YH-S2-Template

Category

Bioinformatics 

Program On

Sapelo2

Version

2.0.6

Author / Distributor

Trinity 

Description

"" More details are at Trinity

Running Program

The last version of this application is at trinity

To use this version, please load the module with

ml <!-- TEST_MODULE BEGIN --><!-- TEST_MODULE END --> 

Here is an example of a shell script, sub.sh, to run on the batch queue:

#PBS -S /bin/bash
#PBS -N j_trinity
#PBS -q batch
#PBS -l nodes=1:ppn=1:AMD
#PBS -l walltime=8:00:00
#PBS -l mem=10gb
#PBS -M username@uga.edu
#PBS -m abe

cd $PBS_O_WORKDIR
ml

[options]
  

In the real submission script, at least all the above underlined values need to be reviewed or to be replaced by the proper values.

Please refer to Running Jobs on Sapelo2, Run X window Jobs and Run interactive Jobs for more details about running jobs at Sapelo2.

Here is an example of job submission command:

qsub  ./sub.sh 

Documentation

ml <!-- TEST_MODULE BEGIN --><!-- TEST_MODULE END -->   
<!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END --> <!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END -->

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Installation

Source code is obtained from Trinity

System

64-bit Linux