Software-old

Installed Software List

Last updated 2013-01-14.

Note: Click on the icons to the right of the column headings to sort the table.

Name	Version	Website	Category	Cluster
454 Software	+version+	+website+	+category+	+cluster+
aaarf	+version+	+website+	+category+	+cluster+
ABySS	+version+	+website+	+category+	+cluster+
ABySS-rcluster	+version+	+website+	+category+	+cluster+
AlignACE	+version+	+website+	+category+	+cluster+
ALLPATHS-LG	+version+	+website+	+category+	+cluster+
amos	+version+	+website+	+category+	+cluster+
AmpliconNoise	+version+	+website+	+category+	+cluster+
ARB	+version+	+website+	+category+	+cluster+
Artemis	+version+	+website+	+category+	+cluster+
AUGUSTUS	+version+	+website+	+category+	+cluster+
AVID	+version+	+website+	+category+	+cluster+
Bali-phy-rcluster	+version+	+website+	+category+	+cluster+
bam2fastq	+version+	+website+	+category+	+cluster+
BEAST	+version+	+website+	+category+	+cluster+
454 Software	+version+	+website+	+category+	+cluster+
aaarf	+version+	+website+	+category+	+cluster+
ABySS	+version+	+website+	+category+	+cluster+
ABySS-rcluster	+version+	+website+	+category+	+cluster+
AlignACE	+version+	+website+	+category+	+cluster+
ALLPATHS-LG	+version+	+website+	+category+	+cluster+
amos	+version+	+website+	+category+	+cluster+
AmpliconNoise	+version+	+website+	+category+	+cluster+
ARB	+version+	+website+	+category+	+cluster+
Artemis	+version+	+website+	+category+	+cluster+
AUGUSTUS	+version+	+website+	+category+	+cluster+
AVID	+version+	+website+	+category+	+cluster+
Bali-phy-rcluster	+version+	+website+	+category+	+cluster+
bam2fastq	+version+	+website+	+category+	+cluster+
BEAST	+version+	+website+	+category+	+cluster+
BEDTools	+version+	+website+	+category+	+cluster+
BEST Bayesian	+version+	+website+	+category+	+cluster+
BEST Binding	+version+	+website+	+category+	+cluster+
BFast	+version+	+website+	+category+	+cluster+
Bioconductor	+version+	+website+	+category+	+cluster+
BioPerl	+version+	+website+	+category+	+cluster+
BioPython	+version+	+website+	+category+	+cluster+
Bismark Bisulfite Mapper	+version+	+website+	+category+	+cluster+
BiSS	+version+	+website+	+category+	+cluster+
Blastall	+version+	+website+	+category+	+cluster+
Blat	+version+	+website+	+category+	+cluster+
BMGE	+version+	+website+	+category+	+cluster+
bowtie	+version+	+website+	+category+	+cluster+
bowtie2	+version+	+website+	+category+	+cluster+
boxshade	+version+	+website+	+category+	+cluster+
breakdancer	+version+	+website+	+category+	+cluster+
brownie	+version+	+website+	+category+	+cluster+
BS Seeker	+version+	+website+	+category+	+cluster+
Burrows-Wheeler Aligner (BWA)	+version+	+website+	+category+	+cluster+
CAP3-rcluster IOB	+version+	+website+	+category+	+cluster+
cd-hit	+version+	+website+	+category+	+cluster+
cdbfasta	+version+	+website+	+category+	+cluster+
CEAS	+version+	+website+	+category+	+cluster+
CEGMA	+version+	+website+	+category+	+cluster+
CELLO	+version+	+website+	+category+	+cluster+
circos	+version+	+website+	+category+	+cluster+
ClustalW	+version+	+website+	+category+	+cluster+
Coding Potential Calculator	+version+	+website+	+category+	+cluster+
Codon Usage	+version+	+website+	+category+	+cluster+
CodonW	+version+	+website+	+category+	+cluster+
CONSEL	+version+	+website+	+category+	+cluster+
consensus-v6c	+version+	+website+	+category+	+cluster+
cortex_con	+version+	+website+	+category+	+cluster+
cortex_var	+version+	+website+	+category+	+cluster+
Count	+version+	+website+	+category+	+cluster+
count-rcluster	+version+	+website+	+category+	+cluster+
CREST	+version+	+website+	+category+	+cluster+
cufflinks	+version+	+website+	+category+	+cluster+
cutadapt	+version+	+website+	+category+	+cluster+
DLCoal	+version+	+website+	+category+	+cluster+
ea-utils	+version+	+website+	+category+	+cluster+
edena	+version+	+website+	+category+	+cluster+
EMBOSS-rcluster	+version+	+website+	+category+	+cluster+
emmix	+version+	+website+	+category+	+cluster+
ESTScan	+version+	+website+	+category+	+cluster+
evm (EVidenceModeler)	+version+	+website+	+category+	+cluster+
ExaML	+version+	+website+	+category+	+cluster+
exonerate	+version+	+website+	+category+	+cluster+
FAR	+version+	+website+	+category+	+cluster+
FAR (Flexible Adapter Remover)	+version+	+website+	+category+	+cluster+
FASTA	+version+	+website+	+category+	+cluster+
fasta format cleaner	+version+	+website+	+category+	+cluster+
FastQC	+version+	+website+	+category+	+cluster+
fasttree	+version+	+website+	+category+	+cluster+
FastX	+version+	+website+	+category+	+cluster+
FIRE	+version+	+website+	+category+	+cluster+
FitModel	+version+	+website+	+category+	+cluster+
FLASH	+version+	+website+	+category+	+cluster+
FrameDP	+version+	+website+	+category+	+cluster+
GapFiller	+version+	+website+	+category+	+cluster+
gatk	+version+	+website+	+category+	+cluster+
Gblocks	+version+	+website+	+category+	+cluster+
Gblocks-rcluster	+version+	+website+	+category+	+cluster+
GCG (Wisconsin Package)	+version+	+website+	+category+	+cluster+
GeneMark	+version+	+website+	+category+	+cluster+
Genezilla	+version+	+website+	+category+	+cluster+
Genome	+version+	+website+	+category+	+cluster+
GenomeMapper	+version+	+website+	+category+	+cluster+
GenomeTools	+version+	+website+	+category+	+cluster+
gfftosam (BaseQV)	+version+	+website+	+category+	+cluster+
Glimmer	+version+	+website+	+category+	+cluster+
GlimmerHMM	+version+	+website+	+category+	+cluster+
gmap	+version+	+website+	+category+	+cluster+
gmap-gsnap	+version+	+website+	+category+	+cluster+
go-perl	+version+	+website+	+category+	+cluster+
gpu-blast	+version+	+website+	+category+	+cluster+
Hmmer	+version+	+website+	+category+	+cluster+
htseq	+version+	+website+	+category+	+cluster+
I-TASSER	+version+	+website+	+category+	+cluster+
IDEG	+version+	+website+	+category+	+cluster+
igb	+version+	+website+	+category+	+cluster+
IGV	+version+	+website+	+category+	+cluster+
IMa	+version+	+website+	+category+	+cluster+
indel-Seq-Gen	+version+	+website+	+category+	+cluster+
InStruct	+version+	+website+	+category+	+cluster+
inteRNA	+version+	+website+	+category+	+cluster+
iParameterEstimation (iPE)	+version+	+website+	+category+	+cluster+
iprscan (InterProScan)	+version+	+website+	+category+	+cluster+
iscan	+version+	+website+	+category+	+cluster+
Jellyfish	+version+	+website+	+category+	+cluster+
k-link	+version+	+website+	+category+	+cluster+
kaas	+version+	+website+	+category+	+cluster+
KiNG	+version+	+website+	+category+	+cluster+
LAGAN	+version+	+website+	+category+	+cluster+
LASTZ	+version+	+website+	+category+	+cluster+
LDDist	+version+	+website+	+category+	+cluster+
LDhat	+version+	+website+	+category+	+cluster+
libsequence	+version+	+website+	+category+	+cluster+
LocARNA	+version+	+website+	+category+	+cluster+
lsa	+version+	+website+	+category+	+cluster+
LUCY-rcluster	+version+	+website+	+category+	+cluster+
macs	+version+	+website+	+category+	+cluster+
mafft	+version+	+website+	+category+	+cluster+
maker	+version+	+website+	+category+	+cluster+
MAQ	+version+	+website+	+category+	+cluster+
MaTogff	+version+	+website+	+category+	+cluster+
MCL	+version+	+website+	+category+	+cluster+
MCL-rcluster	+version+	+website+	+category+	+cluster+
MDscan	+version+	+website+	+category+	+cluster+
megan	+version+	+website+	+category+	+cluster+
MEME	+version+	+website+	+category+	+cluster+
MFOLD	+version+	+website+	+category+	+cluster+
Migrate	+version+	+website+	+category+	+cluster+
Minia	+version+	+website+	+category+	+cluster+
MIRA	+version+	+website+	+category+	+cluster+
miRanda	+version+	+website+	+category+	+cluster+
mosaik	+version+	+website+	+category+	+cluster+
MOTHUR	+version+	+website+	+category+	+cluster+
MOTHUR-rcluster	+version+	+website+	+category+	+cluster+
mpiblast	+version+	+website+	+category+	+cluster+
MrBayes	+version+	+website+	+category+	+cluster+
mrfast	+version+	+website+	+category+	+cluster+
MSA	+version+	+website+	+category+	+cluster+
MSBlast	+version+	+website+	+category+	+cluster+
MSPcrunch	+version+	+website+	+category+	+cluster+
Multiz	+version+	+website+	+category+	+cluster+
MUMmer	+version+	+website+	+category+	+cluster+
MUSCLE	+version+	+website+	+category+	+cluster+
mVISTA	+version+	+website+	+category+	+cluster+
MyScanACE	+version+	+website+	+category+	+cluster+
NCBI Blast	+version+	+website+	+category+	+cluster+
NCBI Blast +	+version+	+website+	+category+	+cluster+
ncbi blast parsers	+version+	+website+	+category+	+cluster+
NCBI_database	+version+	+website+	+category+	+cluster+
Newbler	+version+	+website+	+category+	+cluster+
ngs_backbone	+version+	+website+	+category+	+cluster+
NH PhyloBayes	+version+	+website+	+category+	+cluster+
nhPhyML	+version+	+website+	+category+	+cluster+
NovelSeq	+version+	+website+	+category+	+cluster+
NovoAlign	+version+	+website+	+category+	+cluster+
nupack	+version+	+website+	+category+	+cluster+
Oases	+version+	+website+	+category+	+cluster+
opal	+version+	+website+	+category+	+cluster+
OSPREY	+version+	+website+	+category+	+cluster+
p4	+version+	+website+	+category+	+cluster+
pagan	+version+	+website+	+category+	+cluster+
PAML	+version+	+website+	+category+	+cluster+
pandaseq	+version+	+website+	+category+	+cluster+
Papara_nt	+version+	+website+	+category+	+cluster+
PASHA	+version+	+website+	+category+	+cluster+
PeakSplitter	+version+	+website+	+category+	+cluster+
pebl	+version+	+website+	+category+	+cluster+
pfamDNASearch	+version+	+website+	+category+	+cluster+
Pfam_scan	+version+	+website+	+category+	+cluster+
pftools	+version+	+website+	+category+	+cluster+
phred/phrap/conced	+version+	+website+	+category+	+cluster+
PHYLIP	+version+	+website+	+category+	+cluster+
PhyloBayes	+version+	+website+	+category+	+cluster+
PHYML	+version+	+website+	+category+	+cluster+
picard	+version+	+website+	+category+	+cluster+
PIIM	+version+	+website+	+category+	+cluster+
plink	+version+	+website+	+category+	+cluster+
PolyBayes-rcluster	+version+	+website+	+category+	+cluster+
pplacer	+version+	+website+	+category+	+cluster+
prank	+version+	+website+	+category+	+cluster+
primegsr	+version+	+website+	+category+	+cluster+
Primer3	+version+	+website+	+category+	+cluster+
PrIMETV	+version+	+website+	+category+	+cluster+
PSLDoc	+version+	+website+	+category+	+cluster+
PSORTb	+version+	+website+	+category+	+cluster+
Pyrobayes,Mosaik,GigaBayes,	+version+	+website+	+category+	+cluster+
pysam	+version+	+website+	+category+	+cluster+
Qiime	+version+	+website+	+category+	+cluster+
Qiime-rcluster	+version+	+website+	+category+	+cluster+
QTL Cartographer	+version+	+website+	+category+	+cluster+
quake	+version+	+website+	+category+	+cluster+
RactIP	+version+	+website+	+category+	+cluster+
RAxML	+version+	+website+	+category+	+cluster+
RAxML-Light	+version+	+website+	+category+	+cluster+
Ray	+version+	+website+	+category+	+cluster+
RBR	+version+	+website+	+category+	+cluster+
RCCBatchBlast	+version+	+website+	+category+	+cluster+
RECON	+version+	+website+	+category+	+cluster+
RECON	+version+	+website+	+category+	+cluster+
RepeatFinder	+version+	+website+	+category+	+cluster+
Repeatmasker	+version+	+website+	+category+	+cluster+
RepeatModeler	+version+	+website+	+category+	+cluster+
RepeatScout	+version+	+website+	+category+	+cluster+
Reputer	+version+	+website+	+category+	+cluster+
riboPicker	+version+	+website+	+category+	+cluster+
RMBlast	+version+	+website+	+category+	+cluster+
RNAz	+version+	+website+	+category+	+cluster+
rnnotator	+version+	+website+	+category+	+cluster+
Roche	+version+	+website+	+category+	+cluster+
RSAT	+version+	+website+	+category+	+cluster+
RSEM	+version+	+website+	+category+	+cluster+
RUM	+version+	+website+	+category+	+cluster+
samtools	+version+	+website+	+category+	+cluster+
SATé	+version+	+website+	+category+	+cluster+
scipio	+version+	+website+	+category+	+cluster+
SeqClean	+version+	+website+	+category+	+cluster+
SEQuel	+version+	+website+	+category+	+cluster+
SHE-RA	+version+	+website+	+category+	+cluster+
SHORE	+version+	+website+	+category+	+cluster+
shorha	+version+	+website+	+category+	+cluster+
SHRIMP	+version+	+website+	+category+	+cluster+
sickle	+version+	+website+	+category+	+cluster+
SiZer	+version+	+website+	+category+	+cluster+
slclust	+version+	+website+	+category+	+cluster+
SNAP	+version+	+website+	+category+	+cluster+
snowhite	+version+	+website+	+category+	+cluster+
snpEff	+version+	+website+	+category+	+cluster+
SNVMix2	+version+	+website+	+category+	+cluster+
soap2	+version+	+website+	+category+	+cluster+
SOAPdenovo	+version+	+website+	+category+	+cluster+
SOAPdenovo-trans	+version+	+website+	+category+	+cluster+
SOAPdenovo2	+version+	+website+	+category+	+cluster+
socs	+version+	+website+	+category+	+cluster+
SomaticCall	+version+	+website+	+category+	+cluster+
spaln	+version+	+website+	+category+	+cluster+
spimap	+version+	+website+	+category+	+cluster+
SpliceGrapher	+version+	+website+	+category+	+cluster+
splign	+version+	+website+	+category+	+cluster+
SRA	+version+	+website+	+category+	+cluster+
SSAHA2	+version+	+website+	+category+	+cluster+
SSPACE	+version+	+website+	+category+	+cluster+
stacks	+version+	+website+	+category+	+cluster+
STAMP	+version+	+website+	+category+	+cluster+
STEM	+version+	+website+	+category+	+cluster+
strauto	+version+	+website+	+category+	+cluster+
structure	+version+	+website+	+category+	+cluster+
SUPERSPLAT	+version+	+website+	+category+	+cluster+
SVDetect	+version+	+website+	+category+	+cluster+
SVM_Light	+version+	+website+	+category+	+cluster+
T-Coffee	+version+	+website+	+category+	+cluster+
T-Coffee-rcluster	+version+	+website+	+category+	+cluster+
tabix	+version+	+website+	+category+	+cluster+
tagdust	+version+	+website+	+category+	+cluster+
Tandem Repeats Finder	+version+	+website+	+category+	+cluster+
tassel	+version+	+website+	+category+	+cluster+
tgicl	+version+	+website+	+category+	+cluster+
TIGER	+version+	+website+	+category+	+cluster+
tophat	+version+	+website+	+category+	+cluster+
topHat-fusion-rcluster	+version+	+website+	+category+	+cluster+
Tracer	+version+	+website+	+category+	+cluster+
TreeBeST	+version+	+website+	+category+	+cluster+
TreeView X	+version+	+website+	+category+	+cluster+
Trinity	+version+	+website+	+category+	+cluster+
tRNAscan-SE	+version+	+website+	+category+	+cluster+
twinScan/n-Scan	+version+	+website+	+category+	+cluster+
UNAFold	+version+	+website+	+category+	+cluster+
usearch	+version+	+website+	+category+	+cluster+
vcftools	+version+	+website+	+category+	+cluster+
velvet	+version+	+website+	+category+	+cluster+
VelvetOptimiser	+version+	+website+	+category+	+cluster+
ViennaRNA	+version+	+website+	+category+	+cluster+
vmatch	+version+	+website+	+category+	+cluster+
wcdest	+version+	+website+	+category+	+cluster+
wigToBigWig	+version+	+website+	+category+	+cluster+
WISE2	+version+	+website+	+category+	+cluster+
WU Blast	+version+	+website+	+category+	+cluster+
yasra	+version+	+website+	+category+	+cluster+