Software-old: Difference between revisions

Revision as of 15:56, 18 April 2018

Installed Software List

Last updated 2018-04-18. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name	Version	Category	Cluster
4p	1.0	Bioinformatics	Sapelo
aaarf	1.0.0	Bioinformatics	Zcluster
ABINIT	6.12.1	Chemistry	Zcluster
ABySS	2.0.2	Bioinformatics	Sapelo
ABySS	1.9.0	Bioinformatics	Zcluster
ACT	03/27/2013	Bioinformatics	Zcluster
ADMIXTOOLS	1.1	Bioinformatics	Zcluster
Admixture	1.22	Bioinformatics	Zcluster
aeneas	1.7.3	Other	Sapelo
AFNI	17.3.05	Other	Sapelo2
AFNI	2013.04.26	Other	Zcluster
AGE	0.4	Bioinformatics	Sapelo
Allmaps	0.6.6	Bioinformatics	Sapelo
ALLPATHS-LG	47907	Bioinformatics	Zcluster
AMBER	14	Chemistry	Sapelo
AMBER	14	Chemistry	Sapelo2
AMBER	11, 12, 14	Chemistry	Zcluster
amos	3.1.0	Bioinformatics	Sapelo
amos	3.1.0	Bioinformatics	Zcluster
AmpliconNoise	1.25	Bioinformatics	Zcluster
Anaconda	2.2.0, 2.5.0, 3-2.2.0, 2-4.1.1	Programming	Sapelo
Anaconda	2.3.0, 2.5.0, 3-2.2.0	Programming	Zcluster
Anaconda2	4.2.0, 4.3.0, 4.4.0	Programming	Sapelo
Anaconda3	4.2.0, 4.3.0, 5.0.0	Programming	Sapelo
Anduril	1.2.23	Bioinformatics	Zcluster
ANI	2.0	Bioinformatics	Sapelo
ANNOgesic	0.6.17	Bioinformatics	Sapelo
ANNOVAR	2015Mar22	Bioinformatics	Zcluster
ANSYS	16.2	Engineering	Sapelo
apache-ant	1.9.6	Other	Sapelo
ARB	6.0.2	Bioinformatics	Zcluster
ARC	1.1.4-beta	Bioinformatics	Sapelo
Arlequin	3.5.1.3	Bioinformatics	Zcluster
ART	20160605	Bioinformatics	Sapelo
ART	20160605	Bioinformatics	Sapelo2
Artemis	17.0.1	Bioinformatics	Sapelo2
Aspera	3.1.0.67054	Other	Zcluster
AStalavista	3.2	Bioinformatics	Sapelo
Atlas2	1.4.3 r158	Bioinformatics	Zcluster
augustus	3.2.3	Bioinformatics	Sapelo
AUGUSTUS	3.2.3	Bioinformatics	Sapelo2
AUGUSTUS	3.2.3	Bioinformatics	Zcluster
BAGEL	2016.12.14, 2017.02.13	Chemistry	Sapelo
BaitsTools	1.0	Bioinformatics	Sapelo
bam-readcount	0.8.0	Bioinformatics	Sapelo
BamBam	1.4	Bioinformatics	Zcluster
bam2fastq	1.1.0	Bioinformatics	Zcluster
Bamtools	2.4.0	Bioinformatics	Sapelo
BamTools	2.4.1	Bioinformatics	Sapelo2
Banjo	2.2.0	Bioinformatics	Zcluster
basespace-cli	0.8.10	Bioinformatics	Sapelo
Batchsub	1.0	Bioinformatics	Zcluster
BayeScan	2.1	Bioinformatics	Zcluster
Bazel	0.4.5	Other	Sapelo
BBMap	35.82	Bioinformatics	Sapelo
BBMap	37.67	Bioinformatics	Sapelo2
BBMap	35.66	Bioinformatics	Zcluster
bcftools	1.6	Bioinformatics	Sapelo
bcl2fastq	2.17.1.14	Bioinformatics	Sapelo
bcl2fastq	1.8.4, 2.16.0.10, 2.17.1.14	Bioinformatics	Zcluster
bcl2fastq-brwnj	10262015	Bioinformatics	Zcluster
BEAST	2.4.1	Bioinformatics	Sapelo
Beast	2.4.8pre	Bioinformatics	Sapelo2
BEAST	2.4.1	Bioinformatics	Zcluster
BEDops	2.4.14	Bioinformatics	Sapelo
BEDops	2.4.20	Bioinformatics	Zcluster
BEDTools	2.24.0, 2.25.0 2.26.0	Bioinformatics	Sapelo
BEDTools	2.26.0	Bioinformatics	Sapelo2
BEDTools	2.24.0, 2.25.0	Bioinformatics	Zcluster
BLAST+	2.6.0	Bioinformatics	Sapelo2
BLAST	2.2.26	Bioinformatics	Sapelo2
BEST	2.3.1	Bioinformatics	Sapelo
BEST	2.3.1	Bioinformatics	Zcluster
bfast	0.7.0	Bioinformatics	Zcluster
BiBench	0.2	[[:Category:Bioinformatics\|Bioinformatics]	Sapelo
Bio++ Program Suite	2.2.0	Bioinformatics	Zcluster
bioawk	1.0	[[:Category:Bioinformatics\|Bioinformatics]	Sapelo
Bioconductor	2.11, 2.13	Bioinformatics	Zcluster
BioPerl	1.6.923	Bioinformatics	Sapelo
BioPerl	1.7.1	Bioinformatics	Sapelo2
BioPerl	1.61	Bioinformatics	Zcluster
biopy	0.1.8	Bioinformatics	Zcluster
BioPython	1.66	Bioinformatics	Sapelo
BioPython	1.68	Bioinformatics	Sapelo2
BioPython	1.64	Bioinformatics	Zcluster
biotoolbox	1.22	Bioinformatics	Zcluster
Bismark	0.16.3	Bioinformatics	Sapelo
Bismark Bisulfite Mapper	0.14.0	Bioinformatics	Zcluster
BiSS	0.0.1	Bioinformatics	Zcluster
BLAS	3.0	Math Library	Zcluster
BLASR	1.3.1	Bioinformatics	Zcluster
Blast2lca	0.8	Bioinformatics	Sapelo
Blat	36	Bioinformatics	Sapelo
BLAT	3.5	Bioinformatics	Sapelo2
Blat	3.5	Bioinformatics	Zcluster
BMGE	1.1	Bioinformatics	Zcluster
Boost	1.47.0, 1.57.0, 1.59.0	Library	Sapelo
Boost	1.54.0	Library	Zcluster
bowtie	1.1.1	Bioinformatics	Sapelo
Bowtie	1.2.2	Bioinformatics	Sapelo2
bowtie	1.1.0	Bioinformatics	Zcluster
bowtie2	2.2.4	Bioinformatics	Sapelo
bowtie2	2.3.3	Bioinformatics	Sapelo2
bowtie2	2.2.3, 2.2.9	Bioinformatics	Zcluster
BP&P	4.0	Bioinformatics	Sapelo
BP&P	2.2, 3, 3.1, 3.2	Bioinformatics	Zcluster
breakdancer	1.1.2_2013_03_08	Bioinformatics	Sapelo
BreakDancer	1.4.5-foss-2016b	Bioinformatics	Sapelo2
breakdancer	1.1.2_2013_03_08	Bioinformatics	Zcluster
bridger	2014-12-01	Bioinformatics	Zcluster
brownie	2.1.2	Bioinformatics	Zcluster
BS Seeker	Dec 113	Bioinformatics	Zcluster
BS Seeker2	2.1.1	Bioinformatics	Sapelo
BS Seeker2	2.1.1	Bioinformatics	Zcluster
BUCKy	1.4.3	Bioinformatics	Zcluster
BUSCO	3.0.2	Bioinformatics	Sapelo
Burrows-Wheeler Aligner (BWA)	0.7.10, 0.7.15	Bioinformatics	Sapelo
BWA	0.7.15, 0.7.17	Bioinformatics	Sapelo2
Burrows-Wheeler Aligner (BWA)	0.7.10	Bioinformatics	Zcluster
bx-python	06/24/2013	Bioinformatics	Zcluster
cadaver	0.23.3	Bioinformatics	Zcluster
Cafe	3.1	Bioinformatics	Zcluster
Caffe	12.04.2015	Other	Sapelo
Caffe	04082018	Other	Sapelo2
Caffe	11.26.2014	Other	Zcluster
Cairo	1.10.0	Bioinformatics	Sapelo
canu	1.4	Bioinformatics	Sapelo
canu	1.7	Bioinformatics	Sapelo2
Canu	1.4	Bioinformatics	Zcluster
CAP-miRSeq	01/2014	Bioinformatics	Zcluster
cap3	03/09/2015	Bioinformatics	Sapelo
cap3	10/2011	Bioinformatics	Zcluster
casava	1.8.2	Bioinformatics	Zcluster
cblas	3.0	Math Library	Zcluster
cdhit	4.6.7	Bioinformatics	Sapelo
CD-HIT	4.6.8	Bioinformatics	Sapelo2
cd-hit	4.6.1	Bioinformatics	Zcluster
cdbfasta	04282012	Bioinformatics	Zcluster
cdbtools	06172013	Bioinformatics	Zcluster
CDNA_Cupcake	3.9	Bioinformatics	Sapelo
CEAS	1.0.2	Bioinformatics	Zcluster
CEGMA	2.5	Bioinformatics	Zcluster
celera	8.1	Bioinformatics	Zcluster
CellProfiler	2.2.0	Bioinformatics	Sapelo
censor	4.2.29	Bioinformatics	Sapelo
Centrifuge	2.3.2	Bioinformatics	Sapelo
CFOUR	1.2, 2.00-beta	Chemistry	Sapelo
CFOUR	beta, 1.2	Chemistry	Zcluster
CGAT	0.2.4	Bioinformatics	Sapelo
CGmapTools	0.0.3b	Bioinformatics	Sapelo
CheckM	1.0.5	Bioinformatics	Sapelo
CheckM	1.0.5	Bioinformatics	Zcluster
Check	0.10.0	Programming	Sapelo
ChromHMM	1.0	Bioinformatics	Zcluster
Chromosomer	0.1.4a	Bioinformatics	Sapelo
CIRCexplorer2	2.2.3	Bioinformatics	Sapelo
circlator	1.4.1	Bioinformatics	Sapelo
circoletto	21.10.13	Bioinformatics	Zcluster
circos	0.69	Bioinformatics	Sapelo
Circos	0.69-6	Bioinformatics	Sapelo2
circos	0.64	Bioinformatics	Zcluster
cisa	20140304	Bioinformatics	Sapelo
cisgenome	2.0	Bioinformatics	Zcluster
CLAPACK	3.2.1	Math Library	Zcluster
cleaveland4	4.4	Bioinformatics	Sapelo
CLUMPP	1.1.2	Bioinformatics	Zcluster
Clustal-Omega	1.2.4	Bioinformatics	Sapelo2
Clustal-Omega	1.2.1	Bioinformatics	Zcluster
ClustalW	1.83	Bioinformatics	Sapelo
ClustalW2	2.1	Bioinformatics	Sapelo2
ClustalW	2.1	Bioinformatics	Zcluster
CLUSTER	3.0	Bioinformatics	Zcluster
clusteringConsensus	1.02	Bioinformatics	Sapelo
cmake	2.8.12.2, 3.0.2, 3.7.2, 3.9.3	Other	Sapelo
CMake	3.8.0	Other	Sapelo2
cnv-seq	03132017	Bioinformatics	Sapelo
CNVnator	0.3.3	Bioinformatics	Sapelo
CNVnator	0.3.3	Bioinformatics	Sapelo2
CNVnator	0.2.7	Bioinformatics	Zcluster
cnv-seq	0.2-7	Bioinformatics	Zcluster
Coding Potential Calculator	0.9-r2	Bioinformatics	Zcluster
CoMap	1.4.1	Bioinformatics	Zcluster
Conclustador	0.4a	Bioinformatics	Zcluster
Consed	28.0	Bioinformatics	Zcluster
CONSEL	0.20	Bioinformatics	Sapelo
CONSEL	v0.20	Bioinformatics	Zcluster
Conspred	v1.32	Bioinformatics	Sapelo
CORMA	5.21	Chemistry	Zcluster
cortex_con	0.04c	Bioinformatics	Zcluster
cortex_var	1.0.5.21	Bioinformatics	Sapelo
cortex_var	1.0.5.3	Bioinformatics	Zcluster
Count	2010-04-02	Bioinformatics	Zcluster
CPLEX	12.6.3	Engineering	Sapelo
CRB-BLAST	0.3.2	Bioinformatics	Zcluster
CREST	1.0	Bioinformatics	Zcluster
Croco_tools	1.0	Other	Sapelo
CrossMap	0.2.5	Bioinformatics	Sapelo
CrossMap	0.1.5	Bioinformatics	Zcluster
ctrax	0.3.2	Other	Zcluster
CUDA	5.0.35, 6.5.14, 7.5.18, 8.0.61	Programming	Sapelo
CUDA	7.0.28, 7.5.18, 8.0.61, 8.0.61_375.26-GCC-5.4.0-2.26, 9.0.176	Programming	Sapelo2
CUDA	4.0.17, 4.2.9, 5.0.35, 6.0.37, 6.5.14	Programming	Zcluster
cufflinks	2.2.1	Bioinformatics	Sapelo
Cufflinks	2.2.1	Bioinformatics	Sapelo2
cufflinks	2.2.1	Bioinformatics	Zcluster
curl	7.15.5, 7.47.1	Other	Zcluster
cURL	7.49.1	Other	Sapelo2
Cutadapt	1.14	Bioinformatics	Sapelo
cutadapt	1.9.1	Bioinformatics	Sapelo2
cutadapt	1.9.dev1	Bioinformatics	Zcluster
cv2	3.3.0.10	Other	Sapelo
CWEB	3.64	Other	Zcluster
CytoScape	3.3.0	Bioinformatics	Sapelo
Danpos2	2.2.2	Bioinformatics	Sapelo
Danpos2	2.2.2	Bioinformatics	Zcluster
datamash	1.0.7	Other	Sapelo
datamash	1.0.6	Other	Zcluster
Davinci	2.09	Bioinformatics	Zcluster
DBG2OLC	04062015	Bioinformatics	Zcluster
ddocent	2.2.16	Bioinformatics	Sapelo
ddRADseq	0.01	Bioinformatics	Zcluster
DeconSeq	0.4.3	Bioinformatics	Sapelo
DeconSeq	0.4.3	Bioinformatics	Zcluster
deepnet	20151013	Other	Sapelo
deepnet	20150820	Other	Zcluster
deeptools	2.3.1	Bioinformatics	Sapelo
deeptools	2.4.1	Bioinformatics	Zcluster
DeFCoM	1.0.1	Bioinformatics	Sapelo
DELLY	0.7.7	Bioinformatics	Sapelo
DELLY	0.5.5	Bioinformatics	Zcluster
demuxipy	1.0	Bioinformatics	Zcluster
dendropy	3.12.0	Bioinformatics	Sapelo
depict	140721	Bioinformatics	Sapelo
detect-NAHR	2015.09.16	Bioinformatics	Sapelo
DETONATE	20140123	Bioinformatics	Zcluster
DIAMOND	0.8.36	Bioinformatics	Sapelo
DIAMOND	1.0	Bioinformatics	Sapelo2
DIAMOND	0.8.36	Bioinformatics	Zcluster
DISCOVAR	49856	Bioinformatics	Zcluster
DISCOVAR De Novo	52488	Bioinformatics	Zcluster
DISCOVARdenovo	52488	Bioinformatics	Sapelo2
Distruct	2.2	Bioinformatics	Zcluster
diyabc	2.0.4	Bioinformatics	Zcluster
DLCoal	1.0	Bioinformatics	Zcluster
DLCpar	1.0	Bioinformatics	Sapelo
DLCpar	1.0	Bioinformatics	Sapelo2
dnaclust	rev54	Bioinformatics	Zcluster
dnasam	20100621	Bioinformatics	Zcluster
dDocent	1.2	Bioinformatics	Zcluster
drmma	0.5	Other	Zcluster
ea-utils	1.1.2-822	Bioinformatics	Zcluster
eclipse	4.3.1	Other, Programming	Zcluster
ECTools	08/18/2014	Other, Programming	Zcluster
edena	v3.130110	Bioinformatics	Zcluster
EDGE-pro	1.3.1	Bioinformatics	Zcluster
editag	1.1	Bioinformatics	Zcluster
EMBOSS	6.5.7	Bioinformatics	Sapelo
EMBOSS	6.6.0	Bioinformatics	Sapelo2
EMBOSS	6.5.7	Bioinformatics	Zcluster
emirge	0.61.1	Bioinformatics	Sapelo
emirge	0.61.1	Bioinformatics	Zcluster
EMMAX beta	beta	Bioinformatics	Sapelo2
emmax	beta-07Mar2010	Bioinformatics	Zcluster
emmix	1.3	Bioinformatics	Zcluster
EIGENSOFT	6.1.4	Bioinformatics	Sapelo2
EIGENSOFT	7.2.1	Bioinformatics	Zcluster
ensembl-tools	76	Bioinformatics	Zcluster
Entrez-Direct	11/18/2016	Bioinformatics	Zcluster
EPIG-Seq	v01	Bioinformatics	Sapelo
espeak	1.48.04	Other	Sapelo
ESTscan	3.0.3	Bioinformatics	Zcluster
evm (EVidenceModeler)	r2012-06-25	Bioinformatics	Zcluster
exabayes	1.4.1	Bioinformatics	Sapelo
exabayes	1.2.1	Bioinformatics	Zcluster
ExaML	3.0.11	Bioinformatics	Sapelo
ExaML	315576	Bioinformatics	Zcluster
exonerate	2.2.0	Bioinformatics	Sapelo
Exonerate	2.4.0	Bioinformatics	Sapelo2
exonerate	2.2.0	Bioinformatics	Zcluster
Expander	7.11	Bioinformatics	Sapelo
express	1.5.1	Bioinformatics	Zcluster
FALCON	0.4.0	Bioinformatics	Sapelo
FALCON	02282018_unzip	Bioinformatics	Sapelo2
FALCON	0.4.0	Bioinformatics	Zcluster
FAR	2.15	Bioinformatics	Zcluster
FASTA	36	Bioinformatics	Zcluster
FASTA	36.3.5e	Bioinformatics	Sapelo2
fasta format cleaner	1.0	Bioinformatics	Zcluster
FastME	2.1.5	Bioinformatics	Sapelo
FastME	2.1.5	Bioinformatics	Sapelo2
fastphase	1.4.0	Bioinformatics	Sapelo
fastphase	1.4.0	Bioinformatics	Zcluster
FastPlast	1.2.6	Bioinformatics	Sapelo
FastQC	0.11.4	Bioinformatics	Sapelo
FastQC	0.11.5	Bioinformatics	Sapelo2
FastQC	0.11.4	Bioinformatics	Zcluster
FASTQSim	3.0	Bioinformatics	Sapelo
fastStructure	1.0	Bioinformatics	Sapelo
FastSTRUCTURE	1.0	Bioinformatics	Sapelo2
fastStructure	1.0	Bioinformatics	Zcluster
FastTree	2.1.8	Bioinformatics	Zcluster
FastTree	2.1.10	Bioinformatics	Sapelo2
FastX	0.0.13.2, 0.0.14	Bioinformatics	Sapelo
FastX	0.0.13.2, 0.0.14	Bioinformatics	Zcluster
FastUniq	1.1	Bioinformatics	Zcluster
FCP	1.0.4	Bioinformatics	Zcluster
fc_squared	20160404	Chemistry	Zcluster
FFmpeg	2.8.2	Other	Sapelo
FFmpeg	0.10.2	Other	Zcluster
FFTbor	11.21.2014	Bioinformatics	Zcluster
FFTW	2.1.5, 3.3.4	Math Library	Sapelo
FFTW	2.1.5, 3.3.0, 3.3.3	Math Library	Zcluster
Fiji	2015/12/09	Bioinformatics	Zcluster
Find_Cns	2016/07/21	Bioinformatics	Sapelo
fineRADstructure	2016/12/09	Bioinformatics	Sapelo
FineSTRUCTURE	2.0.7	Bioinformatics	Sapelo
FIRE	1.1	Bioinformatics	Zcluster
FitModel	20140407	Bioinformatics	Zcluster
FLASH	1.2.11	Bioinformatics	Sapelo
FLASH	1.2.11	Bioinformatics	Sapelo2
FLASH	1.2.11	Bioinformatics	Zcluster
Flexbar	2.4	Bioinformatics	Zcluster
FragStats	2.0	Other	Zcluster
Freebayes	1.0.1	Bioinformatics	Sapelo
Freebayes	1.2.0	Bioinformatics	Sapelo2
Freebayes	1.0.0	Bioinformatics	Zcluster
FreeSurfer	6.0.0	Medical-Informatics	Sapelo
F-Seq	1.84	Bioinformatics	Zcluster
Fsl	5.0.4	Bioinformatics	Zcluster
gam-ngs	1.1b	Bioinformatics	Sapelo
gam-ngs	10/8/2013	Bioinformatics	Zcluster
GAMESS	5Dec2014	Chemistry	Sapelo
GAMESS	14Feb2018	Chemistry	Sapelo2
GAMESS	May2012R1 with XMVB 2.0, May2013R1, 5Dec2014	Chemistry	Zcluster
GAP	4.8.7	Other, Programming	Sapelo
GapFiller	2.1.1	Bioinformatics	Sapelo
GapFiller	1.11	Bioinformatics	Zcluster
garli	2.01	Bioinformatics	Zcluster
gat	1.2	Bioinformatics	Sapelo
gatk	3.6	Bioinformatics	Sapelo
GATK	3.8.0, 4.0.3.0	Bioinformatics	Sapelo2
gatk	3.6	Bioinformatics	Zcluster
gatk_lite	2.3.9	Bioinformatics	Sapelo
GAUSSIAN	09	Chemistry	Sapelo
GAUSSIAN09	09	Chemistry	Zcluster
GaussView	5	Chemistry	Sapelo
GaussView	5	Chemistry	Zcluster
GAWN	0.3.2	Bioinformatics	Sapelo
Gblocks	0.91b	Bioinformatics	Sapelo
Gblocks	0.91b	Bioinformatics	Zcluster
GBSX	1.1.4	Bioinformatics	Zcluster
GCTA	1.26.0	Bioinformatics	Sapelo
GCTA	1.26.0	Bioinformatics	Sapelo2
gdal	2.1.0	Library	Sapelo
gdal	1.9.2	Library	Zcluster
GDB	7.0.1	Debugger	Zcluster
GDC-client	1.0.1	Bioinformatics	Sapelo
GDC-client	1.0.1	Bioinformatics	Zcluster
gd	2.2.4	Bioinformatics	Sapelo
GEM	2.5	Bioinformatics	Sapelo
GEM	2.5	Bioinformatics	Zcluster
GEMMA	0.95alpha	Bioinformatics	Zcluster
Gemini	0.20.0	Bioinformatics	Sapelo
GeneMark	4.21	Bioinformatics	Zcluster
GeneMark-ES	4.33	Bioinformatics	Sapelo
Gengetopt	2.22	Other	Sapelo
GenomeTools	1.5.9	Bioinformatics	Sapelo
Genome	Phred version: 0.071220.c	Bioinformatics	Zcluster
GenomeMapper	0.4.4 (Version for SHORE/WMD3)	Bioinformatics	Zcluster
GenomeTools	1.5.9	Bioinformatics	Sapelo
GenomeTools	1.5.1	Bioinformatics	Zcluster
GenomicConsensus	3.0.2	Bioinformatics	Sapelo
gensim	2.3.0	Library	Sapelo
geos	3.5.0	Library	Sapelo
geos	3.3.3, 3.4.2	Library	Zcluster
Gerud3	12202017	Bioinformatics	Sapelo
gff3ToGenePred	1.0	Bioinformatics	Sapelo
gffcompare	0.10.4	Bioinformatics	Sapelo
Gimmemotifs	0.10.0b4	Bioinformatics	Zcluster
Gingr	1.0	Other	Zcluster
git	1.7.1, 2.7.0	Other	Sapelo
git	1.7.6, 1.7.11.3, 2.0.0	Other	Zcluster
GKIN	1.1	Bioinformatics	Sapelo
GKIN	1.1	Bioinformatics	Zcluster
Glimmer	3.0.2	Bioinformatics	Zcluster
GlimmerHMM	3.0.1	Bioinformatics	Zcluster
gmap-gsnap	2017-01-14	Bioinformatics	Sapelo
GMAP-GSNAP	2016-11-07	Bioinformatics	Sapelo2
gmap-gsnap	2014-12-14	Bioinformatics	Zcluster
GMA	0.1.5	Bioinformatics	Sapelo
GMATA	2017-01-14	Bioinformatics	Sapelo
GMP	4.3.1, 6.0.0	Library	Sapelo
GMPFRXX	20081116	Library	Sapelo
GNU Compilers	4.4.7, 4.7.4, 5.3.0	Compiler	Sapelo
GNU Compilers	4.1.2, 4.4.7, 4.5.3, 4.7.1, 5.3.0	Compiler	Zcluster
GNUMAP	3.0.2	Bioinformatics	Zcluster
gnuplot	4.2.6	Bioinformatics	Sapelo
gnuplot	5.0.5	Bioinformatics	Sapelo2
gnuplot	4.0, 4.6.0	Graphics	Zcluster
google-cloud	0.32.0	Other	Sapelo
gprof	2.17	Profiler	Zcluster
gpu-blast	1.1 with ncbi-blast-2.2.25+	Bioinformatics	Zcluster
grace	5.1.25	Graphics	Sapelo
grace	5.1.22	Graphics	Zcluster
GrADS	2.1a3	Other	Sapelo
GraftM	0.10.1	Bioinformatics	Sapelo
GraPhlAn	0.9.7	Graphics	Zcluster
Graphviz	2.40.1	Other	Sapelo
Gromacs	5.0.2, 5.1.3	Chemistry	Sapelo
Gromacs	4.5.5, 4.6.1	Chemistry	Zcluster
GSL	1.16	Math Library	Sapelo
GSL	1.9, 1.15, 1.16	Math Library	Zcluster
gss		Bioinformatics	Zcluster
h5py	2.6.0	Other	Sapelo
hapcut2	20170126	Bioinformatics	Sapelo
Haplomerger2	20151124	Bioinformatics	Zcluster
Haploview	4.2	Bioinformatics	Sapelo
Hapmix	2	Bioinformatics	Zcluster
harp	130306_105556	Bioinformatics	Sapelo
HARP	130306_105556	Bioinformatics	Zcluster
HDF5	1.8.6, 1.8.14	Library	Sapelo
HDF5	1.6.4, 1.8.9	Library	Zcluster
HGTFinder	20170929	Bioinformatics	Sapelo
HH-suite	3.0	Bioinformatics	Sapelo
HH-Suite	2.0.16	Library	Zcluster
hic-pro	2.8.0	Bioinformatics	Sapelo
HiCUP	0.5.9	Bioinformatics	Sapelo
HINGE	032717	Bioinformatics	Sapelo
HipMer	0.9.4	Bioinformatics	Sapelo
HISAT2	2.1.0	Bioinformatics	Sapelo
HISAT2	2.1.0	Bioinformatics	Sapelo2
Hmmer	3.1b2	Bioinformatics	Sapelo
HMMER	3.1b2	Bioinformatics	Sapelo2
Hmmer	3.1b1	Bioinformatics	Zcluster
Homer	4.8	Bioinformatics	Sapelo
Homer	4.8	Bioinformatics	Zcluster
hotspot	5	Bioinformatics	Zcluster
HpcGridRunner	1.0.2	Tools	Sapelo
htseq	0.6.1p1	Bioinformatics	Sapelo
HTSeq	0.9.1	Bioinformatics	Sapelo2
htseq	0.5.3p3, 0.6.1p1	Bioinformatics	Zcluster
HUMAnN2	0.6.1	Bioinformatics	Sapelo
HyDe	1.0	Bioinformatics	Sapelo
HyPhy	2.3.5	Bioinformatics	Sapelo
HyPhy	2.2.1	Bioinformatics	Zcluster
IDBA	1.1.2	Bioinformatics	Sapelo
IDBA-UD	1.1.1	Bioinformatics	Zcluster
igb	6.7.3	Bioinformatics	Zcluster
igraph	0.7.1	Bioinformatics	Zcluster
IGV	2.3.81	Bioinformatics	Sapelo
IGV	2.4.4	Bioinformatics	Sapelo2
IGV	2.1.23	Bioinformatics	Zcluster
IGVTools	2.3.81	Bioinformatics	Sapelo
IGVTools	2.3.98	Bioinformatics	Sapelo2
IGVTools	2.3.14	Bioinformatics	Zcluster
illumiprocessor	2.0.7	Bioinformatics	Sapelo
IMa2	8.27.12	Bioinformatics	Zcluster
indel-Seq-Gen	2.02	Bioinformatics	Zcluster
Infernal	1.1.1	Bioinformatics	Zcluster
InStruct	3.2.09	Bioinformatics	Zcluster
Intel Compilers	14.0.0, 15.0.2	Compiler	Sapelo
Intel Compilers	2013 SP1	Compiler	Zcluster
iprscan (InterProScan)	5.16-55.0	Bioinformatics	Sapelo
iprscan (InterProScan)	5.9-50.0	Bioinformatics	Zcluster
ipyrad	0.3.7, 0.5.15, 0.7.3	Bioinformatics	Sapelo
IQ-Tree	1.5.5, 1.6.1	Bioinformatics	Sapelo
IQ-Tree	1.5.3	Bioinformatics	Zcluster
iRep	1.10	Bioinformatics	Sapelo
iRODS	4.2.0	Other	Zcluster
iscan	1.0.0	Bioinformatics	Zcluster
I-TASSER	5.0	Bioinformatics	Sapelo
IsoSeq_SA3nUP	09272017	Bioinformatics	Sapelo
ITK	3.20.1	Other	Zcluster
iva	1.0.3	Bioinformatics	Sapelo
iva	1.0.3	Bioinformatics	Zcluster
JAGS	3.4.0, 4.1.0, 4.2.0	Statistics	Sapelo
JAGS	3.3.0, 4.1.0	Statistics	Zcluster
JasPer	1.900.1	Other	Sapelo
JasPer	1.900.1	Other	Zcluster
Java	6, 7, 8	Programming	Sapelo
Java	6, 7, 8	Programming	Zcluster
Jellyfish	2.2.3	Bioinformatics	Sapelo
Jellyfish	2.2.6	Bioinformatics	Sapelo2
Jellyfish	2.1.1	Bioinformatics	Zcluster
JModelTest	2.1.4	Bioinformatics	Zcluster
Julia	0.3.0-beta, 0.3.3	Programming	Zcluster
Jupyter Notebook	2.5.0	Programming	Sapelo
Jupyter Notebook	2.5.0	Programming	Zcluster
k-link	03 27, 2009	Bioinformatics	Zcluster
Kaiju	1.6.2	Bioinformatics	Sapelo2
kallisto	0.42.5	Bioinformatics	Zcluster
kallisto	0.42.5	Bioinformatics	Sapelo
kallisto	0.43.1	Bioinformatics	Sapelo2
KAT	2.3.4	Bioinformatics	Sapelo
Kat	1.0.6	Bioinformatics	Zcluster
KentUtils	302.1.0	Bioinformatics	Sapelo
keras	1.0.8, 2.0.4	Other	Sapelo
keras	1.0.8	Other	zcluster
KisSplice	2.2.1	Bioinformatics	Zcluster
Kraken	0.10.5-beta	Bioinformatics	Sapelo
Kraken	0.10.5-beta	Bioinformatics	Zcluster
KmerGenie	1.7016	Bioinformatics	Sapelo
KmerGenie	1.5393	Bioinformatics	Zcluster
Lagrange	20130526	Bioinformatics	Zcluster
LAMMPS	16Aug13, 5Sep14, 10Aug15, 7Dec15, 16Feb16, 30Jul16, 17Nov16	Chemistry	Sapelo
LAMMPS	23Sep13, 5Sep14, 10Aug15	Chemistry	Zcluster
LAPACK	3.0, 3.4.2	Math Library	Zcluster
LAST	719	Bioinformatics	Sapelo
LASTZ	1.02.00, 1.03.73	Bioinformatics	Sapelo
LASTZ	1.03.02	Bioinformatics	Zcluster
LCS	1.0	Bioinformatics	Zcluster
LDDist	1.3.2	Bioinformatics	Zcluster
LDhat	2.2	Bioinformatics	Sapelo
LDhelmet	1.7	Bioinformatics	Sapelo
LDhot	0.4	Bioinformatics	Sapelo
LEfSe	20160621	Bioinformatics	Sapelo
LEfSe	20160621	Bioinformatics	zcluster
Lep-Map2	0.2	Bioinformatics	Zcluster
libradtran	1.7, 2.0.1	Other	Sapelo
librosa	0.4.3	Other	Sapelo
libsequence	1.7.4	Bioinformatics	Zcluster
LIBSVM	3.21	Other	Sapelo
LIBSVM	3.17	Other	Zcluster
Lighter	06192015	Bioinformatics	Zcluster
LLVM-Clang	3.1	Compiler	Zcluster
lmod	5.8	Other	Sapelo
LocARNA	1.9.2	Bioinformatics	Sapelo
LoFreq	2.1.2	Bioinformatics	Sapelo
LoFreq	2.1.2	Bioinformatics	Zcluster
lsa	11182011	Bioinformatics	Zcluster
LTR_retriever	20170907	Bioinformatics	Sapelo
LUMPY	0.2.13	Bioinformatics	Sapelo
LUMPY	0.2.13	Bioinformatics	Sapelo2
LZO	2.1.0	Bioinformatics	Sapelo
MACS2	2.1.1	Bioinformatics	Sapelo
macs	1.4.2	Bioinformatics	Zcluster
macs2	2.1.0.20140616	Bioinformatics	Zcluster
MaCS-simulator	0.5d	Bioinformatics	Sapelo
Mafft	7.273-e	Bioinformatics	Sapelo
MAFFT	7.273, 7.313	Bioinformatics	Sapelo2
Mafft	7.029-e	Bioinformatics	Zcluster
mageck-vispr	02242017	Bioinformatics	Sapelo
mageck	0.5	Bioinformatics	Sapelo
Magma	2.22-9	Other	Sapelo
Magma	2.21-3	Other	Zcluster
Mahotas	1.4.3	Bioinformatics	Sapelo
Maker	2.31.9	Bioinformatics	Sapelo2
maker	2.31.7	Bioinformatics	Zcluster
Make	4.2	Programming	Sapelo
Maple	16	Other, Programming, Graphics	Zcluster
MapSplice2	2.1.7	Bioinformatics	Zcluster
MAQ	0.7.1	Bioinformatics	Zcluster
MARDIGRAS	3.21	Chemistry	Zcluster
MaSuRCA	3.1.3	Bioinformatics	Sapelo
MaSuRCA	2.3.0	Bioinformatics	Zcluster
MATS	3.0.9	Bioinformatics	Zcluster
Mathematica	9.0 (currently not available)	Other, Programming , Graphics	Zcluster
Matlab	R2015aSP1, R2015b, R2016b	Other, Programming, Graphics	Sapelo
MatLab	R2012a (7.14), R2013a (8.1)	Other, Programming, Graphics	Zcluster
Mauve	2.4.0	Bioinformatics	Sapelo
Mauve	snapshot_2015-02-13	Bioinformatics	Zcluster
MAVEN-genome	682, 769, 774	Bioinformatics	Zcluster
MaxBin	2.1.1	Bioinformatics	Sapelo
MCScanX	0.8	Bioinformatics	Sapelo
MCScanX-transposed	0.8	Bioinformatics	Sapelo
MCScanX	10/18/2013	Bioinformatics	Zcluster
MCL	14.137	Bioinformatics	Sapelo2
MCL	12-135	Bioinformatics	Zcluster
MDEnergy	2.3	Chemistry	Sapelo
MEAD	2.2.9	Chemistry	Zcluster
MEGA	7.0.18	Bioinformatics	Zcluster
Megahit	1.1.1	Bioinformatics	Sapelo
Megahit	1.0.2	Bioinformatics	Zcluster
MeGAMerge	1.0	Bioinformatics	Zcluster
MEGAN	6.4.3	Bioinformatics	Sapelo
megan	5.5.3	Bioinformatics	Zcluster
MEME	4.10.2, 4.11.0	Bioinformatics	Sapelo
MEME	4.10.0	Bioinformatics	Zcluster
MEMo	1.1	Bioinformatics	Zcluster
Meraculous	2.0	Bioinformatics	Sapelo
Meraculous	2.2.5	Bioinformatics	Sapelo2
Mercurial	3.9	Other	Sapelo
MetaBAT	20151110	Bioinformatics	Sapelo
Metal	20110325	Bioinformatics	Sapelo
MetaMOS	v1.5rc1	Bioinformatics	Zcluster
Metaphlan2	2.0	Bioinformatics	Sapelo
Metaphlan2	2.0	Bioinformatics	Zcluster
metaseq	0.5.6	Bioinformatics	Zcluster
metaSort	1.3	Bioinformatics	Sapelo
Metavelvet	1.2.02	Bioinformatics	Sapelo
Metavelvet	1.2.02	Bioinformatics	Zcluster
MetavelvetSL	1.0	Bioinformatics	Sapelo
metaxa2	2.1.3	Bioinformatics	Zcluster
MethPipeline	0.1_120115	Bioinformatics	Sapelo
methylpy	08/25/2016	Bioinformatics	Sapelo
METIS	4.0.3, 5.1.0	Math Library	Zcluster
MGA	1.5.4	Bioinformatics	Zcluster
MHAP	2.1.1	Bioinformatics	Sapelo
Migrate	3.6.11	Bioinformatics	Sapelo
Migrate	3.5.1	Bioinformatics	Zcluster
Minia	1.4683	Bioinformatics	Zcluster
Minimac3	2.0.1	Bioinformatics	Sapelo
Minimap	0.2	Bioinformatics	Sapelo
MIRA	3.9.9	Bioinformatics	Zcluster
MIRA	3.9.9	Bioinformatics	Zcluster
miRanda	aug2010	Bioinformatics	Sapelo
mirdeep-p	1.3	Bioinformatics	Sapelo
miRDeep2	0.0.9	Bioinformatics	Sapelo
MISO	09132016	Bioinformatics	Zcluster
MISO	09132016	Bioinformatics	Zcluster
MITE-Hunter	11-2011	Bioinformatics	Zcluster
MixMapper	2.0	Bioinformatics	Zcluster
MKL	11.1, 11.2	Math Library	Sapelo
MKL	11.0	Math Library	Zcluster
mlehot	1.8.16	Bioinformatics	Sapelo
MOABS	1.3.2	Bioinformatics	Sapelo
MOABS	1.2.9	Bioinformatics	Zcluster
MOCAT	1.3r2	Bioinformatics	Sapelo
Modeller	9.16	Bioinformatics	Zcluster
MONO	3.0.3	Other, Programming	Zcluster
MOSAIK	2.2.24	Bioinformatics	Zcluster
MOTECC qmdcp	90	Chemistry	Zcluster
MOTHUR	1.37.5, 1.39.5	Bioinformatics	Sapelo
Mothur	1.39.5	Bioinformatics	Sapelo2
MOTHUR	1.37.1	Bioinformatics	Zcluster
MP-EST	1.5	Bioinformatics	Sapelo
MP-EST	1.2	Bioinformatics	Zcluster
mpeg2vidcodec	12	Category:Other	Zcluster
MPFR	3.1.2	Library	Sapelo
MPFRC++	3.6.2	Library	Sapelo
mpi4py	1.3	Programming	Zcluster
mpiblast	1.6.0	Bioinformatics	Zcluster
Mplus	7.4	Statistics	Sapelo
MrBayes	3.2.6	Bioinformatics	Sapelo
MrBayes	3.2.5	Bioinformatics	Zcluster
MrDemuxy	1.2.0	Bioinformatics	Sapelo
mrfast	2.5.0.4	Bioinformatics	Zcluster
MSA	3.8.1b	Bioinformatics	Zcluster
MSG	0.4.3	Bioinformatics	Zcluster
MSTmap	20170927	Bioinformatics	Sapelo
MSTMap	20160408	Bioinformatics	Zcluster
MultiLoc2	26-10-2009	Bioinformatics	Sapelo
MultiLoc2	26-10-2009	Bioinformatics	Zcluster
MultiMappingCounter	21-09-2017	Bioinformatics	Sapelo
MultiSplice	0.10	Bioinformatics	Zcluster
MUMmer	3.23	Bioinformatics	Sapelo
MUMmer	3.23	Bioinformatics	Sapelo2
MUMmer	3.22	Bioinformatics	Zcluster
MUMPS	4.10.0	Math Library	Zcluster
MUSCLE	3.8.31	Bioinformatics	Sapelo
MUSCLE	3.8	Bioinformatics	Sapelo2
MUSCLE	3.8.31	Bioinformatics	Zcluster
MVFtools	10112017	Bioinformatics	Sapelo
MyScanACE	04232012	Bioinformatics	Zcluster
MuTect	1.1.5	Bioinformatics	Sapelo
MuTect	1.1.5	Bioinformatics	Zcluster
NAMD	2.11	Chemistry	Sapelo
NAMD	2.12	Chemistry	Sapelo2
NAMD	2.9	Chemistry	Zcluster
NCBI Blast	2.2.26	Bioinformatics	Sapelo
NCBI Blast	2.2.26	Bioinformatics	Zcluster
NCBI Blast +	2.2.29	Bioinformatics	Sapelo
NCBI Blast +	2.2.29	Bioinformatics	Zcluster
ncbi blast parsers	1.0	Bioinformatics	Zcluster
ncbi_toolkit	12.0.0	Bioinformatics	Zcluster
Ncbi_tools++	12.0.0	Bioinformatics	Sapelo
NCBIBLAST+	2.7.1	Bioinformatics	Sapelo
NETCDF	3.6.3, 4.1.3, 4.3.2	Library	Sapelo
NETCDF	3.6.3, 4.1.3	Library	Zcluster
netCDF4-python	1.0.5	Library	Zcluster
netlogo	5.0	Other	Zcluster
Newbler	2.6	Bioinformatics	Sapelo
Newbler	2.6	Bioinformatics	Zcluster
Newick-utils	1.6	Bioinformatics	Zcluster
ngopt	20140604	Bioinformatics	Zcluster
ngsplot	2.6.1	Bioinformatics	Zcluster
NGS-QC Toolkit	2.3.3	Bioinformatics	Sapelo
NGS QC Toolkit	2.3.3	Bioinformatics	Zcluster
Ngsutils	0.5.9	Bioinformatics	Sapelo
Ngsutils	0.5.0c	Bioinformatics	Zcluster
NH PhyloBayes	0.2.3	Bioinformatics	Zcluster
nhPhyML	01/2012	Bioinformatics	Zcluster
NovelSeq	1.0.2	Bioinformatics	Zcluster
NovoAlign	2.07.18	Bioinformatics	Zcluster
NPUTE	v1	Bioinformatics	Zcluster
nseg	04182013	Bioinformatics	Zcluster
numexp	1.4.2	Other	Zcluster
NWCHEM	6.5	Chemistry	Sapelo
NWCHEM	6.3.2	Chemistry	Zcluster
NxTrim	v0.3.2-alpha	Bioinformatics	Sapelo
NxTrim	0.3.1-alpha	Bioinformatics	Zcluster
Oases	0.2.02, 0.2.8	Bioinformatics	Zcluster
Octave	4.0.3	Other, Programming, Graphics	Sapelo
OligoArray	2.1	Bioinformatics	Zcluster
OligoArrayAux	3.8	Bioinformatics	Zcluster
Oligotyping	2.1	Bioinformatics	Sapelo
Oligotyping	2.1	Bioinformatics	Zcluster
opal	2.0.0	Bioinformatics	Zcluster
Open Babel	2.3.1	Chemistry	Zcluster
OpenBUGS	3.2.3	Statistics	Sapelo
OpenBUGS	3.2.2	Statistics	Zcluster
OpenCL	1.0, 1.1	Programming	Zcluster
OpenCV	2.4.13.3, 3.0	Other	Sapelo
OpenCV	2.3.1, 2.4.4	Other	Zcluster
OpenSees	2015.02.26	Other	Zcluster
opera	2.0.6	Bioinformatics	Sapelo
opera	1.3.1	Bioinformatics	Zcluster
Oqtans	0.1	Bioinformatics	Zcluster
ORCA	3.0.3, 4.0.0	Chemistry	Sapelo
ORCA	3.0.3	Chemistry	Zcluster
Orthagogue	1.0.3	Bioinformatics	Zcluster
OrthoFiller	1.1.4	Bioinformatics	Sapelo
OrthoFinder	1.1.8	Bioinformatics	Sapelo
OrthoFinder	2.1.2	Bioinformatics	Sapelo2
OrthoFinder	1.0.8	Bioinformatics	Zcluster
OrthoMCL	2.0.9	Bioinformatics	Zcluster
OSPREY	2.0	Bioinformatics	Zcluster
p4	r231	Bioinformatics	Zcluster
p7zip	9.20.1	Other	Zcluster
PacBioToCA	8.2beta-binary	Bioinformatics	Zcluster
pagan	0.39	Bioinformatics	Zcluster
pagit	v1	Bioinformatics	Zcluster
Pairfq	0.14.1	Bioinformatics	Zcluster
palfinder	0.02.04	Bioinformatics	Sapelo
paml	4.8	Bioinformatics	Sapelo
PAML	4.8	Bioinformatics	Zcluster
pandas	0.16.0	Other	Sapelo
pandaseq	2.0	Bioinformatics	Zcluster
Papara_nt	2.1.2	Bioinformatics	Zcluster
ParaFly	0.1.0	utility	Sapelo
ParMETIS	3.2.0, 4.0.3	Math Library	Zcluster
Paradigm	0.1-9	Bioinformatics	Zcluster
Paradigmshift	1.0	Bioinformatics	Zcluster
Parseq	02	Bioinformatics	Zcluster
ParseRNAseq	1.0	Bioinformatics	Zcluster
PartitionFinder	2.0.0-pre11	Bioinformatics	Zcluster
PASA	2.0.2	Bioinformatics	Zcluster
PASHA	1.0.6	Bioinformatics	Zcluster
PASTA	1.6.4	Bioinformatics	Sapelo
PASTA	1.6.4	Bioinformatics	Zcluster
PatMaN	1.2.2	Bioinformatics	Zcluster
Paup	4a147	Bioinformatics	Sapelo
pbh5tools	0.8.0	Bioinformatics	Zcluster
PBSuite	15.8.24	Bioinformatics	Sapelo
PBSuite	15.2.20	Bioinformatics	Zcluster
Peakranger	1.18	Bioinformatics	Sapelo
PEAR	0.9.6	Bioinformatics	Zcluster
PEAR	0.9.10-src	Bioinformatics	Sapelo
PePr	1.1.18	Bioinformatics	Sapelo
Perl	5.24.0-thread	Programming	Sapelo
Perl	5.14.1	Programming	Zcluster
perM	0.4.0	Bioinformatics	Zcluster
PETSc	3.7.6	Math Library	Sapelo
PETSc	3.1-p8, 3.4.2	Math Library	Zcluster
Pfam_scan	04282012	Bioinformatics	Zcluster
pftools	2.3.5	Bioinformatics	Zcluster
PGDBG	12.10	Debugger	Zcluster
PGI Compilers	2014	Compiler	Sapelo
PGI Compilers	2010, 2011, 2012, 2013, 2014	Compiler	Zcluster
PGPROF	12.10	Profiler	Zcluster
PHASE	2.1.1	Bioinformatics	Sapelo
PHASE	2.1.1.linux	Bioinformatics	Zcluster
phaser	1.2.0	Bioinformatics	Sapelo
PhaseTank	1.0	Bioinformatics	Sapelo
phobius	1.01	Bioinformatics	Zcluster
phred/phrap/conced		Bioinformatics	Zcluster
Phyldog		Bioinformatics	Zcluster
Phylip	3.69	Bioinformatics	Zcluster
PhyloGenie	11082017	Bioinformatics	Sapelo
PhyML	3.0	Bioinformatics	Sapelo
PhyML	3.3.20170530	Bioinformatics	Sapelo2
PhyloBayes	3.3b	Bioinformatics	Zcluster
PhyloBayes-MPI	1.7	Bioinformatics	Sapelo
PhyloBayes-MPI	20161021	Bioinformatics	Sapelo2
PhyloBayes-MPI	1.3b, 1.4e	Bioinformatics	Zcluster
PhyloNet	3.6.0	Bioinformatics	Sapelo
PhyloNet	3.6.1	Bioinformatics	Zcluster
phyluce	1.5.0	Bioinformatics	Sapelo
PhyML	3.0	Bioinformatics	Sapelo
PHYML	20110919	Bioinformatics	Zcluster
picard	2.1.1, 2.4.1	Bioinformatics	Sapelo
picard	2.16.0	Bioinformatics	Sapelo2
picard	1.137	Bioinformatics	Zcluster
picrust	1.1.0	Bioinformatics	Sapelo
picrust	1.0.0	Bioinformatics	Zcluster
pigz	2.3.4	Other	Sapelo
pileup	0.6	Bioinformatics	Zcluster
Pilon	1.21	Bioinformatics	Sapelo
Pindel	0.2.5b8	Bioinformatics	Sapelo
pindel	0.2.4t	Bioinformatics	Zcluster
pIRS	2.0.2	Bioinformatics	Sapelo
Pitchfork	09272017	Bioinformatics	Sapelo
pknotsRG	1.3	Bioinformatics	Zcluster
platanus	1.2.1	Bioinformatics	Zcluster
platypus	0.8.1	Bioinformatics	Sapelo
PLEK	1.2	Bioinformatics	Sapelo
plink	1.07, 1.9-beta3	Bioinformatics	Sapelo
PLINK	1.07, 1.9b	Bioinformatics	Sapelo2
plink	1.07, 1.9beta3	Bioinformatics	Zcluster
PLUMED	2.3.3	Chemistry	Sapelo
popbam	0.3	Bioinformatics	Zcluster
poretools	0.6.0	Bioinformatics	Sapelo
portaudio	19	Other	Sapelo
prank	100802	Bioinformatics	Zcluster
PRATT	2.1	Bioinformatics	Sapelo
prep-chem-src	1.5	Other	Sapelo
Primer3	2.0.0-alpha	Bioinformatics	Sapelo
Primer3	2.3.7	Bioinformatics	Sapelo2
Primer3	2.3.4	Bioinformatics	Zcluster
PRINSEQ	0.20.4	Bioinformatics	Sapelo
PRINSEQ	0.20.3	Bioinformatics	Zcluster
ProbABEL	0.5.0	Bioinformatics	Sapelo
Prodigal	2.6.3	Bioinformatics	Sapelo
proovread	2.12	Bioinformatics	Sapelo
proovread	2.12	Bioinformatics	Zcluster
Prokka	1.11	Bioinformatics	Sapelo
Prokka	1.11	Bioinformatics	Zcluster
protobuf	2.4.1, 2.6.1, 3.0.0-beta1	Other	Sapelo
protobuf	2.6.1	Other	Zcluster
Prottest3	3.4.2	Bioinformatics	Sapelo
Prottest3	3.2.1	Bioinformatics	Zcluster
psmc	0.6.4-r33	Bioinformatics	Zcluster
ptRNApred	1.0	Bioinformatics	Zcluster
PuMA	0.904	Bioinformatics	Zcluster
pybedtools	09/22/2016	Bioinformatics	Sapelo
pyDNase	0.2.5	Bioinformatics	Sapelo
pydub	0.21.0	Other	Sapelo
pyfasta	0.5.2	Bioinformatics	Sapelo
pyfasta	0.5.2	Other, Programming	Zcluster
pydev	3.3.3	Other, Programming	Zcluster
pyDNase	0.2.3	Bioinformatics	Zcluster
pymol	1.8.2	Other, Graphics	Zcluster
pynast	1.2	Bioinformatics	Zcluster
PyNIO	1.4.1	Other	Zcluster
PyPy	2.7-5.10.0	Programming	Sapelo
pyRAD	3.0.64	Bioinformatics	Sapelo
pyRAD	3.0.61	Bioinformatics	Zcluster
pysam	0.8.1	Bioinformatics	Zcluster
PyTables	2.3.1	Bioinformatics	Zcluster
Pythonlzo	1.11	Bioinformatics	Sapelo
Python	2.6.6, 2.7.8, 2.7.13, 3.4.3, 3.5.1	Programming	Sapelo
Python	2.4.3, 2.7.2, 2.7.8, 3.3.0. 3.4.0	Programming	Zcluster
PyTorch	0.1.9, 0.1.11	Other	Sapelo
Qiime	1.9.1	Bioinformatics	Sapelo
Qiime	1.7.0	Bioinformatics	Zcluster
qeseq	0.2.2	Bioinformatics	Zcluster
QT	4.8.5	Other	Zcluster
QTL Cartographer	1.17j	Bioinformatics	Zcluster
Quake	0.3	Bioinformatics	Sapelo
quake	0.3.4	Bioinformatics	Zcluster
Qualimap2	2.2.1	Bioinformatics	Sapelo
QUAST	4.5	Bioinformatics	Sapelo
quast	3.1, 4.3	Bioinformatics	Zcluster
Quantum Espresso	5.4.0	Chemistry	Sapelo
Quantum Espresso	6.2.0	Chemistry	Sapelo2
Quantum Espresso	4.3.2, 5.0.2	Chemistry	Zcluster
R	3.1.2, 3.2.1, 3.2.3, 3.3.1	Statistics	Sapelo
R	2.14.0, 2.15.0, 2.15.2, 3.0.0, 3.0.2, 3.0.3, 3.1.0, 3.1.1, 3.2.0, 3.2.3, 3.3.0, 3.3.2	Statistics	Zcluster
RACA	0.9.1.1	Bioinformatics	Zcluster
racon	20161214	Bioinformatics	Sapelo
racon	20180406	Bioinformatics	Sapelo2
radcap	1.0.0	Bioinformatics	Zcluster
RADnome	0.0.1-7-25	Bioinformatics	Zcluster
Randfold	2.0.1	Bioinformatics	Sapelo
RANDFOLD	2.0	Bioinformatics	Zcluster
RAPSearch2	2.23	Bioinformatics	Sapelo
RAPSearch2	2.17	Bioinformatics	Zcluster
RATT	10052017	Bioinformatics	Sapelo
RATT	1.0	Bioinformatics	Zcluster
RAxML	8.2.4	Bioinformatics	Sapelo
RAxML	8.2.4	Bioinformatics	Zcluster
RAxML-Light	1.0.5	Bioinformatics	Zcluster
Ray	2.3.1	Bioinformatics	Sapelo
RCCBatchBlast	5.0	Bioinformatics	Zcluster
RCCBatchBlastPlus	1.0	Bioinformatics	Zcluster
RDPTools	2.2.0	Bioinformatics	Sapelo
READemption	0.3.7	Bioinformatics	Sapelo
RED	1.0	Bioinformatics	Sapelo
REAPR	1.0.18	Bioinformatics	Sapelo
REAPR	1.0.16	Bioinformatics	Zcluster
RECON	1.08	Bioinformatics	Zcluster
REPCLASS	1.0.1	Bioinformatics	Sapelo
repdenovo	02232017	Bioinformatics	Sapelo
RepeatExplorer	02/2015	Bioinformatics	Sapelo
RepeatExplorer	02/2015	Bioinformatics	Zcluster
RepeatExplorer-TAREAN	12/13/2016, 01/10/2017	Bioinformatics	Sapelo
Repeatmasker	4.0.5	Bioinformatics	Sapelo
Repeatmasker	4.0.5	Bioinformatics	Zcluster
Repeatmodeler	1.0.8	Bioinformatics	Sapelo
Repeatmodeler	1.0.8	Bioinformatics	Zcluster
Reptile	1.1	Bioinformatics	Zcluster
RepeatScout	1.05	Bioinformatics	Zcluster
RES-Scanner	20170726	Bioinformatics	Sapelo
Revbayes	1.0.5	Bioinformatics	Sapelo
RGT	0.11.2	Bioinformatics	Sapelo
riboPicker	0.4.3	Bioinformatics	Zcluster
RIP	4	Other	Zcluster
RITA	1.0.1	Bioinformatics	Zcluster
RMBlast	2.2.27	Bioinformatics	Zcluster
Rmpi	0.6-6	Programming	Sapelo
Rmpi	0.5-9, 0.6-1, 0.6-3, 0.6-5, 0.6-6	Programming	Zcluster
RNA-SeQC	1.1.8	Bioinformatics	Zcluster
RNAmmer	1.2	Bioinformatics	Sapelo
RNAmmer	1.2	Bioinformatics	Zcluster
RNAple	0.2	Bioinformatics	Sapelo
RNAprof	2.0	Bioinformatics	Zcluster
rnaQUAST	0.3.0	Bioinformatics	Zcluster
RNAshapes	2.1.6	Bioinformatics	Zcluster
RNAz	2.1	Bioinformatics	Zcluster
rnnotator	2.4.12	Bioinformatics	Zcluster
Roary	3.8	Bioinformatics	Sapelo
Roche	2.6	Bioinformatics	Zcluster
Rockhopper	2.0.2	Bioinformatics	Zcluster
RogueNaRok	1.0	Bioinformatics	Zcluster
Roms_tools	3.1.1	Other	Sapelo
Rosetta	2016.15.58628, 2017.26.59567	Chemistry	Sapelo
ROOT	5.34.09	Library	Zcluster
rpy	1.0.3	Other	Zcluster
rpy2	2.4.3	Other	Zcluster
RSAT (RSA-tools)	1.0	Bioinformatics	Zcluster
RSEM	1.2.20	Bioinformatics	Sapelo
RSEM	1.3.0	Bioinformatics	Zcluster
RSEG	0.4.8NC	Bioinformatics	Zcluster
RSeQC	2.6.4	Bioinformatics	Sapelo
RSeQC	2.6.3	Bioinformatics	Zcluster
rspr	1.2.2	Other	Zcluster
Ruby	2.4.2	Programming	Sapelo
RUM	1.11	Bioinformatics	Zcluster
Sabre	02/03/2017	Other	Sapelo
Sage	7.4, 8.0	Other	Sapelo
Sage	6.3	Other	Zcluster
sailfish	0.6.3	Bioinformatics	Zcluster
Salmon	0.6.1-pre	Bioinformatics	Sapelo
sam2pairwise	1.0.0	Bioinformatics	Sapelo
sambamba	0.4.7	Bioinformatics	Zcluster
samblaster	0.1.15	Bioinformatics	Zcluster
samtools	1.3.1 1.6	Bioinformatics	Sapelo
SAMtools	0.1.19, 1.3.1, 1.6	Bioinformatics	Sapelo2
samtools	1.2	Bioinformatics	Zcluster
SATé	2.2.7	Bioinformatics	Sapelo
SATé	2.2.7	Bioinformatics	Zcluster
sbt	0.13.12, 1.0.2	Other, Programming	Sapelo
sbt	0.13.9	Other, Programming	Zcluster
scala	2.10.6, 2.11.7, 2.12.0-RC1, 2.12.1	Other, Programming	Sapelo
scala	2.11.7, 2.12.0-M3	Other, Programming	Zcluster
ScaLAPACK	2.0.2	Math Library	Sapelo
ScaLAPACK	2.0.2	Math Library	Zcluster
scalpel	0.5.3	Bioinformatics	Sapelo
Scripture	3/20/2015	Bioinformatics	Sapelo
Scripture	3/20/2015	Bioinformatics	Zcluster
SEAStAR	0.4.8	Bioinformatics	Zcluster
segemehl	0.1.9	Bioinformatics	Zcluster
Seq-Gen	1.3.3	Bioinformatics	Sapelo
seqMINER	1.3.3e	Bioinformatics	Zcluster
seqtk	1.0-r63-dirty	Bioinformatics	Sapelo
seqtk	1.0-r63-dirty	Bioinformatics	Zcluster
SEQuel	1.0.2	Bioinformatics	Zcluster
SGA	0.10.15	Bioinformatics	Sapelo
shapeit	v2.r837	Bioinformatics	Sapelo
SHE-RA	012012	Bioinformatics	Zcluster
SHORE	0.9.3	Bioinformatics	Sapelo
SHORE	0.9.3	Bioinformatics	Zcluster
SHOREmap	2.0, 3.0	Bioinformatics	Zcluster
ShortStack	3.8.5	Bioinformatics	Sapelo
sicer	1.1	Bioinformatics	Sapelo
sicer	1.1	Bioinformatics	Zcluster
sickle	1.33	Bioinformatics	Sapelo
sickle	1.33	Bioinformatics	Zcluster
SigHunt	1.0	Bioinformatics	Zcluster
SignalIP	4.1c	Bioinformatics	Zcluster
SInC-simulator	2017.06.06	Bioinformatics	Sapelo
SINE_Scan	1.1.1	Bioinformatics	Sapelo
SISRS	1.0	Bioinformatics	Zcluster
SiZer	07022012	Bioinformatics	Zcluster
slclust	04282012	Bioinformatics	Zcluster
slda	0.1.4	Other	Sapelo
smoke	4.5	Other	Sapelo2
SMRT-Analysis	2.3.0	Bioinformatics	Zcluster
SMRTanalysis	3.0.2	Bioinformatics	Sapelo
SMRTLINK	5.1.0.26412	Bioinformatics	Sapelo2
snakemake	4.0.0	Bioinformatics	Sapelo
SNAP	2010-7-28	Bioinformatics	Zcluster
SNAPP	1.1.4	Bioinformatics	Zcluster
SnoReport	1.3	Bioinformatics	Zcluster
snow	0.3-8, 0.3-10, 0.3-12, 0.3-13	Statistics	Zcluster
snowhite	1.1.4	Bioinformatics	Zcluster
snpEff	4.3t	Bioinformatics	Sapelo2
snpEff	4.11	Bioinformatics	Zcluster
SNPhylo	20160204	Bioinformatics	Sapelo
SNPhylo	20140701	Bioinformatics	Zcluster
Soap2	2.21	Bioinformatics	Zcluster
SOAPaligner	2.21	Bioinformatics	Sapelo
SOAPaligner	2.21	Bioinformatics	Sapelo2
SOAPaligner	2.21	Bioinformatics	Zcluster
SOAPdenovo	1.05	Bioinformatics	Zcluster
SOAPdenovo-trans	1.01	Bioinformatics	Zcluster
SOAPdenovo2	r240	Bioinformatics	Sapelo
SOAPdenovo2	r240	Bioinformatics	Sapelo2
SOAPdenovo2	r223, r240	Bioinformatics	Zcluster
SOAPsnp	1.03	Bioinformatics	Zcluster
SomaticCall	42811	Bioinformatics	Zcluster
SOP-GPU	20180404	Bioinformatics	Sapelo2
SortMeRNA	2.1	Other	Sapelo
Spark	1.6.0, 2.0.1, 2.2.1	Other	Sapelo
spimap	1.1	Bioinformatics	Zcluster
SPAdes	3.11.1	Bioinformatics	Sapelo2
SPAdes	3.7.0, 3.8.0, 3.9.0, 3.10.0, 3.11.0	Bioinformatics	Sapelo
SPAdes	3.6.2, 3.8.0, 3.9.0, 3.10.0	Bioinformatics	Zcluster
SparseAssembler	2012/06/15	Bioinformatics	Zcluster
SpeedSeq	052317	Bioinformatics	Sapelo
Splitaake	1.0	Bioinformatics	Zcluster
spolpred	09/10/2013	Bioinformatics	Zcluster
sprai	0.9.9.10	Bioinformatics	Zcluster
sprspace	1.0	Other	Zcluster
Sputnik	03/20/2013	Bioinformatics	Zcluster
SQUID	1.1	Bioinformatics	Sapelo
SRAToolKit	2.8.2-1	Bioinformatics	Sapelo
SRA	2.8.1	Bioinformatics	Zcluster
SSAHA2	2.5.5	Bioinformatics	Zcluster
SSAKE	v3-8	Bioinformatics	Zcluster
SSPACE	2.1.1	Bioinformatics	Sapelo
SSPACE	2.0	Bioinformatics	Zcluster
ssr_pipeline	0.95	Bioinformatics	Zcluster
stacks	1.40, 1.44, 2.0beta2, 2.0beta7	Bioinformatics	Sapelo
Stacks	1.48	Bioinformatics	Sapelo2
stacks	1.35	Bioinformatics	Zcluster
STAMP	2.1.3	Bioinformatics	Sapelo
STAMPY	1.0.31	Bioinformatics	Sapelo
STAMPY	1.0.21	Bioinformatics	Zcluster
STAR	2.5.3a	Bioinformatics	Sapelo
STAR	2.4.1c	Bioinformatics	Zcluster
STEM	2.0	Bioinformatics	Zcluster
STEM-hy	1.0	Bioinformatics	Zcluster
strauto	1.0	Bioinformatics	Zcluster
StringTie	1.2.0	Bioinformatics	Sapelo
StringTie	1.3.3	Bioinformatics	Sapelo2
StringTie	1.1.2	Bioinformatics	Zcluster
structure	2.3.4	Bioinformatics	Sapelo
Structure	2.3.4	Bioinformatics	Sapelo2
structure	2.3.4	Bioinformatics	Zcluster
structurama	2.0	Bioinformatics	Zcluster
subread	1.5.2	Bioinformatics	Sapelo
subread	1.4.6	Bioinformatics	Zcluster
suma_package	1.0	Bioinformatics	Zcluster
SUNTANS	20150923	Other	Sapelo
SUNTANS	20180305	Other	Sapelo2
SUNTANS	697-trunk, 784	Other	Zcluster
SuperLU	4.3	Math Library	Zcluster
SuperLU_dist	3.3	Math Library	Zcluster
SUPPA	06122015	Bioinformatics	Sapelo
SVDetect	0.7	Bioinformatics	Sapelo
SVDetect	0.7	Bioinformatics	Sapelo2
SVDetect	0.7	Bioinformatics	Zcluster
SVDquartets	1.0	Bioinformatics	Zcluster
SVMlight	6.02	Other	Sapelo
SWIG	3.0.12	Bioinformatics	Sapelo
SWIG	3.0.2	Programming	Zcluster
T-Coffee	11.00.8cbe486	Bioinformatics	Sapelo
T-REX	1.0	Bioinformatics	Sapelo
tabix	0.2.5	Bioinformatics	Zcluster
TagCleaner	0.13	Bioinformatics	Zcluster
Tandem Repeats Finder	4.09	Bioinformatics	Sapelo
Tandem Repeats Finder	4.07b	Bioinformatics	Zcluster
TAPDANCE	03/20/2013	Bioinformatics	Zcluster
tassel	5.2.42	Bioinformatics	Sapelo
tassel	5.2.20	Bioinformatics	Zcluster
tax2tree	1.0	Bioinformatics	Zcluster
TEClass	2.1	Bioinformatics	Zcluster
TEPID	0.6	Bioinformatics	Sapelo
TEMP	1.0.4	Bioinformatics	Zcluster
tesseract	3.04.01	Bioinformatics	Sapelo
TEToolkit	1.5.0	Bioinformatics	Zcluster
tgicl	2.1	Bioinformatics	Zcluster
Theano	0.8.0	Other	Sapelo
Theano	0.8.0	Other	Zcluster
TIGER	1.02	Bioinformatics	Zcluster
TIGRA	0.4.0	Bioinformatics	Sapelo
tmhmm	2.0c	Bioinformatics	Zcluster
TOFU2	3.9	Bioinformatics	Sapelo
tophat	2.0.14	Bioinformatics	Sapelo
Tophat	2.1.1	Bioinformatics	Sapelo2
tophat	2.0.14	Bioinformatics	Zcluster
trans-abyss	1.4.4	Bioinformatics	Zcluster
TransDecoder	2.0.1	Bioinformatics	Sapelo
TransDecoder	2.0.1	Bioinformatics	Zcluster
Transposome	0.09.7	Bioinformatics	Sapelo
TransposonPSI	08222010	Bioinformatics	Sapelo
Transrate	1.0.1	Bioinformatics	Sapelo
Tracer	v 1.5	Bioinformatics	Zcluster
TRE	4.07b	Bioinformatics	Zcluster
TreeFix	1.1.10	Bioinformatics	Zcluster
TreeFix-DTL	1.0.2	Bioinformatics	Zcluster
TreeMix	1.13	Bioinformatics	Sapelo
treemix	1.12	Bioinformatics	Zcluster
Triangle	1.6	Math Library	Zcluster
trimal	1.4	Bioinformatics	Zcluster
TrimGalore	0.4.4	Bioinformatics	Sapelo
trimmomatic	0.36	Bioinformatics	Sapelo
Trimmomatic	0.36	Bioinformatics	Sapelo2
trimmomatic	0.32	Bioinformatics	Zcluster
TrimGalore	4.0	Bioinformatics	Sapelo
TrimGalore	0.3.7	Bioinformatics	Zcluster
trimreads	07232013	Bioinformatics	Zcluster
Trinity	2.06	Bioinformatics	Sapelo
Trinity	2.5.1	Bioinformatics	Sapelo2
Trinity	2.06	Bioinformatics	Zcluster
Trinotate	3.1.1	Bioinformatics	Sapelo
Trinotate	3.0.1	Bioinformatics	Zcluster
TRNAscan-SE	2.0.0	Bioinformatics	Sapelo
tRNAscan-SE	1.23, 1.3.1	Bioinformatics	Zcluster
UCHIME	4.2.40	Bioinformatics	Sapelo
UClust	1.2.22q	Bioinformatics	Zcluster
UNAFold	3.8	Bioinformatics	Zcluster
UPP	2.0	Other	Zcluster
usearch	10.0.240	Bioinformatics	Sapelo
usearch	7.0.1090_i86	Bioinformatics	Zcluster
UCSC	06-17-2015	Bioinformatics	Sapelo
UCSC	07-11-2014	Bioinformatics	Zcluster
VarScan	2.4.2	Bioinformatics	Sapelo2
varscan	2.3.8	Bioinformatics	Zcluster
vcflib	1.0.0-rc1	Bioinformatics	Sapelo
vcftools	0.1.12b	Bioinformatics	Sapelo
VCFtools	0.1.15	Bioinformatics	Sapelo2
vcftools	0.1.12a	Bioinformatics	Zcluster
velvet	1.2.10	Bioinformatics	Sapelo
Velvet	1.2.10	Bioinformatics	Sapelo2
velvet	1.2.08, 1.2.10	Bioinformatics	Zcluster
VelvetOptimiser	2.2.5	Bioinformatics	Sapelo
VelvetOptimiser	2.2.5	Bioinformatics	Zcluster
VEP	76	Bioinformatics	Zcluster
VICUNA	1.3	Bioinformatics	Zcluster
ViennaRNA	2.1.3	Bioinformatics	Sapelo
ViennaRNA	2.4.3	Bioinformatics	Sapelo2
ViennaRNA	1.8.5, 2.1.7	Bioinformatics	Zcluster
viromescan	05292017	Bioinformatics	Sapelo
virtualenv	1.8.1	Other	Zcluster
VMD	1.9.1	Chemistry	Zcluster
Vmatch	2.3.0	Bioinformatics	Sapelo2
voxnet	0.1	Other	Sapelo
voxnet	0.1	Other	Zcluster
vsearch	1.10.1	Bioinformatics	Sapelo
vsearch	1.1.0	Bioinformatics	Zcluster
VTK	5.8.0	Other	Zcluster
webLogo	3.3	Bioinformatics	Zcluster
weka	3.6.10	Other	Zcluster
wgs	8.2	Bioinformatics	Sapelo
wgs	8.2beta-binary	Bioinformatics	Zcluster
whatshap	0.12	Bioinformatics	Sapelo
wigToBigWig	v4	Bioinformatics	Zcluster
WinHap	2.0	Bioinformatics	Sapelo
WISE2	2.4.1	Bioinformatics	Zcluster
WPS	3.6, 3.6.1, 3.7, 3.8	Other	Sapelo
WPS	3.4.1	Other	Zcluster
WRF	3.6, 3.6.1, 3.7, 3.8	Other	Sapelo
WRF	3.4.1	Other	Zcluster
WRF-Chem	3.6.1, 3.8	Other	Sapelo
WU Blast	2.2.6	Bioinformatics	Sapelo
WU Blast	2.2.6	Bioinformatics	Zcluster
Xander_assembler	7/12/2016	Bioinformatics	Sapelo
xgboost	0.4a30	Other	Zcluster
XP-CLR	1.0	Bioinformatics	Zcluster
Xscape	11182014	Bioinformatics	Zcluster
YAHA	0.1.83	Bioinformatics	Sapelo
YASRA	2.33	Bioinformatics	Sapelo
yasra	2.3	Bioinformatics	Zcluster
yt	3.2.3	Other	Sapelo
Zbar	0.10	Graphics	Sapelo
zlib	1.2.5, 1.2.8	Library	Sapelo
Zorro	2.2	Bioinformatics	Zcluster

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-| [[GATK-Sapelo2|GATK]] || 3.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
+| [[GATK-Sapelo2|GATK]] || 3.8.0, 4.0.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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Software-old: Difference between revisions

Revision as of 15:56, 18 April 2018

Installed Software List

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