BioPerl-Teaching: Difference between revisions
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module load BioPerl/1.7.1-foss-2016b-Perl-5.24.1 | |||
perl -MBio::Root::Version -e 'print $Bio::Root::Version::VERSION,"\n"' | |||
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In the real submission script, at least all the above underlined values need to be reviewed or to be replaced by the proper values. | In the real submission script, at least all the above underlined values need to be reviewed or to be replaced by the proper values. | ||
Revision as of 14:41, 10 August 2018
Category
Bioinformatics
Program On
Teaching
Version
1.7.1
Author / Distributor
Description
"Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects." More details are at BioPerl
Running Program
The last version of this application is at /usr/local/apps/eb/BioPerl/1.7.1-foss-2016b-Perl-5.24.1
To use this version, please load the module with
ml BioPerl/1.7.1-foss-2016b-Perl-5.24.1
Here is an example of a shell script, sub.sh, to run on the batch queue:
module load BioPerl/1.7.1-foss-2016b-Perl-5.24.1 perl -MBio::Root::Version -e 'print $Bio::Root::Version::VERSION,"\n"'
In the real submission script, at least all the above underlined values need to be reviewed or to be replaced by the proper values.
Please refer to Running_Jobs_on_the_teaching_cluster, Run X window Jobs and Run interactive Jobs for more details of running jobs at Teaching cluster.
Here is an example of job submission command:
sbatch ./sub.sh
Documentation
ml BioPerl/1.7.1-foss-2016b-Perl-5.24.1
Installation
Source code is obtained from BioPerl
System
64-bit Linux