Software2: Difference between revisions

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| [[AUGUSTUS-Teaching|AUGUSTUS]]  ||3.2.3|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[BCFtools-Teaching|BCFtools]]  ||1.3.1 1.8 1.6 1.3.1, 1.8, 1.6, 1.3.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[BEDTools-Teaching|BEDTools]]  ||2.26.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[Biopython-Teaching|Biopython]]  ||1.68 1.68 1.68, 1.68, 1.68, 1.68, 1.68|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[BLAST-Teaching|BLAST]]  ||2.2.26|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[Bowtie2-Teaching|Bowtie2]]  ||2.2.3 2.3.4.1 2.3.3 2.2.3, 2.3.4.1, 2.3.3, 2.2.3|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[BWA-Teaching|BWA]]  ||0.7.15 0.7.17 0.7.15, 0.7.17, 0.7.15|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[canu-Teaching|Canu]]  ||1.4 1.7 1.6 1.5 1.4, 1.7, 1.6, 1.5, 1.4, 1.7, 1.6, 1.5, 1.4|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[GATK-Teaching|GATK]]  ||3.4-0 3.8-0 3.4-0, 3.8-0, 3.4-0, 3.8-0, 3.4-0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[Java-Teaching|Java]]  ||1.8.0_92 1.8.0_144 1.8.0_141 1.8.0_121 1.8.0_112 1.8.0_92, 1.8.0_144, 1.8.0_141, 1.8.0_121, 1.8.0_112, 1.8.0_92, 1.8.0_144, 1.8.0_141, 1.8.0_121, 1.8.0_112, 1.8.0_92|| [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[MAFFT-Teaching|MAFFT]]  ||7.130 7.313 7.273 7.130, 7.313, 7.273, 7.130, 7.313, 7.273, 7.130|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[Perl-Teaching|Perl]]  ||5.20.3 5.26.1 5.26.1 5.26.0 5.24.1 5.24.0 5.20.3, 5.26.1, 5.26.1, 5.26.0, 5.24.1, 5.24.0, 5.20.3, 5.26.1, 5.26.1, 5.26.0|| [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[Python-Teaching|Python]]  ||2.7.12 3.6.4 3.5.2 2.7.14 2.7.14 2.7.14 2.7.14 2.7.14 2.7.12, 3.6.4, 3.5.2, 2.7.14, 2.7.14, 2.7.14, 2.7.14, 2.7.14, 2.7.12|| [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| <span id="Q"></span>[[Qiime-Sapelo|Qiime]] || 1.9.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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| [[RAxML-Teaching|RAxML]]  ||8.2.11 8.2.11 8.2.11, 8.2.11, 8.2.11|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[SAMtools-Teaching|SAMtools]]  ||0.1.19 1.6 1.3.1 1.3.1 0.1.19, 1.6, 1.3.1, 1.3.1, 0.1.19|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[Stacks-Teaching|Stacks]]  ||1.48 2.0 1.48, 2.0, 1.48|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[STAR-Teaching|STAR]]  ||2.5.3a 2.6.0c 2.5.3a, 2.6.0c, 2.5.3a|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[STAR-Teaching|STAR]]  ||2.5.3a 2.6.0c 2.5.3a, 2.6.0c, 2.5.3a|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]

Revision as of 14:44, 6 August 2018

Installed Software List

Last updated 2018-08-06. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name Version Category Cluster
STAR 2.5.3a 2.6.0c 2.5.3a, 2.6.0c, 2.5.3a Bioinformatics Teaching Up20.png
SWIG 3.0.2 Programming Zcluster Up20.png
T-Coffee 11.00.8cbe486 Bioinformatics Sapelo Up20.png
T-REX 1.0 Bioinformatics Sapelo Up20.png
tabix 0.2.5 Bioinformatics Zcluster Up20.png
Zbar 0.10 Graphics Sapelo Up20.png
zlib 1.2.5, 1.2.8 Library Sapelo Up20.png
Zorro 2.2 Bioinformatics Zcluster Up20.png

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