Software: Difference between revisions
No edit summary |
No edit summary |
||
| Line 301: | Line 301: | ||
<!-- | [[CRISPResso-Sapelo2|CRISPResso]] || 1.0.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[CRISPResso-Sapelo2|CRISPResso]] || 1.0.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| [[CUDA-Sapelo2|CUDA]] || 9.2.88, 10.1.243 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |- | ||
<!-- | [[cuDNN-Sapelo2|cuDNN]] || 7.0.4, 7.2.1.38, 7.4.2.24 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[cuDNN-Sapelo2|cuDNN]] || 7.0.4, 7.2.1.38, 7.4.2.24 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| Line 825: | Line 825: | ||
<!-- | [[Magma-GPU-Sapelo2|Magma-GPU]] || 2.3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[Magma-GPU-Sapelo2|Magma-GPU]] || 2.3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| [[Magma-Sapelo2|Magma]] || 2.25 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |- | ||
<!-- | [[mahotas-Sapelo2|mahotas]] || 1.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[mahotas-Sapelo2|mahotas]] || 1.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
Revision as of 13:03, 28 October 2020
On Sapelo2 and on the Teaching cluster users have the option to install their own software or use software installed centrally by the GACRC staff. Detailed information on how to find and access software packages installed on Sapelo2 are available at the Software on Sapelo2 page.
Below is a very limited list of software packages installed on Sapelo2 and on the Teaching cluster. We only intend to make an application page for software packages that requires extra documentation not covered in Software on Sapelo2.
To view a list of all modules installed on Sapelo2/Teaching, along with a short description of each module, please run the following command on Sapelo2/Teaching:
module spider
You can also use the command above to search for a specific application. For more information, please see Lmod.
Note: Although we have not made individual software pages for the applications installed on Sapelo2, there are currently over 600 software packages installed there. For more information, please see Software on Sapelo2.
Partial List of Installed Software
Last updated 2020-10-28. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
| Name | Version | Category | Cluster | Top |
|---|---|---|---|---|
| Biopython | 1.75 | Bioinformatics | Teaching | 
|
| BLAST+ | 2.9.0 | Bioinformatics | Teaching |
|
| BLAST | 2.2.26 | Bioinformatics | Teaching |
|
| Bowtie2 | 2.3.5.1, 2.4.1 | Bioinformatics | Teaching |
|
| BUSCO | 4.0.5, 4.0.6 | Bioinformatics | Sapelo2 |
|
| CUDA | 9.2.88, 10.1.243 | Programming | Sapelo2 |
|
| Cytoscape | 3.7.2 | Bioinformatics | Teaching |
|
| GAUSSIAN | 16 | Chemistry | Teaching |
|
| GaussView | 6.1 | Chemistry | Teaching |
|
| HISAT2 | 2.1.0 | Bioinformatics | Teaching |
|
| IQ-Tree | 1.6.12 | Bioinformatics | Teaching |
|
| Java | 1.8.0_144, 1.8.0_241, 11.0.2 | Programming | Teaching |
|
| Magma | 2.25 | Other | Sapelo2 |
|
| Maker | 3.01.03 | Bioinformatics | Sapelo2 |
|
| PAML | 4.9i | Bioinformatics | Teaching |
|
| Perl | 5.30.0 | Programming | Teaching |
|
| Python | 3.7.4, 2.7.16 | Programming | Teaching |
|
| R | 4.0.0 | Statistics | Teaching |
|
| RAxML | 8.2.12 | Bioinformatics | Teaching |
|
| SAMtools | 0.1.20, 1.9, 1.10 | Bioinformatics | Teaching |
|
| StringTie | 2.1.1 | Bioinformatics | Teaching |
|