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[[Category:Zcluster]] | [[Category:Zcluster]] |
Revision as of 13:35, 14 January 2013
Installed Software List
Last updated 2013-01-14.
Note: Click on the icons to the right of the column headings to sort the table.
Name | Version | Website | Category | Cluster |
---|---|---|---|---|
454 Software | +version+ | +website+ | +category+ | +cluster+ |
aaarf | +version+ | +website+ | +category+ | +cluster+ |
ABySS | +version+ | +website+ | +category+ | +cluster+ |
ABySS-rcluster | +version+ | +website+ | +category+ | +cluster+ |
AlignACE | +version+ | +website+ | +category+ | +cluster+ |
ALLPATHS-LG | +version+ | +website+ | +category+ | +cluster+ |
amos | +version+ | +website+ | +category+ | +cluster+ |
AmpliconNoise | +version+ | +website+ | +category+ | +cluster+ |
ARB | +version+ | +website+ | +category+ | +cluster+ |
Artemis | +version+ | +website+ | +category+ | +cluster+ |
AUGUSTUS | +version+ | +website+ | +category+ | +cluster+ |
AVID | +version+ | +website+ | +category+ | +cluster+ |
Bali-phy-rcluster | +version+ | +website+ | +category+ | +cluster+ |
bam2fastq | +version+ | +website+ | +category+ | +cluster+ |
BEAST | +version+ | +website+ | +category+ | +cluster+ |
454 Software | +version+ | +website+ | +category+ | +cluster+ |
aaarf | +version+ | +website+ | +category+ | +cluster+ |
ABySS | +version+ | +website+ | +category+ | +cluster+ |
ABySS-rcluster | +version+ | +website+ | +category+ | +cluster+ |
AlignACE | +version+ | +website+ | +category+ | +cluster+ |
ALLPATHS-LG | +version+ | +website+ | +category+ | +cluster+ |
amos | +version+ | +website+ | +category+ | +cluster+ |
AmpliconNoise | +version+ | +website+ | +category+ | +cluster+ |
ARB | +version+ | +website+ | +category+ | +cluster+ |
Artemis | +version+ | +website+ | +category+ | +cluster+ |
AUGUSTUS | +version+ | +website+ | +category+ | +cluster+ |
AVID | +version+ | +website+ | +category+ | +cluster+ |
Bali-phy-rcluster | +version+ | +website+ | +category+ | +cluster+ |
bam2fastq | +version+ | +website+ | +category+ | +cluster+ |
BEAST | +version+ | +website+ | +category+ | +cluster+ |
BEDTools | +version+ | +website+ | +category+ | +cluster+ |
BEST Bayesian | +version+ | +website+ | +category+ | +cluster+ |
BEST Binding | +version+ | +website+ | +category+ | +cluster+ |
BFast | +version+ | +website+ | +category+ | +cluster+ |
Bioconductor | +version+ | +website+ | +category+ | +cluster+ |
BioPerl | +version+ | +website+ | +category+ | +cluster+ |
BioPython | +version+ | +website+ | +category+ | +cluster+ |
Bismark Bisulfite Mapper | +version+ | +website+ | +category+ | +cluster+ |
BiSS | +version+ | +website+ | +category+ | +cluster+ |
Blastall | +version+ | +website+ | +category+ | +cluster+ |
Blat | +version+ | +website+ | +category+ | +cluster+ |
BMGE | +version+ | +website+ | +category+ | +cluster+ |
bowtie | +version+ | +website+ | +category+ | +cluster+ |
bowtie2 | +version+ | +website+ | +category+ | +cluster+ |
boxshade | +version+ | +website+ | +category+ | +cluster+ |
breakdancer | +version+ | +website+ | +category+ | +cluster+ |
brownie | +version+ | +website+ | +category+ | +cluster+ |
BS Seeker | +version+ | +website+ | +category+ | +cluster+ |
Burrows-Wheeler Aligner (BWA) | +version+ | +website+ | +category+ | +cluster+ |
CAP3-rcluster IOB | +version+ | +website+ | +category+ | +cluster+ |
cd-hit | +version+ | +website+ | +category+ | +cluster+ |
cdbfasta | +version+ | +website+ | +category+ | +cluster+ |
CEAS | +version+ | +website+ | +category+ | +cluster+ |
CEGMA | +version+ | +website+ | +category+ | +cluster+ |
CELLO | +version+ | +website+ | +category+ | +cluster+ |
circos | +version+ | +website+ | +category+ | +cluster+ |
ClustalW | +version+ | +website+ | +category+ | +cluster+ |
Coding Potential Calculator | +version+ | +website+ | +category+ | +cluster+ |
Codon Usage | +version+ | +website+ | +category+ | +cluster+ |
CodonW | +version+ | +website+ | +category+ | +cluster+ |
CONSEL | +version+ | +website+ | +category+ | +cluster+ |
consensus-v6c | +version+ | +website+ | +category+ | +cluster+ |
cortex_con | +version+ | +website+ | +category+ | +cluster+ |
cortex_var | +version+ | +website+ | +category+ | +cluster+ |
Count | +version+ | +website+ | +category+ | +cluster+ |
count-rcluster | +version+ | +website+ | +category+ | +cluster+ |
CREST | +version+ | +website+ | +category+ | +cluster+ |
cufflinks | +version+ | +website+ | +category+ | +cluster+ |
cutadapt | +version+ | +website+ | +category+ | +cluster+ |
DLCoal | +version+ | +website+ | +category+ | +cluster+ |
ea-utils | +version+ | +website+ | +category+ | +cluster+ |
edena | +version+ | +website+ | +category+ | +cluster+ |
EMBOSS-rcluster | +version+ | +website+ | +category+ | +cluster+ |
emmix | +version+ | +website+ | +category+ | +cluster+ |
ESTScan | +version+ | +website+ | +category+ | +cluster+ |
evm (EVidenceModeler) | +version+ | +website+ | +category+ | +cluster+ |
ExaML | +version+ | +website+ | +category+ | +cluster+ |
exonerate | +version+ | +website+ | +category+ | +cluster+ |
FAR | +version+ | +website+ | +category+ | +cluster+ |
FAR (Flexible Adapter Remover) | +version+ | +website+ | +category+ | +cluster+ |
FASTA | +version+ | +website+ | +category+ | +cluster+ |
fasta format cleaner | +version+ | +website+ | +category+ | +cluster+ |
FastQC | +version+ | +website+ | +category+ | +cluster+ |
fasttree | +version+ | +website+ | +category+ | +cluster+ |
FastX | +version+ | +website+ | +category+ | +cluster+ |
FIRE | +version+ | +website+ | +category+ | +cluster+ |
FitModel | +version+ | +website+ | +category+ | +cluster+ |
FLASH | +version+ | +website+ | +category+ | +cluster+ |
FrameDP | +version+ | +website+ | +category+ | +cluster+ |
GapFiller | +version+ | +website+ | +category+ | +cluster+ |
gatk | +version+ | +website+ | +category+ | +cluster+ |
Gblocks | +version+ | +website+ | +category+ | +cluster+ |
Gblocks-rcluster | +version+ | +website+ | +category+ | +cluster+ |
GCG (Wisconsin Package) | +version+ | +website+ | +category+ | +cluster+ |
GeneMark | +version+ | +website+ | +category+ | +cluster+ |
Genezilla | +version+ | +website+ | +category+ | +cluster+ |
Genome | +version+ | +website+ | +category+ | +cluster+ |
GenomeMapper | +version+ | +website+ | +category+ | +cluster+ |
GenomeTools | +version+ | +website+ | +category+ | +cluster+ |
gfftosam (BaseQV) | +version+ | +website+ | +category+ | +cluster+ |
Glimmer | +version+ | +website+ | +category+ | +cluster+ |
GlimmerHMM | +version+ | +website+ | +category+ | +cluster+ |
gmap | +version+ | +website+ | +category+ | +cluster+ |
gmap-gsnap | +version+ | +website+ | +category+ | +cluster+ |
go-perl | +version+ | +website+ | +category+ | +cluster+ |
gpu-blast | +version+ | +website+ | +category+ | +cluster+ |
Hmmer | +version+ | +website+ | +category+ | +cluster+ |
htseq | +version+ | +website+ | +category+ | +cluster+ |
I-TASSER | +version+ | +website+ | +category+ | +cluster+ |
IDEG | +version+ | +website+ | +category+ | +cluster+ |
igb | +version+ | +website+ | +category+ | +cluster+ |
IGV | +version+ | +website+ | +category+ | +cluster+ |
IMa | +version+ | +website+ | +category+ | +cluster+ |
indel-Seq-Gen | +version+ | +website+ | +category+ | +cluster+ |
InStruct | +version+ | +website+ | +category+ | +cluster+ |
inteRNA | +version+ | +website+ | +category+ | +cluster+ |
iParameterEstimation (iPE) | +version+ | +website+ | +category+ | +cluster+ |
iprscan (InterProScan) | +version+ | +website+ | +category+ | +cluster+ |
iscan | +version+ | +website+ | +category+ | +cluster+ |
Jellyfish | +version+ | +website+ | +category+ | +cluster+ |
k-link | +version+ | +website+ | +category+ | +cluster+ |
kaas | +version+ | +website+ | +category+ | +cluster+ |
KiNG | +version+ | +website+ | +category+ | +cluster+ |
LAGAN | +version+ | +website+ | +category+ | +cluster+ |
LASTZ | +version+ | +website+ | +category+ | +cluster+ |
LDDist | +version+ | +website+ | +category+ | +cluster+ |
LDhat | +version+ | +website+ | +category+ | +cluster+ |
libsequence | +version+ | +website+ | +category+ | +cluster+ |
LocARNA | +version+ | +website+ | +category+ | +cluster+ |
lsa | +version+ | +website+ | +category+ | +cluster+ |
LUCY-rcluster | +version+ | +website+ | +category+ | +cluster+ |
macs | +version+ | +website+ | +category+ | +cluster+ |
mafft | +version+ | +website+ | +category+ | +cluster+ |
maker | +version+ | +website+ | +category+ | +cluster+ |
MAQ | +version+ | +website+ | +category+ | +cluster+ |
MaTogff | +version+ | +website+ | +category+ | +cluster+ |
MCL | +version+ | +website+ | +category+ | +cluster+ |
MCL-rcluster | +version+ | +website+ | +category+ | +cluster+ |
MDscan | +version+ | +website+ | +category+ | +cluster+ |
megan | +version+ | +website+ | +category+ | +cluster+ |
MEME | +version+ | +website+ | +category+ | +cluster+ |
MFOLD | +version+ | +website+ | +category+ | +cluster+ |
Migrate | +version+ | +website+ | +category+ | +cluster+ |
Minia | +version+ | +website+ | +category+ | +cluster+ |
MIRA | +version+ | +website+ | +category+ | +cluster+ |
miRanda | +version+ | +website+ | +category+ | +cluster+ |
mosaik | +version+ | +website+ | +category+ | +cluster+ |
MOTHUR | +version+ | +website+ | +category+ | +cluster+ |
MOTHUR-rcluster | +version+ | +website+ | +category+ | +cluster+ |
mpiblast | +version+ | +website+ | +category+ | +cluster+ |
MrBayes | +version+ | +website+ | +category+ | +cluster+ |
mrfast | +version+ | +website+ | +category+ | +cluster+ |
MSA | +version+ | +website+ | +category+ | +cluster+ |
MSBlast | +version+ | +website+ | +category+ | +cluster+ |
MSPcrunch | +version+ | +website+ | +category+ | +cluster+ |
Multiz | +version+ | +website+ | +category+ | +cluster+ |
MUMmer | +version+ | +website+ | +category+ | +cluster+ |
MUSCLE | +version+ | +website+ | +category+ | +cluster+ |
mVISTA | +version+ | +website+ | +category+ | +cluster+ |
MyScanACE | +version+ | +website+ | +category+ | +cluster+ |
NCBI Blast | +version+ | +website+ | +category+ | +cluster+ |
NCBI Blast + | +version+ | +website+ | +category+ | +cluster+ |
ncbi blast parsers | +version+ | +website+ | +category+ | +cluster+ |
NCBI_database | +version+ | +website+ | +category+ | +cluster+ |
Newbler | +version+ | +website+ | +category+ | +cluster+ |
ngs_backbone | +version+ | +website+ | +category+ | +cluster+ |
NH PhyloBayes | +version+ | +website+ | +category+ | +cluster+ |
nhPhyML | +version+ | +website+ | +category+ | +cluster+ |
NovelSeq | +version+ | +website+ | +category+ | +cluster+ |
NovoAlign | +version+ | +website+ | +category+ | +cluster+ |
nupack | +version+ | +website+ | +category+ | +cluster+ |
Oases | +version+ | +website+ | +category+ | +cluster+ |
opal | +version+ | +website+ | +category+ | +cluster+ |
OSPREY | +version+ | +website+ | +category+ | +cluster+ |
p4 | +version+ | +website+ | +category+ | +cluster+ |
pagan | +version+ | +website+ | +category+ | +cluster+ |
PAML | +version+ | +website+ | +category+ | +cluster+ |
pandaseq | +version+ | +website+ | +category+ | +cluster+ |
Papara_nt | +version+ | +website+ | +category+ | +cluster+ |
PASHA | +version+ | +website+ | +category+ | +cluster+ |
PeakSplitter | +version+ | +website+ | +category+ | +cluster+ |
pebl | +version+ | +website+ | +category+ | +cluster+ |
pfamDNASearch | +version+ | +website+ | +category+ | +cluster+ |
Pfam_scan | +version+ | +website+ | +category+ | +cluster+ |
pftools | +version+ | +website+ | +category+ | +cluster+ |
phred/phrap/conced | +version+ | +website+ | +category+ | +cluster+ |
PHYLIP | +version+ | +website+ | +category+ | +cluster+ |
PhyloBayes | +version+ | +website+ | +category+ | +cluster+ |
PHYML | +version+ | +website+ | +category+ | +cluster+ |
picard | +version+ | +website+ | +category+ | +cluster+ |
PIIM | +version+ | +website+ | +category+ | +cluster+ |
plink | +version+ | +website+ | +category+ | +cluster+ |
PolyBayes-rcluster | +version+ | +website+ | +category+ | +cluster+ |
pplacer | +version+ | +website+ | +category+ | +cluster+ |
prank | +version+ | +website+ | +category+ | +cluster+ |
primegsr | +version+ | +website+ | +category+ | +cluster+ |
Primer3 | +version+ | +website+ | +category+ | +cluster+ |
PrIMETV | +version+ | +website+ | +category+ | +cluster+ |
PSLDoc | +version+ | +website+ | +category+ | +cluster+ |
PSORTb | +version+ | +website+ | +category+ | +cluster+ |
Pyrobayes,Mosaik,GigaBayes, | +version+ | +website+ | +category+ | +cluster+ |
pysam | +version+ | +website+ | +category+ | +cluster+ |
Qiime | +version+ | +website+ | +category+ | +cluster+ |
Qiime-rcluster | +version+ | +website+ | +category+ | +cluster+ |
QTL Cartographer | +version+ | +website+ | +category+ | +cluster+ |
quake | +version+ | +website+ | +category+ | +cluster+ |
RactIP | +version+ | +website+ | +category+ | +cluster+ |
RAxML | +version+ | +website+ | +category+ | +cluster+ |
RAxML-Light | +version+ | +website+ | +category+ | +cluster+ |
Ray | +version+ | +website+ | +category+ | +cluster+ |
RBR | +version+ | +website+ | +category+ | +cluster+ |
RCCBatchBlast | +version+ | +website+ | +category+ | +cluster+ |
RECON | +version+ | +website+ | +category+ | +cluster+ |
RECON | +version+ | +website+ | +category+ | +cluster+ |
RepeatFinder | +version+ | +website+ | +category+ | +cluster+ |
Repeatmasker | +version+ | +website+ | +category+ | +cluster+ |
RepeatModeler | +version+ | +website+ | +category+ | +cluster+ |
RepeatScout | +version+ | +website+ | +category+ | +cluster+ |
Reputer | +version+ | +website+ | +category+ | +cluster+ |
riboPicker | +version+ | +website+ | +category+ | +cluster+ |
RMBlast | +version+ | +website+ | +category+ | +cluster+ |
RNAz | +version+ | +website+ | +category+ | +cluster+ |
rnnotator | +version+ | +website+ | +category+ | +cluster+ |
Roche | +version+ | +website+ | +category+ | +cluster+ |
RSAT | +version+ | +website+ | +category+ | +cluster+ |
RSEM | +version+ | +website+ | +category+ | +cluster+ |
RUM | +version+ | +website+ | +category+ | +cluster+ |
samtools | +version+ | +website+ | +category+ | +cluster+ |
SATé | +version+ | +website+ | +category+ | +cluster+ |
scipio | +version+ | +website+ | +category+ | +cluster+ |
SeqClean | +version+ | +website+ | +category+ | +cluster+ |
SEQuel | +version+ | +website+ | +category+ | +cluster+ |
SHE-RA | +version+ | +website+ | +category+ | +cluster+ |
SHORE | +version+ | +website+ | +category+ | +cluster+ |
shorha | +version+ | +website+ | +category+ | +cluster+ |
SHRIMP | +version+ | +website+ | +category+ | +cluster+ |
sickle | +version+ | +website+ | +category+ | +cluster+ |
SiZer | +version+ | +website+ | +category+ | +cluster+ |
slclust | +version+ | +website+ | +category+ | +cluster+ |
SNAP | +version+ | +website+ | +category+ | +cluster+ |
snowhite | +version+ | +website+ | +category+ | +cluster+ |
snpEff | +version+ | +website+ | +category+ | +cluster+ |
SNVMix2 | +version+ | +website+ | +category+ | +cluster+ |
soap2 | +version+ | +website+ | +category+ | +cluster+ |
SOAPdenovo | +version+ | +website+ | +category+ | +cluster+ |
SOAPdenovo-trans | +version+ | +website+ | +category+ | +cluster+ |
SOAPdenovo2 | +version+ | +website+ | +category+ | +cluster+ |
socs | +version+ | +website+ | +category+ | +cluster+ |
SomaticCall | +version+ | +website+ | +category+ | +cluster+ |
spaln | +version+ | +website+ | +category+ | +cluster+ |
spimap | +version+ | +website+ | +category+ | +cluster+ |
SpliceGrapher | +version+ | +website+ | +category+ | +cluster+ |
splign | +version+ | +website+ | +category+ | +cluster+ |
SRA | +version+ | +website+ | +category+ | +cluster+ |
SSAHA2 | +version+ | +website+ | +category+ | +cluster+ |
SSPACE | +version+ | +website+ | +category+ | +cluster+ |
stacks | +version+ | +website+ | +category+ | +cluster+ |
STAMP | +version+ | +website+ | +category+ | +cluster+ |
STEM | +version+ | +website+ | +category+ | +cluster+ |
strauto | +version+ | +website+ | +category+ | +cluster+ |
structure | +version+ | +website+ | +category+ | +cluster+ |
SUPERSPLAT | +version+ | +website+ | +category+ | +cluster+ |
SVDetect | +version+ | +website+ | +category+ | +cluster+ |
SVM_Light | +version+ | +website+ | +category+ | +cluster+ |
T-Coffee | +version+ | +website+ | +category+ | +cluster+ |
T-Coffee-rcluster | +version+ | +website+ | +category+ | +cluster+ |
tabix | +version+ | +website+ | +category+ | +cluster+ |
tagdust | +version+ | +website+ | +category+ | +cluster+ |
Tandem Repeats Finder | +version+ | +website+ | +category+ | +cluster+ |
tassel | +version+ | +website+ | +category+ | +cluster+ |
tgicl | +version+ | +website+ | +category+ | +cluster+ |
TIGER | +version+ | +website+ | +category+ | +cluster+ |
tophat | +version+ | +website+ | +category+ | +cluster+ |
topHat-fusion-rcluster | +version+ | +website+ | +category+ | +cluster+ |
Tracer | +version+ | +website+ | +category+ | +cluster+ |
TreeBeST | +version+ | +website+ | +category+ | +cluster+ |
TreeView X | +version+ | +website+ | +category+ | +cluster+ |
Trinity | +version+ | +website+ | +category+ | +cluster+ |
tRNAscan-SE | +version+ | +website+ | +category+ | +cluster+ |
twinScan/n-Scan | +version+ | +website+ | +category+ | +cluster+ |
UNAFold | +version+ | +website+ | +category+ | +cluster+ |
usearch | +version+ | +website+ | +category+ | +cluster+ |
vcftools | +version+ | +website+ | +category+ | +cluster+ |
velvet | +version+ | +website+ | +category+ | +cluster+ |
VelvetOptimiser | +version+ | +website+ | +category+ | +cluster+ |
ViennaRNA | +version+ | +website+ | +category+ | +cluster+ |
vmatch | +version+ | +website+ | +category+ | +cluster+ |
wcdest | +version+ | +website+ | +category+ | +cluster+ |
wigToBigWig | +version+ | +website+ | +category+ | +cluster+ |
WISE2 | +version+ | +website+ | +category+ | +cluster+ |
WU Blast | +version+ | +website+ | +category+ | +cluster+ |
yasra | +version+ | +website+ | +category+ | +cluster+ |