YH-T-Template

Category

Bioinformatics 

Program On

Teaching

Version

2.0.6

Author / Distributor

Trinity 

Description

"" More details are at Trinity

Running Program

The last version of this application is at trinity

To use this version, please loads the module with

ml <!-- TEST_MODULE BEGIN --><!-- TEST_MODULE END --> 

Here is an example of a shell script, sub.sh, to run on at the batch queue:

#!/bin/bash
#SBATCH --job-name=j_trinity
#SBATCH --partition=batch
#SBATCH --mail-type=ALL
#SBATCH --mail-user=username@uga.edu
#SBATCH --ntasks=1
#SBATCH --mem=10gb
#SBATCH --time=08:00:00
#SBATCH --output=trinity.%j.out

cd $SLURM_SUBMIT_DIR
ml

[options]
   

In the real submission script, at least all the above underlined values need to be reviewed or to be replaced by the proper values.

Please refer to Running_Jobs_on_the_teaching_cluster, Run X window Jobs and Run interactive Jobs for more details of running jobs at Teaching cluster.

Here is an example of job submission command:

sbatch ./sub.sh 

Documentation

ml <!-- TEST_MODULE BEGIN --><!-- TEST_MODULE END --> 
<!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END --> <!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END -->

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Installation

Source code is obtained from Trinity

System

64-bit Linux