Software2

Installed Software List

Last updated 2018-08-10. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name	Version	Category	Cluster
Artemis	17.0.1	Bioinformatics	Teaching
AUGUSTUS	3.2.3	Bioinformatics	Teaching
BCFtools	1.8, 1.6, 1.3.1	Bioinformatics	Teaching
BEDTools	2.26.0	Bioinformatics	Teaching
BioPerl	1.7.1	Bioinformatics	Teaching
Biopython	1.68	Bioinformatics	Teaching
BLAST	2.2.26	Bioinformatics	Teaching
BLAST+	2.6.0	Bioinformatics	Teaching
Bowtie2	2.3.4.1, 2.3.3, 2.2.3	Bioinformatics	Teaching
BWA	0.7.17, 0.7.15	Bioinformatics	Teaching
Canu	1.7, 1.6, 1.5, 1.4	Bioinformatics	Teaching
Cufflinks	2.2.1	Bioinformatics	Teaching
DBG2OLC	20170208	Bioinformatics	Teaching
EMBOSS	6.6.0	Bioinformatics	Teaching
GAG	2.0.1	Bioinformatics	Teaching
GapFiller	2.1.1	Bioinformatics	Teaching
GATK	3.8-0, 3.4-0	Bioinformatics	Teaching
GeneMarkES	4.33	Bioinformatics	Teaching
Java	1.8.0_144, 1.8.0_141, 1.8.0_121, 1.8.0_112, 1.8.0_92	Programming	Teaching
MAFFT	7.313, 7.273, 7.130	Bioinformatics	Teaching
MUMmer	3.23	Bioinformatics	Teaching
OrthoFinder	2.1.2	Bioinformatics	Teaching
PAML	4.9h	Bioinformatics	Teaching
Perl	5.26.1, 5.26.0, 5.24.1, 5.24.0, 5.20.3	Programming	Teaching
Picard	2.16.0	Bioinformatics	Teaching
Pilon	1.22	Bioinformatics	Teaching
Proovread	2.14.1	Bioinformatics	Teaching
Python	3.6.4, 3.5.2, 2.7.14, 2.7.12	Programming	Teaching
RAxML	8.2.11	Bioinformatics	Teaching
RepeatMasker	4.0.7	Bioinformatics	Teaching
RepeatModeler	1.0.11	Bioinformatics	Teaching
RepeatScout	1.05	Bioinformatics	Teaching
SAMtools	1.6, 1.3.1, 0.1.19	Bioinformatics	Teaching
SMRTLINK	5.1.0.26412, 5.0.1.9585	Bioinformatics	Teaching
SNAP-Zoe	20060728	Bioinformatics	Teaching
SnpEff	4.3t	Bioinformatics	Teaching
SOAPdenovo2	r240	Bioinformatics	Teaching
SPAdes	3.11.1	Bioinformatics	Teaching
Zbar	0.10	Graphics	Sapelo
zlib	1.2.5, 1.2.8	Library	Sapelo
Zorro	2.2	Bioinformatics	Zcluster

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