ICommands-Sapelo2: Difference between revisions
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=== Running Program === | === Running Program === | ||
https://wiki.gacrc.uga.edu/wiki/Transferring_Files | |||
Please log on Sapelo2 cluster transfer node to use iCommands | *version 4.1.12, installed on Sapelo2 transfer nodes (xfer.gacrc.uga.edu) | ||
Please log on Sapelo2 cluster transfer node to use iCommands. | |||
<pre class="gscript"> | <pre class="gscript"> | ||
Revision as of 10:42, 8 December 2020
Category
Tools
Program On
Sapelo2
Version
4.1.12
Author / Distributor
Please see iCommands
Description
From iCommands: "iCommands is a collection of commands for Linux and Mac OS operating systems that are used in the iRODS system to interact with the CyVerse Data Store."
Running Program
https://wiki.gacrc.uga.edu/wiki/Transferring_Files
- version 4.1.12, installed on Sapelo2 transfer nodes (xfer.gacrc.uga.edu)
Please log on Sapelo2 cluster transfer node to use iCommands.
ssh username@xfer.gacrc.uga.edu
The blast results for the each of the split group will be in a separate file under the specified output directory. The file name will end in fa.OUT. To gather the blast output you can generally concatenate all the individual outputs. You can use the following command to find and concatenate all the output files.
find OUTPUT_DIR -name '*.fa.OUT' | xargs cat > combined_blast_results.out
Documentation
Please see http://hpcgridrunner.github.io/
Installation
Installed in /apps/eb/HpcGridRunner/1.0.2
System
64-bit Linux