Software: Difference between revisions
m (Shtsai moved page Software-new to Software without leaving a redirect) |
No edit summary |
||
| Line 1: | Line 1: | ||
Below is a | |||
On Sapelo2 and on the Teaching cluster users have the option to install their own software or use software installed centrally on the cluster by the GACRC staff. Centrally-installed software on Sapelo2 and on the Teaching cluster will typically be in one of two formats: a software module or a Singularity container. | |||
Detailed information on how to find which software packages are installed on Sapelo2 and how to access them is described in [[Software on Sapelo2]]. | |||
Below is a very limited list of software packages installed on Sapelo2 and on the Teaching cluster. We only intend to make an application page for software packages that requires extra documentation not covered in [[Sofwware on Sapelo2]]. To view a list of all modules installed on Sapelo2/Teaching, along with a short description of each module, please run the following command on Sapelo2/Teaching: | |||
<pre class="gcommand"> | <pre class="gcommand"> | ||
module spider | module spider | ||
| Line 6: | Line 11: | ||
You can also use the command above to search for a specific application. For more information, please see [[Lmod]]. | You can also use the command above to search for a specific application. For more information, please see [[Lmod]]. | ||
'''Note:''' Although we have not made individual software pages for the applications installed on | '''Note:''' Although we have not made individual software pages for the applications installed on Sapelo2, there are currently over 600 software packages installed there. For information on software installed there, please see [[Software on Sapelo2]]. | ||
==Installed Software | ==Partial List of Installed Software== | ||
Last updated '''{{REVISIONYEAR}}-{{REVISIONMONTH}}-{{REVISIONDAY2}}'''. | Last updated '''{{REVISIONYEAR}}-{{REVISIONMONTH}}-{{REVISIONDAY2}}'''. | ||
'''Note:''' Click on the icons to the right of the column headings to sort the table. | '''Note:''' Click on the icons to the right of the column headings to sort the table. | ||
Revision as of 22:33, 27 October 2020
On Sapelo2 and on the Teaching cluster users have the option to install their own software or use software installed centrally on the cluster by the GACRC staff. Centrally-installed software on Sapelo2 and on the Teaching cluster will typically be in one of two formats: a software module or a Singularity container.
Detailed information on how to find which software packages are installed on Sapelo2 and how to access them is described in Software on Sapelo2.
Below is a very limited list of software packages installed on Sapelo2 and on the Teaching cluster. We only intend to make an application page for software packages that requires extra documentation not covered in Sofwware on Sapelo2. To view a list of all modules installed on Sapelo2/Teaching, along with a short description of each module, please run the following command on Sapelo2/Teaching:
module spider
You can also use the command above to search for a specific application. For more information, please see Lmod.
Note: Although we have not made individual software pages for the applications installed on Sapelo2, there are currently over 600 software packages installed there. For information on software installed there, please see Software on Sapelo2.
Partial List of Installed Software
Last updated 2020-10-27. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
| Name | Version | Category | Cluster | Top |
|---|---|---|---|---|
| Biopython | 1.75 | Bioinformatics | Teaching | 
|
| BLAST+ | 2.9.0 | Bioinformatics | Teaching |
|
| BLAST | 2.2.26 | Bioinformatics | Teaching |
|
| Bowtie2 | 2.3.5.1, 2.4.1 | Bioinformatics | Teaching |
|
| BUSCO | 4.0.5, 4.0.6 | Bioinformatics | Sap2test |
|
| Cytoscape | 3.7.2 | Bioinformatics | Teaching |
|
| GAUSSIAN | 16 | Chemistry | Teaching |
|
| GaussView | 6.1 | Chemistry | Teaching |
|
| HISAT2 | 2.1.0 | Bioinformatics | Teaching |
|
| IQ-Tree | 1.6.12 | Bioinformatics | Teaching |
|
| Java | 1.8.0_144, 1.8.0_241, 11.0.2 | Programming | Teaching |
|
| Maker | 3.01.03 | Bioinformatics | Sap2test |
|
| PAML | 4.9i | Bioinformatics | Teaching |
|
| Perl | 5.30.0 | Programming | Teaching |
|
| Python | 3.7.4, 2.7.16 | Programming | Teaching |
|
| R | 4.0.0 | Statistics | Teaching |
|
| RAxML | 8.2.12 | Bioinformatics | Teaching |
|
| SAMtools | 0.1.20, 1.9, 1.10 | Bioinformatics | Teaching |
|
| StringTie | 2.1.1 | Bioinformatics | Teaching |
|