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Here is an example of a shell script sub.sh to run on at the batch queue: | Here is an example of a shell script sub.sh to run on at the batch queue: | ||
<pre class="gscript"> | <pre class="gscript"> | ||
#PBS -S /bin/bash | #PBS -S /bin/bash | ||
#PBS -N j_<!-- NAME BEGIN -->trinity<!-- NAME END --> | #PBS -N j_<!-- NAME BEGIN -->trinity<!-- NAME END --> | ||
Revision as of 12:37, 28 March 2018
Category
Bioinformatics
Program On
Sapelo2
Version
2.0.6
Author / Distributor
Trinity
Description
"" More details are at Trinity
Running Program
Also refer to Running Jobs on Sapelo2 Also refer to Run X window Jobs and Run interactive Jobs
The last version is at /usr/local/apps/gb/trinity/2.0.6
Here is an example of a shell script sub.sh to run on at the batch queue:
#PBS -S /bin/bash #PBS -N j_<!-- NAME BEGIN -->trinity<!-- NAME END --> #PBS -q batch #PBS -l nodes=1:ppn=1:AMD #PBS -l walltime=480:00:00 #PBS -l mem=10gb cd $PBS_O_WORKDIR <!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END --> [options] 1>job.out 2>job.err
Here is an example of job submission
qsub ./sub.sh
Documentation
<!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END -->
Installation
source code from Trinity
System
64-bit Linux