Software: Difference between revisions

From Research Computing Center Wiki
Jump to navigation Jump to search
No edit summary
No edit summary
Line 1,299: Line 1,299:
<!-- | [[qiaseq-16S-Sapelo2|qiaseq-16S]] || 20190306 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[qiaseq-16S-Sapelo2|qiaseq-16S]] || 20190306 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[QIIME2-Sapelo2|QIIME2]] || 2019.10, 2020.6, 2020.2, 2020.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[QIIME2-Sapelo2|QIIME2]] || 2019.10, 2020.2, 2020.6, 2020.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | [[QIIME2-Teaching|QIIME2]] || 2018.4, 2018.6, 2018.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[QIIME2-Teaching|QIIME2]] || 2018.4, 2018.6, 2018.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  

Revision as of 15:32, 7 May 2021

On Sapelo2 and on the Teaching cluster users have the option to install their own software or use software installed centrally by the GACRC staff. Detailed information on how to find and access software packages installed on Sapelo2 are available at the Software on Sapelo2 page.

Below is a very limited list of software packages installed on Sapelo2 and on the Teaching cluster. We only intend to make an application page for software packages that requires extra documentation not covered in Software on Sapelo2.

To view a list of all modules installed on Sapelo2/Teaching, along with a short description of each module, please run the following command on Sapelo2/Teaching:

module spider

You can also use the command above to search for a specific application. For more information, please see Lmod.

Note: Although we have not made individual software pages for the applications installed on Sapelo2, there are currently over 600 software packages installed there. For more information, please see Software on Sapelo2.

Partial List of Installed Software

Last updated 2021-05-07. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

e nfsd lo
Name Version Category Cluster Top
basespace-cli 1.2.1 Bioinformatics Sapelo2 Up20.png
Beast 1.10.4, 2.6.2, 2.6.3 Bioinformatics Sapelo2 Up20.png
BionanoSolve 3.6.1-11162020 Bioinformatics Sapelo2 Up20.png
Biopython 1.75 Bioinformatics Teaching Up20.png
BLAST+ 2.9.0 Bioinformatics Teaching Up20.png
BLAST 2.2.26 Bioinformatics Teaching Up20.png
Bowtie2 2.3.5.1, 2.4.1 Bioinformatics Teaching Up20.png
BUSCO 4.0.5, 4.0.6 Bioinformatics Sapelo2 Up20.png
Canu 2.1.1 Bioinformatics Sapelo2 Up20.png
CellRanger-ATAC 1.2.0, 2.0.0 Bioinformatics Sapelo2 Up20.png
CUDA 9.2.88, 10.1.243 Programming Sapelo2 Up20.png
Cytoscape 3.7.2 Bioinformatics Teaching Up20.png
EIGENSOFT 7.2.1 Bioinformatics Teaching Up20.png
GAUSSIAN 09, 16 Chemistry Sapelo2 Up20.png
GAUSSIAN 16 Chemistry Teaching Up20.png
GaussView 5, 6.1 Chemistry Sapelo2 Up20.png
GaussView 6.1 Chemistry Teaching Up20.png
GeneMarkES 4.57 Bioinformatics Sapelo2 Up20.png
HISAT2 2.1.0 Bioinformatics Teaching Up20.png
HPCGridRunner 1.0.2 Tools Sapelo2 Up20.png
iCommands 4.2.8 Tools Sapelo2 Up20.png
InterProScan 5.44-90.0, 5.51-85.0 Bioinformatics Sapelo2 Up20.png
IQ-Tree 1.6.12 Bioinformatics Teaching Up20.png
Java 1.8.0_144, 1.8.0_241, 11.0.2 Programming Teaching Up20.png
Jupyter 5.0.0, 5.6.0, 6.0.3 Other Sapelo2 Up20.png
Magma 2.25 Other Sapelo2 Up20.png
Maker 3.01.03 Bioinformatics Sapelo2 Up20.png
Matlab R2019b, R2020a, R2020b, R2021a Programming Sapelo2 Up20.png
Medusa 1.6 Bioinformatics Sapelo2 Up20.png
MOTECC_qmdcp 90 Chemistry Teaching Up20.png
Ont-Guppy 4.4.2 Bioinformatics Sapelo2 Up20.png
ORCA 4.2.1 Chemistry Sapelo2 Up20.png
ORP 2.2.6 Bioinformatics Sapelo2 Up20.png
PAML 4.9i Bioinformatics Teaching Up20.png
Perl 5.30.0 Programming Teaching Up20.png
Python 2.7.14, 2.7.15, 2.7.16, 3.7.4, 3.8.2 Programming Sapelo2 Up20.png
Python 3.7.4, 2.7.16 Programming Teaching Up20.png
QIIME2 2019.10, 2020.2, 2020.6, 2020.11 Bioinformatics Sapelo2 Up20.png
R 3.5.0, 3.6.2, 4.0.0 Statistics Sapelo2 Up20.png
R 4.0.0 Statistics Teaching Up20.png
Racon 1.4.13 Bioinformatics Sapelo2 Up20.png
RAxML 8.2.11, 8.2.12 Bioinformatics Sapelo2 Up20.png
RAxML 8.2.12 Bioinformatics Teaching Up20.png
RevBayes 1.1.0 Bioinformatics Teaching Up20.png
Rosetta 2020.28.61328 Chemistry Sapelo2 Up20.png
SAMtools 0.1.20, 1.9, 1.10 Bioinformatics Teaching Up20.png
smoke 4.7 Other Sapelo2 Up20.png
StringTie 2.1.1 Bioinformatics Teaching Up20.png
Structure 2.3.4 Bioinformatics Teaching Up20.png
Trinity 2.5.1, 2.8.4, 2.8.5, 2.9.1, 2.10.0 Bioinformatics Sapelo2 Up20.png

Back To Top Up20.png