Software Template: Difference between revisions

From Research Computing Center Wiki
Jump to navigation Jump to search
No edit summary
No edit summary
Line 36: Line 36:
  qsub -q queuename  ./blast.sh  
  qsub -q queuename  ./blast.sh  
</pre>
</pre>
 
<pre  class="gcomment">
sample of comments
</pre>
=== Documentation ===
=== Documentation ===
   
   

Revision as of 14:01, 31 January 2013

NCBI Blast

Category: Bioinformatics

Program on

zcluster

Version

2.2.26

Author / Distributor

NCBI

Description

BLAST (Basic Local Alignment Search Tool), more details at NCBI

Running Program

Also refer to submit jobs to queues

Latest version /usr/local/ncbiblast/latest/ is pointed to /usr/local/ncbiblast/2.26

Example of a shell script blast.sh to run on at the batch queue:

 #!/bin/bash
 cd working_directory
 time /usr/local/ncbiblast/latest/bin/blastall -p blastn -d /db/ncbiblast/latest/nt -i QUERY -o out.QUERY 
 qsub -q queuename   ./blast.sh 
 sample of comments 

Documentation

NCBI website.

Installation

Executable binary code downloaded from NCBI Blast

System(s)

Unix