BLAST Databases-Sapelo2: Difference between revisions
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'''Blast database - version 4''' | '''Blast database - version 4''' | ||
Each database is located at a directory with name pattern as /db/ncbiblast/''dbname''/'' | Each database is located at a directory with name pattern as /db/ncbiblast/''dbname''/''month-date-year'', where ''dbname'' is the name of the database, such as nr, nt, taxdb, refseq_rna, refseq_protein, mouse_genome, human_genome, swissprot, etc. | ||
For example, an nr database downloaded on June 04, 2020 will be available in /db/ncbiblast/nr/ | For example, an nr database downloaded on June 04, 2020 will be available in /db/ncbiblast/nr/06042020. | ||
Available databases: | Available databases: | ||
<pre class="gscript"> | <pre class="gscript"> | ||
/db/ncbiblast/human_genome/ | /db/ncbiblast/human_genome/06042020 | ||
/db/ncbiblast/mouse_genome/ | /db/ncbiblast/mouse_genome/06042020 | ||
/db/ncbiblast/nr/ | /db/ncbiblast/nr/06042020 | ||
/db/ncbiblast/nt/ | /db/ncbiblast/nt/06042020 | ||
/db/ncbiblast/refseq_rna/ | /db/ncbiblast/refseq_rna/06042020 | ||
/db/ncbiblast/refseq_protein/ | /db/ncbiblast/refseq_protein/06042020 | ||
/db/ncbiblast/swissprot/ | /db/ncbiblast/swissprot/06042020 | ||
/db/ncbiblast/taxdb/ | /db/ncbiblast/taxdb/06042020 | ||
</pre> | </pre> | ||
Revision as of 07:30, 5 June 2020
Blast database - version 4
Each database is located at a directory with name pattern as /db/ncbiblast/dbname/month-date-year, where dbname is the name of the database, such as nr, nt, taxdb, refseq_rna, refseq_protein, mouse_genome, human_genome, swissprot, etc.
For example, an nr database downloaded on June 04, 2020 will be available in /db/ncbiblast/nr/06042020.
Available databases:
/db/ncbiblast/human_genome/06042020 /db/ncbiblast/mouse_genome/06042020 /db/ncbiblast/nr/06042020 /db/ncbiblast/nt/06042020 /db/ncbiblast/refseq_rna/06042020 /db/ncbiblast/refseq_protein/06042020 /db/ncbiblast/swissprot/06042020 /db/ncbiblast/taxdb/06042020
Blast database - version 5
Each database is located at a directory with name pattern as /db/ncbiblast.v5/dbname, where dbname is the name of the database, such as nr, nt, taxdb, refseq_rna, swissprot, etc.
For example, an nr database downloaded on June 04, 2020 will be available in /db/ncbiblast.v5/nr