bioinformatics | zcluster | ||
| nupack | 3.0 | Bioinformatics | rcluster | ||
| TIGER | 1.02 | Bioinformatics | zcluster | ||
| BMGE | 1.1 | Bioinformatics | zcluster | ||
| nhPhyML | downloaded at 01/2012 | Bioinformatics | zcluster | ||
| pagan | 0.39 | Bioinformatics | zcluster | ||
| NH PhyloBayes | 0.2.3 | Bioinformatics | zcluster | ||
| LDDist | 1.3.2 | Bioinformatics | zcluster | ||
| strauto | 0.3.1 | Bioinformatics | zcluster | ||
| PhyloBayes | 3.3b | Bioinformatics | zcluster | ||
| SOAPdenovo-trans | 1.01 | Bioinformatics | zcluster | ||
| gpu-blast | 1.1 with ncbi-blast-2.2.25+ | Bioinformatics | zcluster | ||
| R | 2.14.0 | 2.15.0 | Statistics | ||
| Gromacs | 4.5.5 | Computational Chemistry | zcluster | ||
| picard | 1.62 | Bioinformatics | zcluster | ||
| ALLPATHS-LG | 44254 | Bioinformatics | zcluster | ||
| Quantum Espresso | 4.3.2 | 5.0.2 | Computational Chemistry | ||
| ABINIT | 6.12.1 | Computational Chemistry | zcluster | ||
| MOTHUR | 1.28.0 | Bioinformatics | zcluster | ||
| snow | 0.3-8 | Statistics | zcluster | ||
| Rmpi | 0.5-9 | Statistics | zcluster | ||
| iscan | 1.0.0 | Bioinformatics | zcluster | ||
| p4 | r231 | Bioinformatics | zcluster | ||
| tgicl | 2.1 | Bioinformatics | zcluster | ||
| NETCDF | 4.1.3 | Other | zcluster | ||
| GenomeTools | 1.3.9 | Bioinformatics | zcluster | ||
| snpEff | 2_0_5d | Bioinformatics | zcluster | ||
| drmma | 0.5 | Others | zcluster | ||
| aaarf | 1.0.0 | bioinformatics | zcluster | ||
| netlogo | 5.0 | Other | zcluster | ||
| ctrax | 0.3.2 | Other | zcluster | ||
| pysam | 0.6 | Bioinformatics | zcluster | ||
| OpenCV | 2.3.1 | Other | zcluster | ||
| mpi4py | 1.3 | Utilities | zcluster | ||
| grace | 5.1.22 | Others | zcluster | ||
| gnuplot | 4.0 | 4.6.0 | Other | ||
| SWIG | 2.0.5 | Utilities | zcluster | ||
| megan | 4.67.2 | Bioinformatics | zcluster | ||
| yasra | 2.3 | Bioinformatics | zcluster | ||
| gmap | 2007-09-28 | Bioinformatics | zcluster | ||
| cdbfasta | 04282012 | Bioinformatics | zcluster | ||
| slclust | 04282012 | Bioinformatics | zcluster | ||
| htseq | 0.5.3p3 | Bioinformatics | zcluster | ||
| STEM-rcluster | Bioinformatics | rcluster | |||
| AMBER | 11 | 12 |
Computational Chemistry | ||
| OSPREY | 2.0 | Bioinformatics | zcluster | ||
| vmatch | 2.1.6 | Bioinformatics | zcluster | ||
| rnnotator | 2.4.12 | Bioinformatics | zcluster | ||
| tagdust | 1.12 | Bioinformatics | zcluster | ||
| snowhite | 1.1.4 | Bioinformatics | zcluster | ||
| gmap-gsnap | 2012-07-20 | Bioinformatics | zcluster | ||
| bowtie2 | 2.0.0-beta7 | Bioinformatics | zcluster | ||
| spimap | 1.1 | Bioinformatics | zcluster | ||
| DLCoal | 1.0 | Bioinformatics | zcluster | ||
| structure | 2.3.3 | Bioinformatics | zcluster | ||
| vcftools | 0.1.10 | Bioinformatics | zcluster | ||
| Coding Potential Calculator | 0.9-r2 | Bioinformatics | zcluster | ||
| Qiime | 1.6.0 | Bioinformatics | zcluster | ||
| HDF5 | 1.6.4 | 1.8.9 | Other | ||
| ABySS | 1.3.4 | Bioinformatics | zcluster | ||
| RUM | 1.11 | Bioinformatics | zcluster | ||
| Count | 2010-04-02 | Bioinformatics | zcluster | ||
| cutadapt | 1.1 | Bioinformatics | zcluster | ||
| MCL | 12-135 | Bioinformatics | zcluster | ||
| T-Coffee | 9.03.r1318 | Bioinformatics | zcluster | ||
| Primer3 | 2.3.4 | Bioinformatics | zcluster | ||
| tabix | 0.2.5 | Bioinformatics | zcluster | ||
| numexp | 1.4.2 | Other | zcluster | ||
| PyTables | 2.3.1 | Other | zcluster | ||
| BEDTools | 2.16.2 | Bioinformatics | zcluster | ||
| circos | 0.62 | Bioinformatics | zcluster | ||
| SVDetect | r0.7m | Bioinformatics | zcluster | ||
| cortex_con | 0.04c | Bioinformatics | zcluster | ||
| stacks | 0.9993 | 0.9996 | Bioinformatics | ||
| cortex_var | 1.0.5.3 | Bioinformatics | zcluster | ||
| edena | 3Dev120626 | Bioinformatics | zcluster | ||
| emmix | 1.3 | Bioinformatics | zcluster | ||
| SiZer | 07022012 | Bioinformatics | zcluster | ||
| macs | 1.4.2 | Bioinformatics | zcluster | ||
| evm (EVidenceModeler) | r2012-06-25 | Bioinformatics | zcluster | ||
| FLASH | 1.0.3 | Bioinformatics | zcluster | ||
| pandaseq | 2.0 | Bioinformatics | zcluster | ||
| fasttree | 2.1.4 | Bioinformatics | zcluster | ||
| Papara_nt | 2.1.2 | Bioinformatics | zcluster | ||
| Gblocks | 0.91b | Bioinformatics | zcluster | ||
| NAMD | 2.9 | Computational Chemistry | zcluster | ||
| FAR | 2.15 | Bioinformatics | zcluster | ||
| FastQC | 0.10.1 | Bioinformatics | zcluster | ||
| brownie | 2.1.2 | Bioinformatics | zcluster | ||
| Bismark Bisulfite Mapper | 0.7.6 | Bioinformatics | zcluster | ||
| Glimmer | 3.0.2 | Bioinformatics | zcluster | ||
| bam2fastq | 1.1.0 | Bioinformatics | zcluster | ||
| quake | 0.3.4 | Bioinformatics | zcluster | ||
| Jellyfish | 1.1.5 | Bioinformatics | zcluster | ||
| BiSS | 0.0.1 | Bioinformatics | zcluster | ||
| SomaticCall | 42811 | Bioinformatics | zcluster | ||
| IGV | 2.1.23 | Bioinformatics | zcluster | ||
| igb | 6.7.3 | Bioinformatics | zcluster | ||
| PeakSplitter | 1.0 | Bioinformatics | zcluster | ||
| CEAS | 1.0.2 | Bioinformatics | zcluster | ||
| OpenBUGS | 3.2.2 | Statistics | zcluster | ||
| VelvetOptimiser | 2.2.4 | Bioinformatics | zcluster | ||
| LLVM-Clang | 3.1 | Utilities | zcluster | ||
| sickle | 1.200 | Bioinformatics | zcluster | ||
| GenomeMapper | 0.4.3 (Version for SHORE/WMD3) | Bioinformatics | zcluster | ||
| SHORE | 0.8 | Bioinformatics | zcluster | ||
| PASHA | 1.0.6 | Bioinformatics | zcluster | ||
| RAxML-Light | 1.0.5 | Bioinformatics | zcluster | ||
| ExaML | 315576 | Bioinformatics | zcluster | ||
| riboPicker | 0.4.3 | Bioinformatics | zcluster | ||
| RMBlast | 2.2.27 | Bioinformatics | zcluster | ||
| RSEM | 1.1.21 | 1.2.0 | Bioinformatics | ||
| MEAD | 2.2.9 | Computational Chemistry | zcluster | ||
| Open Babel | 2.3.1 | Computational Chemistry | zcluster | ||
| SpliceGrapher | 0.2.0 | Bioinformatics | zcluster | ||
| wigToBigWig | v 4 | Bioinformatics | zcluster | ||
| MSA | 3.8.1b | Bioinformatics | zcluster | ||
| libsequence | 1.7.4 | Bioinformatics | zcluster | ||
| GAMESS | May2012R1 | with XMVB 2.0. | Computational Chemistry | ||
| RECON | 1.05 | Bioinformatics | zcluster | ||
| CEGMA | 2.4.010312 | Bioinformatics | zcluster | ||
| SSPACE | 2.0 | Bioinformatics | zcluster | ||
| RSAT | 1.0 | Bioinformatics | zcluster | ||
| RTD | git at 11/28/2012 | Bioinformatics | zcluster | ||
| ddRADseq | Bioinformatics | zcluster | |||
| usearch | v6.0.30 | Bioinformatics | zcluster | ||
| GapFiller | 1.11 | Bioinformatics | zcluster | ||
| InStruct | 3.2.09 | Bioinformatics | zcluster | ||
| NovelSeq | 1.0.2 | Bioinformatics | zcluster | ||
| SOAPdenovo2 | r223 | Bioinformatics | zcluster | ||
| Minia | 1.4683 | Bioinformatics | zcluster | ||
| ea-utils | 1.1.2-537 | Bioinformatics | zcluster |