Software2: Difference between revisions

From Research Computing Center Wiki
Jump to navigation Jump to search
No edit summary
No edit summary
Line 90: Line 90:
| <span id="S">[[Stacks-Teaching|Stacks]]  || 2.0, 1.48|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| <span id="S">[[Stacks-Teaching|Stacks]]  || 2.0, 1.48|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| <span id="S">[[STAR-Teaching|STAR]]  || 2.6.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| <span id="S">[[STAR-Teaching|STAR]]  || 2.6.0c, 2.5.3a|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| <span id="Z"></span>[[Zbar-Sapelo|Zbar]] || 0.10 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| <span id="Z"></span>[[Zbar-Sapelo|Zbar]] || 0.10 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]

Revision as of 10:38, 10 August 2018

Installed Software List

Last updated 2018-08-10. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name Version Category Cluster
Artemis 17.0.1 Bioinformatics Teaching Up20.png
AUGUSTUS 3.2.3 Bioinformatics Teaching Up20.png
BCFtools 1.8, 1.6, 1.3.1 Bioinformatics Teaching Up20.png
BEDTools 2.26.0 Bioinformatics Teaching Up20.png
BioPerl 1.7.1 Bioinformatics Teaching Up20.png
Biopython 1.68 Bioinformatics Teaching Up20.png
BLAST 2.2.26 Bioinformatics Teaching Up20.png
BLAST+ 2.6.0 Bioinformatics Teaching Up20.png
Bowtie2 2.3.4.1, 2.3.3, 2.2.3 Bioinformatics Teaching Up20.png
BWA 0.7.17, 0.7.15 Bioinformatics Teaching Up20.png
Canu 1.7, 1.6, 1.5, 1.4 Bioinformatics Teaching Up20.png
Cufflinks 2.2.1 Bioinformatics Teaching Up20.png
DBG2OLC 20170208 Bioinformatics Teaching Up20.png
EMBOSS 6.6.0 Bioinformatics Teaching Up20.png
GAG 2.0.1 Bioinformatics Teaching Up20.png
GapFiller 2.1.1 Bioinformatics Teaching Up20.png
GATK 3.8-0, 3.4-0 Bioinformatics Teaching Up20.png
GeneMarkES 4.33 Bioinformatics Teaching Up20.png
Java 1.8.0_144, 1.8.0_141, 1.8.0_121, 1.8.0_112, 1.8.0_92 Programming Teaching Up20.png
MAFFT 7.313, 7.273, 7.130 Bioinformatics Teaching Up20.png
MUMmer 3.23 Bioinformatics Teaching Up20.png
OrthoFinder 2.1.2 Bioinformatics Teaching Up20.png
PAML 4.9h Bioinformatics Teaching Up20.png
Perl 5.26.1, 5.26.0, 5.24.1, 5.24.0, 5.20.3 Programming Teaching Up20.png
Picard 2.16.0 Bioinformatics Teaching Up20.png
Pilon 1.22 Bioinformatics Teaching Up20.png
Proovread 2.14.1 Bioinformatics Teaching Up20.png
Python 3.6.4, 3.5.2, 2.7.14, 2.7.12 Programming Teaching Up20.png
RAxML 8.2.11 Bioinformatics Teaching Up20.png
RepeatMasker 4.0.7 Bioinformatics Teaching Up20.png
RepeatModeler 1.0.11 Bioinformatics Teaching Up20.png
RepeatScout 1.05 Bioinformatics Teaching Up20.png
SAMtools 1.6, 1.3.1, 0.1.19 Bioinformatics Teaching Up20.png
SMRTLINK 5.1.0.26412, 5.0.1.9585 Bioinformatics Teaching Up20.png
SNAP-Zoe 20060728 Bioinformatics Teaching Up20.png
SnpEff 4.3t Bioinformatics Teaching Up20.png
SOAPdenovo2 r240 Bioinformatics Teaching Up20.png
SPAdes 3.11.1 Bioinformatics Teaching Up20.png
Stacks 2.0, 1.48 Bioinformatics Teaching Up20.png
STAR 2.6.0c, 2.5.3a Bioinformatics Teaching Up20.png
Zbar 0.10 Graphics Sapelo Up20.png
zlib 1.2.5, 1.2.8 Library Sapelo Up20.png
Zorro 2.2 Bioinformatics Zcluster Up20.png

Back To Top Up20.png

Retrieved from "https://wiki.gacrc.uga.edu/index.php?title=Software2&oldid=13067"