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=== Running Program === | === Running Program === | ||
Also refer to [[ | Also refer to [[Running Jobs on zcluster]] | ||
Latest version /usr/local/ncbiblast/latest/ is pointed to /usr/local/ncbiblast/2.26 | Latest version /usr/local/ncbiblast/latest/ is pointed to /usr/local/ncbiblast/2.26 | ||
Revision as of 13:59, 31 January 2013
NCBI Blast
Category: Bioinformatics
Program on
zcluster
Version
2.2.26
Author / Distributor
Description
BLAST (Basic Local Alignment Search Tool), more details at NCBI
Running Program
Also refer to Running Jobs on zcluster
Latest version /usr/local/ncbiblast/latest/ is pointed to /usr/local/ncbiblast/2.26
Example of a shell script blast.sh to run on at the batch queue:
#!/bin/bash cd working_directory time /usr/local/ncbiblast/latest/bin/blastall -p blastn -d /db/ncbiblast/latest/nt -i QUERY -o out.QUERY
qsub -q queuename ./blast.sh
sample of comments
Documentation
NCBI website.
Installation
Executable binary code downloaded from NCBI Blast
System(s)
Unix