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|-
|-
| [[Artemis-Sapelo2|Artemis]] || 17.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[Artemis-Sapelo2|Artemis]] || 17.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="A">[[Artemis-Teaching|Artemis]]  || 17.0.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[AStalavista-Sapelo|AStalavista]] || 3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[AStalavista-Sapelo|AStalavista]] || 3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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|-
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| [[AUGUSTUS-Sapelo2|AUGUSTUS]]  || 3.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[AUGUSTUS-Sapelo2|AUGUSTUS]]  || 3.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="A">[[AUGUSTUS-Teaching|AUGUSTUS]]  || 3.2.3|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| <span id="B"></span>[[BAGEL-Sapelo|BAGEL]] || 2016.12.14, 2017.02.13 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| <span id="B"></span>[[BAGEL-Sapelo|BAGEL]] || 2016.12.14, 2017.02.13 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[BCFtools-Sapelo2|BCFtools]] || 1.3.1, 1.6, 1.8  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[BCFtools-Sapelo2|BCFtools]] || 1.3.1, 1.6, 1.8  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="B">[[BCFtools-Teaching|BCFtools]]  || 1.8, 1.6, 1.3.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[bcl2fastq-Sapelo|bcl2fastq]] || 2.17.1.14  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[bcl2fastq-Sapelo|bcl2fastq]] || 2.17.1.14  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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| [[BEDTools-Sapelo2|BEDTools]] || 2.26.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[BEDTools-Sapelo2|BEDTools]] || 2.26.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[BLAST+-Sapelo2|BLAST+]] || 2.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| <span id="B">[[BEDTools-Teaching|BEDTools]] || 2.26.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| <span id="B">[[BioPerl-Teaching|BioPerl]]  || 1.7.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="B">[[Biopython-Teaching|Biopython]]  || 1.68|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[BLAST-Sapelo2|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[BLAST-Sapelo2|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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| [[Bison-Sapelo2|Bison]] || 2.7, 3.0.2, 3.0.4 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[Bison-Sapelo2|Bison]] || 2.7, 3.0.2, 3.0.4 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Blast2lca-Sapelo|Blast2lca]] || 0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="B">[[BLAST-Teaching|BLAST]]  || 2.2.26|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="B">[[BLAST+-Teaching|BLAST+]] || 2.6.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Blat-Sapelo|Blat]] || 36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[Blat-Sapelo|Blat]] || 36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[bowtie2-Sapelo2|bowtie2]] || 2.2.3, 2.3.3, 2.3.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[bowtie2-Sapelo2|bowtie2]] || 2.2.3, 2.3.3, 2.3.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="B">[[Bowtie2-Teaching|Bowtie2]]  || 2.3.4.1, 2.3.3, 2.2.3|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[BP&P-Sapelo|BP&P]] || 4.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[BP&P-Sapelo|BP&P]] || 4.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[BWA-Sapelo2| BWA ]] || 0.7.15, 0.7.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[BWA-Sapelo2| BWA ]] || 0.7.15, 0.7.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="B">[[BWA-Teaching|BWA]]  || 0.7.17, 0.7.15|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| <span id="C"></span> [[Caffe-Sapelo|Caffe]] || 12.04.2015|| [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| <span id="C"></span> [[Caffe-Sapelo|Caffe]] || 12.04.2015|| [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[canu-Sapelo2|canu]] || 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[canu-Sapelo2|canu]] || 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="C">[[canu-Teaching|Canu]]  || 1.7, 1.6, 1.5, 1.4|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[CAP-miRSeq-Sapelo2|CAP-miRSeq]] || 05/20184 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[CAP-miRSeq-Sapelo2|CAP-miRSeq]] || 05/20184 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[Cufflinks-Sapelo2|Cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[Cufflinks-Sapelo2|Cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="C">[[Cufflinks-Teaching|Cufflinks]]  || 2.2.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[cURL-Sapelo2|cURL]] || 7.49.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[cURL-Sapelo2|cURL]] || 7.49.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[datamash-Sapelo|datamash]] || 1.0.7 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[datamash-Sapelo|datamash]] || 1.0.7 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="D">[[DBG2OLC-Teaching|DBG2OLC]]  || 20170208|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Ddocent-Sapelo|ddocent]]  || 2.2.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[Ddocent-Sapelo|ddocent]]  || 2.2.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[EMBOSS-Sapelo2|EMBOSS]] || 6.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[EMBOSS-Sapelo2|EMBOSS]] || 6.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="E">[[EMBOSS-Teaching|EMBOSS]]  || 6.6.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[emirge-Sapelo|emirge]] ||0.61.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[emirge-Sapelo|emirge]] ||0.61.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[FriBidi-Sapelo2|FriBidi]] || 1.0.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[FriBidi-Sapelo2|FriBidi]] || 1.0.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="G">[[GAG-Teaching|GAG]]  || 2.0.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| <span id="G"></span>[[gam-ngs-Sapelo|gam-ngs]] || 1.1b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| <span id="G"></span>[[gam-ngs-Sapelo|gam-ngs]] || 1.1b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[GapFiller-Sapelo|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[GapFiller-Sapelo|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="G">[[GapFiller-Teaching|GapFiller]]  || 2.1.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[GAPIT-Sapelo2|GAPIT]] || 20180524 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[GAPIT-Sapelo2|GAPIT]] || 20180524 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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| [[GATK-Sapelo2|GATK]] || 3.4-0, 3.8-0, 4.0.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[GATK-Sapelo2|GATK]] || 3.4-0, 3.8-0, 4.0.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Gatk_lite-Sapelo|gatk_lite]]  || 2.3.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="G">[[GATK-Teaching|GATK]]  || 3.8-0, 3.4-0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[GAUSSIAN-Sapelo|GAUSSIAN]] || 09 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[GAUSSIAN-Sapelo|GAUSSIAN]] || 09 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[GeneMarkES-Sapelo2|GeneMarkES]]  || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[GeneMarkES-Sapelo2|GeneMarkES]]  || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="G">[[GeneMarkES-Teaching|GeneMarkES]]  || 4.33|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[GeneMarkS-Sapelo2|GeneMarkS]]  ||4.30|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[GeneMarkS-Sapelo2|GeneMarkS]]  ||4.30|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[Java-Sapelo2|Java]] || 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[Java-Sapelo2|Java]] || 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="J">[[Java-Teaching|Java]]  || 1.8.0_144, 1.8.0_141, 1.8.0_121, 1.8.0_112, 1.8.0_92|| [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Jellyfish-Sapelo|Jellyfish]] || 2.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[Jellyfish-Sapelo|Jellyfish]] || 2.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[MAFFT-Sapelo2|MAFFT]] || 7.273, 7.313 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[MAFFT-Sapelo2|MAFFT]] || 7.273, 7.313 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="M">[[MAFFT-Teaching|MAFFT]]  || 7.313, 7.273, 7.130|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Mageck-vispr-Sapelo|mageck-vispr]]  || 02242017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[Mageck-vispr-Sapelo|mageck-vispr]]  || 02242017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[MUMmer-Sapelo2|MUMmer]] || 3.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[MUMmer-Sapelo2|MUMmer]] || 3.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="M">[[MUMmer-Teaching|MUMmer]]  || 3.23|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MUSCLE-Sapelo|MUSCLE]] || 3.8.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[MUSCLE-Sapelo|MUSCLE]] || 3.8.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[OrthoFinder-Sapelo2|OrthoFinder]]  || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[OrthoFinder-Sapelo2|OrthoFinder]]  || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="O">[[OrthoFinder-Teaching|OrthoFinder]]  || 2.1.2|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| <span id="P"></span> [[PAGIT-Sapelo2|PAGIT]]  || 1.64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| <span id="P"></span> [[PAGIT-Sapelo2|PAGIT]]  || 1.64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[PAML-Sapelo2|PAML]]  || 4.9h || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[PAML-Sapelo2|PAML]]  || 4.9h || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="P">[[PAML-Teaching|PAML]]  || 4.9h|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[pandas-Sapelo | pandas]] || 0.16.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[pandas-Sapelo | pandas]] || 0.16.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[Perl-Sapelo2|Perl]] || 5.20.3, 5.24.0, 5.24.1, 5.26.0, 5.26.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[Perl-Sapelo2|Perl]] || 5.20.3, 5.24.0, 5.24.1, 5.26.0, 5.26.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="P">[[Perl-Teaching|Perl]]  || 5.26.1, 5.26.0, 5.24.1, 5.24.0, 5.20.3|| [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[PETSc-Sapelo|PETSc]] || 3.7.6 || [[:Category:Math_Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[PETSc-Sapelo|PETSc]] || 3.7.6 || [[:Category:Math_Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
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|-
|-
| [[picard-Sapelo2 |picard]] || 2.16.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[picard-Sapelo2 |picard]] || 2.16.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="P">[[picard-Teaching|Picard]]  || 2.16.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[picrust-Sapelo|picrust]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[picrust-Sapelo|picrust]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
Line 1,110: Line 1,157:
|-
|-
| [[Pilon-Sapelo2|Pilon]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[Pilon-Sapelo2|Pilon]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="P">[[pilon-Teaching|Pilon]]  || 1.22|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Pindel-Sapelo|Pindel]]  ||0.2.5b8|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[Pindel-Sapelo|Pindel]]  ||0.2.5b8|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
Line 1,154: Line 1,203:
|-
|-
| [[Prokka-Sapelo2|Prokka]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[Prokka-Sapelo2|Prokka]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="P">[[proovread-Teaching|Proovread]]  || 2.14.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[protobuf-Sapelo|protobuf]] || 2.4.1, 2.6.1, 3.0.0-beta1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[protobuf-Sapelo|protobuf]] || 2.4.1, 2.6.1, 3.0.0-beta1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
Line 1,179: Line 1,230:
| [[Pysam-Sapelo2 | Pysam]] || 0.10.0, 0.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[Pysam-Sapelo2 | Pysam]] || 0.10.0, 0.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[pythonlzo-Sapelo|Pythonlzo]]  || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Python-Sapelo | Python]] || 2.6.6, 2.7.8, 2.7.13, 3.5.2, 3.6.4 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[Python-Sapelo | Python]] || 2.6.6, 2.7.8, 2.7.13, 3.5.2, 3.6.4 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Python-Sapelo2 | Python]] || 2.7.12, 2.7.14, 3.4.3, 3.5.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[Python-Sapelo2 | Python]] || 2.7.12, 2.7.14, 3.4.3, 3.5.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="P">[[Python-Teaching|Python]]  || 3.6.4, 3.5.2, 2.7.14, 2.7.12|| [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[PyTorch-Sapelo|PyTorch]] || 0.1.9, 0.1.11 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[PyTorch-Sapelo|PyTorch]] || 0.1.9, 0.1.11 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
Line 1,226: Line 1,278:
|-
|-
| [[RAxML-Sapelo2 | RAxML]] || 8.2.4, 8.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[RAxML-Sapelo2 | RAxML]] || 8.2.4, 8.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="R">[[RAxML-Teaching|RAxML]]  || 8.2.11|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Ray-Sapelo | Ray]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[Ray-Sapelo | Ray]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
Line 1,254: Line 1,308:
|-
|-
| [[Repeatmasker-Sapelo2|Repeatmasker]] || 4.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[Repeatmasker-Sapelo2|Repeatmasker]] || 4.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="R">[[RepeatMasker-Teaching|RepeatMasker]]  || 4.0.7|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Repeatmodeler-Sapelo|Repeatmodeler]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[Repeatmodeler-Sapelo|Repeatmodeler]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Repeatmodeler-Sapelo2|Repeatmodeler]] || 1.0.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[Repeatmodeler-Sapelo2|Repeatmodeler]] || 1.0.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="R">[[RepeatModeler-Teaching|RepeatModeler]]  || 1.0.11|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[RepeatScout-Sapelo2|RepeatScout]]  ||1.0.5|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[RepeatScout-Sapelo2|RepeatScout]]  ||1.0.5|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="R">[[RepeatScout-Teaching|RepeatScout]]  || 1.05|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[REPET-Sapelo2|REPET]]  || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[REPET-Sapelo2|REPET]]  || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
Line 1,314: Line 1,374:
|-
|-
| [[SAMtools-Sapelo2|SAMtools]] || 0.1.19, 1.3.1, 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[SAMtools-Sapelo2|SAMtools]] || 0.1.19, 1.3.1, 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="S">[[SAMtools-Teaching|SAMtools]]  || 1.6, 1.3.1, 0.1.19|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SATé-Sapelo|SATé]] || 2.2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[SATé-Sapelo|SATé]] || 2.2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
Line 1,364: Line 1,426:
|-
|-
| [[SMRTLINK-Sapelo2|SMRTLINK]]  ||5.1.0.26412|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[SMRTLINK-Sapelo2|SMRTLINK]]  ||5.1.0.26412|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="S">[[SMRTLINK-Teaching|SMRTLINK]]  || 5.1.0.26412, 5.0.1.9585|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[snakemake-Sapelo|snakemake]] || 4.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[snakemake-Sapelo|snakemake]] || 4.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SNAP-Zoe-Sapelo2|SNAP-Zoe]] || 20060728 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[SNAP-Zoe-Sapelo2|SNAP-Zoe]] || 20060728 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="S">[[SNAP-Zoe-Teaching|SNAP-Zoe]]  || 20060728|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Sniffles-Sapelo2|Sniffles]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[Sniffles-Sapelo2|Sniffles]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
Line 1,374: Line 1,440:
|-
|-
| [[snpEff-Sapelo2|snpEff]] || 4.3t || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[snpEff-Sapelo2|snpEff]] || 4.3t || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="S">[[snpEff-Teaching|SnpEff]]  || 4.3t|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SNPhylo-Sapelo|SNPhylo]] || 20160204 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[SNPhylo-Sapelo|SNPhylo]] || 20160204 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
Line 1,386: Line 1,454:
|-
|-
| [[SOAPdenovo2-Sapelo2|SOAPdenovo2]] || r240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[SOAPdenovo2-Sapelo2|SOAPdenovo2]] || r240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="S">[[SOAPdenovo2-Teaching|SOAPdenovo2]]  || r240|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SOP-GPU-Sapelo2|SOP-GPU]] || 20180404 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[SOP-GPU-Sapelo2|SOP-GPU]] || 20180404 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
Line 1,392: Line 1,462:
|-
|-
| [[SortMeRNA-Sapelo2|SortMeRNA]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[SortMeRNA-Sapelo2|SortMeRNA]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="S">[[SPAdes-Teaching|SPAdes]]  || 3.11.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Spark-Sapelo|Spark]] || 1.6.0, 2.0.1, 2.2.1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[Spark-Sapelo|Spark]] || 1.6.0, 2.0.1, 2.2.1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
Line 1,414: Line 1,486:
|-
|-
| [[Stacks-Sapelo2|Stacks]] || 1.48 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[Stacks-Sapelo2|Stacks]] || 1.48 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="S">[[Stacks-Teaching|Stacks]]  || 2.0, 1.48|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[STAMP-Sapelo | STAMP]] || 2.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[STAMP-Sapelo | STAMP]] || 2.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
Line 1,422: Line 1,496:
|-
|-
| [[STAR-Sapelo2|STAR]] || 2.5.3a, 2.6.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[STAR-Sapelo2|STAR]] || 2.5.3a, 2.6.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="S">[[STAR-Teaching|STAR]]  || 2.6.0c, 2.5.3a|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[StringTie-Sapelo|StringTie]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[StringTie-Sapelo|StringTie]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
Line 1,484: Line 1,560:
|-
|-
| [[Tophat-Sapelo2|Tophat]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[Tophat-Sapelo2|Tophat]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="T">[[TopHat-Teaching|TopHat]]  || 2.1.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[TPP-Sapelo2|TPP]] || 5.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[TPP-Sapelo2|TPP]] || 5.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
Line 1,512: Line 1,590:
|-
|-
| [[Trinity-Sapelo2|Trinity]] || r20140717, 2.5.1, 2.6.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[Trinity-Sapelo2|Trinity]] || r20140717, 2.5.1, 2.6.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="T">[[Trinity-Teaching|Trinity]]  || 2.6.6|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Trinotate-Sapelo|Trinotate]]  || 3.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[Trinotate-Sapelo|Trinotate]]  || 3.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
Line 1,546: Line 1,626:
|-
|-
| [[vcf2phylip-Sapelo2|vcf2phylip]]  || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[vcf2phylip-Sapelo2|vcf2phylip]]  || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="V">[[VCFtools-Teaching|VCFtools]]  || 0.1.15|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[velvet-Sapelo|velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[velvet-Sapelo|velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
Line 1,551: Line 1,633:
| [[Velvet-Sapelo2|Velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[Velvet-Sapelo2|Velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[VelvetOptimiser-Sapelo|VelvetOptimiser]] || 2.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id="V">[[Velvet-Teaching|Velvet]] || 1.2.10|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[ViennaRNA-Sapelo|ViennaRNA]]  ||2.1.3|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[ViennaRNA-Sapelo|ViennaRNA]]  ||2.1.3|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]

Revision as of 13:15, 10 August 2018

Below is a partial list of software packages installed on Sapelo and Sapelo2 (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2, along with a short description, please run the following command on Sapelo2: 

module spider

You can also use the command above to search for a specific application. For more information, please see Lmod.

Installed Software List

Last updated 2018-08-10. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name Version Category Cluster
4p 1.0 Bioinformatics Sapelo Up20.png
4p 1.0 Bioinformatics Sapelo2 Up20.png
ABySS 2.0.2 Bioinformatics Sapelo Up20.png
ABySS 1.9.0, 2.0.2, 2.1.0 Bioinformatics Sapelo2 Up20.png
aeneas 1.7.3 Other Sapelo Up20.png
AFNI 17.3.05 Other Sapelo2 Up20.png
AGE 0.4 Bioinformatics Sapelo Up20.png
AlignGraph 20180709 Bioinformatics Sapelo2 Up20.png
Allmaps 0.6.6 Bioinformatics Sapelo Up20.png
AlleleSeq_pipeline 1.2a Chemistry Sapelo2 Up20.png
AMBER 14 Chemistry Sapelo Up20.png
AMBER 14 Chemistry Sapelo2 Up20.png
amos 3.1.0 Bioinformatics Sapelo Up20.png
AMOS 3.1.0 Bioinformatics Sapelo2 Up20.png
Anaconda 2.2.0, 2.5.0, 3-2.2.0, 2-4.1.1 Programming Sapelo Up20.png
Anaconda2 4.2.0, 4.3.0, 4.4.0 Programming Sapelo Up20.png
Anaconda2 5.0.1 Programming Sapelo2 Up20.png
Anaconda3 4.2.0, 4.3.0, 5.0.0 Programming Sapelo Up20.png
Anaconda3 5.0.1 Programming Sapelo2 Up20.png
ANI 2.0 Bioinformatics Sapelo Up20.png
ANNOgesic 0.6.17 Bioinformatics Sapelo Up20.png
annovar 2017Jul16 Bioinformatics sapelo2 Up20.png
ANSYS 16.2 Engineering Sapelo Up20.png
apache-ant 1.9.6 Other Sapelo Up20.png
Aragorn 1.2.38 Bioinformatics Sapelo2 Up20.png
ARC 1.1.4-beta Bioinformatics Sapelo Up20.png
Arlequin 3.5.2.2 Bioinformatics Sapelo2 Up20.png
ART 20160605 Bioinformatics Sapelo Up20.png
ART 20160605 Bioinformatics Sapelo2 Up20.png
Artemis 17.0.1 Bioinformatics Sapelo2 Up20.png
Artemis 17.0.1 Bioinformatics Teaching Up20.png
AStalavista 3.2 Bioinformatics Sapelo Up20.png
ASTRAL 5.6.1 Bioinformatics Sapelo2 Up20.png
augustus 3.2.3 Bioinformatics Sapelo Up20.png
AUGUSTUS 3.2.3 Bioinformatics Sapelo2 Up20.png
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Bamtools 2.4.0 Bioinformatics Sapelo Up20.png
BamTools 2.4.1 Bioinformatics Sapelo2 Up20.png
Barrnap 0.9 Bioinformatics Sapelo2 Up20.png
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BBMap 37.67 Bioinformatics Sapelo2 Up20.png
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BLAST+ 2.6.0 Bioinformatics Teaching Up20.png
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circlator 1.4.1 Bioinformatics Sapelo Up20.png
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FastME 2.1.5 Bioinformatics Sapelo2 Up20.png
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FastQC 0.11.5 Bioinformatics Sapelo2 Up20.png
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GBlocks 0.91b Bioinformatics Sapelo2 Up20.png
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GCTA 1.26.0 Bioinformatics Sapelo2 Up20.png
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GeneMarkES 4.33 Bioinformatics Sapelo2 Up20.png
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GeneMarkS 4.30 Bioinformatics Sapelo2 Up20.png
GeneMarkS-T 4.33 Bioinformatics Sapelo2 Up20.png
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GenomeTools 1.5.9 Bioinformatics Sapelo2 Up20.png
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gffread 0.9.12 Bioinformatics Sapelo2 Up20.png
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kallisto 0.43.1 Bioinformatics Sapelo2 Up20.png
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Migrate 3.6.11 Bioinformatics Sapelo Up20.png
minced 0.2.1 Bioinformatics Sapelo2 Up20.png
Minimac3 2.0.1 Bioinformatics Sapelo Up20.png
Minimap 0.2 Bioinformatics Sapelo Up20.png
Minimap2 2.10 Bioinformatics Sapelo2 Up20.png
miRanda aug2010 Bioinformatics Sapelo Up20.png
mirdeep-p 1.3 Bioinformatics Sapelo Up20.png
mirdeep-p 1.3 Bioinformatics Sapelo2 Up20.png
miRDeep2 0.0.9 Bioinformatics Sapelo Up20.png
miRDeep2 0.0.8 Bioinformatics Sapelo2 Up20.png
MISO 09132016 Bioinformatics Sapelo Up20.png
MITE-Hunter 11-2011 Bioinformatics Sapelo2 Up20.png
MKL 11.1, 11.2 Math Library Sapelo Up20.png
mlehot 1.8.16 Bioinformatics Sapelo Up20.png
MOABS 1.3.2 Bioinformatics Sapelo Up20.png
MOCAT 1.3r2 Bioinformatics Sapelo Up20.png
MOTHUR 1.37.5, 1.39.5 Bioinformatics Sapelo Up20.png
Mothur 1.39.5 Bioinformatics Sapelo2 Up20.png
motif 2.3.5, 2.3.8 Graphics Sapelo2 Up20.png
MP-EST 1.5 Bioinformatics Sapelo Up20.png
MPFR 3.1.2 Library Sapelo Up20.png
MPFRC++ 3.6.2 Library Sapelo Up20.png
Mplus 7.4 Statistics Sapelo Up20.png
MrBayes 3.2.6 Bioinformatics Sapelo Up20.png
MrBayes 3.2.6 Bioinformatics Sapelo2 Up20.png
MrDemuxy 1.2.0 Bioinformatics Sapelo Up20.png
MREPS 1.0.5 Bioinformatics Sapelo2 Up20.png
MSTmap 20170927 Bioinformatics Sapelo Up20.png
MultiLoc2 26-10-2009 Bioinformatics Sapelo Up20.png
MultiMappingCounter 21-09-2017 Bioinformatics Sapelo Up20.png
MultiQC 1.5 Bioinformatics Sapelo2 Up20.png
MUMmer 3.23 Bioinformatics Sapelo Up20.png
MUMmer 3.23 Bioinformatics Sapelo2 Up20.png
MUMmer 3.23 Bioinformatics Teaching Up20.png
MUSCLE 3.8.31 Bioinformatics Sapelo Up20.png
MUSCLE 3.8 Bioinformatics Sapelo2 Up20.png
MVFtools 10112017 Bioinformatics Sapelo Up20.png
MuTect 1.1.5 Bioinformatics Sapelo Up20.png
NAMD 2.11 Chemistry Sapelo Up20.png
NAMD 2.12 Chemistry Sapelo2 Up20.png
NASM 2.11, 2.12, 2.13 Other Sapelo2 Up20.png
NCBI Blast 2.2.26 Bioinformatics Sapelo Up20.png
NCBI Blast + 2.2.29 Bioinformatics Sapelo Up20.png
Ncbi_tools++ 12.0.0 Bioinformatics Sapelo Up20.png
NCBIBLAST+ 2.7.1 Bioinformatics Sapelo Up20.png
NCL 6.4.0 Other Sapelo2 Up20.png
NeEstimator 2.1 Bioinformatics Sapelo2 Up20.png
NETCDF 3.6.3, 4.1.3, 4.3.2 Library Sapelo Up20.png
Newbler 2.6 Bioinformatics Sapelo Up20.png
NextGenMap 0.5.5 Bioinformatics Sapelo2 Up20.png
ngmlr 0.2.6-beta Bioinformatics Sapelo2 Up20.png
NGS 1.3.0 Bioinformatics Sapelo2 Up20.png
NGS-QC Toolkit 2.3.3 Bioinformatics Sapelo Up20.png
Ngsutils 0.5.9 Bioinformatics Sapelo Up20.png
nhPhyML 20180515 Bioinformatics Sapelo2 Up20.png
Nseg 20180530 Bioinformatics Sapelo2 Up20.png
NucleoATAC 0.3.4 Bioinformatics Sapelo2 Up20.png
NWCHEM 6.5 Chemistry Sapelo Up20.png
NxTrim v0.3.2-alpha Bioinformatics Sapelo Up20.png
Oases 0.2.08, 0.2.09 Bioinformatics Sapelo2 Up20.png
OCaml 4.01.0, 4.02.3 Programming Sapelo2 Up20.png
Octave 4.0.3 Other, Programming, Graphics Sapelo Up20.png
Oligotyping 2.1 Bioinformatics Sapelo Up20.png
OpenBUGS 3.2.3 Statistics Sapelo Up20.png
OpenCV 2.4.13.3, 3.0 Other Sapelo Up20.png
opera 2.0.6 Bioinformatics Sapelo Up20.png
ORCA 3.0.3, 4.0.0 Chemistry Sapelo Up20.png
ORCA 3.0.3, 4.0.0.2, 4.0.1.2 Chemistry Sapelo2 Up20.png
ORGASM 0.2.03 Bioinformatics Sapelo2 Up20.png
ORGanelle_ASeMbler 0.2.03 Bioinformatics Sapelo2 Up20.png
OrthoFiller 1.1.4 Bioinformatics Sapelo Up20.png
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OrthoFinder 2.1.2 Bioinformatics Sapelo2 Up20.png
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PAGIT 1.64 Bioinformatics Sapelo2 Up20.png
palfinder 0.02.04 Bioinformatics Sapelo Up20.png
paml 4.8 Bioinformatics Sapelo Up20.png
PAML 4.9h Bioinformatics Sapelo2 Up20.png
PAML 4.9h Bioinformatics Teaching Up20.png
pandas 0.16.0 Other Sapelo Up20.png
PANDAseq 2.5 Bioinformatics Sapelo2 Up20.png
Pango 1.40.3, 1.41.1 Library Sapelo2 Up20.png
ParaFly 0.1.0 utility Sapelo Up20.png
PartitionFinder 2.1.1 Bioinformatics Sapelo2 Up20.png
PASA 2.3.3 Bioinformatics Sapelo2 Up20.png
PASTA 1.6.4 Bioinformatics Sapelo Up20.png
PASTA 1.8.2 Bioinformatics Sapelo2 Up20.png
Paup 4a147 Bioinformatics Sapelo Up20.png
PAUP 4a162_centos64_intel Bioinformatics Sapelo2 Up20.png
pbh5tools 0.8.0 Bioinformatics Sapelo2 Up20.png
PBLAT 2.0.0 Bioinformatics Sapelo2 Up20.png
PBSuite 15.8.24 Bioinformatics Sapelo Up20.png
PBSuite 15.8.24 Bioinformatics Sapelo2 Up20.png
PCRE 8.38, 8.39, 8.41 Library Sapelo2 Up20.png
Peakranger 1.18 Bioinformatics Sapelo Up20.png
PEAR 0.9.10-src Bioinformatics Sapelo Up20.png
PEAR 0.9.8 Bioinformatics Sapelo2 Up20.png
PePr 1.1.18 Bioinformatics Sapelo Up20.png
Perl 5.24.0-thread Programming Sapelo Up20.png
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Perl 5.26.1, 5.26.0, 5.24.1, 5.24.0, 5.20.3 Programming Teaching Up20.png
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PGI Compilers 2014 Compiler Sapelo Up20.png
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PhaseTank 1.0 Bioinformatics Sapelo Up20.png
PhaseTank 1.0 Bioinformatics Sapelo2 Up20.png
Phobius 1.01 Bioinformatics Sapelo2 Up20.png
Phred/Phrap/Conced Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 Bioinformatics Sapelo2 Up20.png
PHYLIP 3.697 Bioinformatics Sapelo2 Up20.png
PhyloGenie 11082017 Bioinformatics Sapelo Up20.png
Phyluce 1.6.1 Bioinformatics Sapelo2 Up20.png
PhyML 3.0 Bioinformatics Sapelo Up20.png
PhyML 3.3.20170530 Bioinformatics Sapelo2 Up20.png
PhyloBayes-MPI 1.7 Bioinformatics Sapelo Up20.png
PhyloBayes-MPI 20161021 Bioinformatics Sapelo2 Up20.png
PhyloNet 3.6.0 Bioinformatics Sapelo Up20.png
phyluce 1.5.0 Bioinformatics Sapelo Up20.png
PhyML 3.0 Bioinformatics Sapelo Up20.png
picard 2.1.1, 2.4.1 Bioinformatics Sapelo Up20.png
picard 2.16.0 Bioinformatics Sapelo2 Up20.png
Picard 2.16.0 Bioinformatics Teaching Up20.png
picrust 1.1.0 Bioinformatics Sapelo Up20.png
PICRUSt 1.1.3 Bioinformatics Sapelo2 Up20.png
pigz 2.3.4 Other Sapelo Up20.png
pigz 2.3.3 Other Sapelo2 Up20.png
PILER 2.5 Bioinformatics Sapelo2 Up20.png
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Pindel 0.2.5b8 Bioinformatics Sapelo Up20.png
pIRS 2.0.2 Bioinformatics Sapelo Up20.png
Pitchfork 09272017 Bioinformatics Sapelo Up20.png
platypus 0.8.1 Bioinformatics Sapelo Up20.png
PLEK 1.2 Bioinformatics Sapelo Up20.png
plink 1.07, 1.9-beta3 Bioinformatics Sapelo Up20.png
PLINK 1.07, 1.9b Bioinformatics Sapelo2 Up20.png
PLUMED 2.3.3 Chemistry Sapelo Up20.png
poretools 0.6.0 Bioinformatics Sapelo Up20.png
portaudio 19 Other Sapelo Up20.png
PRATT 2.1 Bioinformatics Sapelo Up20.png
prep-chem-src 1.5 Other Sapelo Up20.png
Primer3 2.0.0-alpha Bioinformatics Sapelo Up20.png
Primer3 2.3.7 Bioinformatics Sapelo2 Up20.png
PRINSEQ 0.20.4 Bioinformatics Sapelo Up20.png
PRINSEQ 0.20.4 Bioinformatics Sapelo2 Up20.png
ProbABEL 0.5.0 Bioinformatics Sapelo Up20.png
Prodigal 2.6.3 Bioinformatics Sapelo Up20.png
Prodigal 2.6.3 Bioinformatics Sapelo2 Up20.png
proovread 2.12 Bioinformatics Sapelo Up20.png
Prokka 1.11 Bioinformatics Sapelo Up20.png
Prokka 1.13 Bioinformatics Sapelo2 Up20.png
Proovread 2.14.1 Bioinformatics Teaching Up20.png
protobuf 2.4.1, 2.6.1, 3.0.0-beta1 Other Sapelo Up20.png
protobuf 3.3.0, 3.4.0 Other Sapelo2 Up20.png
Prottest3 3.4.2 Bioinformatics Sapelo Up20.png
pybedtools 09/22/2016 Bioinformatics Sapelo Up20.png
pybedtools 0.7.10 Bioinformatics Sapelo2 Up20.png
pyDNase 0.2.5 Bioinformatics Sapelo Up20.png
pydub 0.21.0 Other Sapelo Up20.png
pyfasta 0.5.2 Bioinformatics Sapelo Up20.png
PyPy 2.7-5.10.0 Programming Sapelo Up20.png
PyPy 6.0.0 (2.7.14) Programming Sapelo2 Up20.png
pyRAD 3.0.64 Bioinformatics Sapelo Up20.png
Pysam 0.10.0, 0.13 Bioinformatics Sapelo2 Up20.png
Python 2.6.6, 2.7.8, 2.7.13, 3.5.2, 3.6.4 Programming Sapelo Up20.png
Python 2.7.12, 2.7.14, 3.4.3, 3.5.1 Programming Sapelo2 Up20.png
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PyTorch 0.1.9, 0.1.11 Other Sapelo Up20.png
Qiime 1.9.1 Bioinformatics Sapelo Up20.png
QIIME2 2018.2, 2018.4, 2018.6 Bioinformatics Sapelo2 Up20.png
Quake 0.3 Bioinformatics Sapelo Up20.png
Qualimap2 2.2.1 Bioinformatics Sapelo Up20.png
Qualimap2 2.2.1 Bioinformatics Sapelo2 Up20.png
QUAST 4.5 Bioinformatics Sapelo Up20.png
QUAST 4.2, 4.6.1, 4.6.3, 5.0.0 Bioinformatics Sapelo2 Up20.png
Quantum Espresso 5.4.0 Chemistry Sapelo Up20.png
Quantum Espresso 6.2.0 Chemistry Sapelo2 Up20.png
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racon 20161214 Bioinformatics Sapelo Up20.png
racon 20180406 Bioinformatics Sapelo2 Up20.png
Randfold 2.0.1 Bioinformatics Sapelo Up20.png
randfold 2.0.1 Bioinformatics Sapelo2 Up20.png
RAPSearch2 2.23 Bioinformatics Sapelo Up20.png
RATT 10052017 Bioinformatics Sapelo Up20.png
RATT 20180710 Bioinformatics Sapelo2 Up20.png
RAxML 8.2.4 Bioinformatics Sapelo Up20.png
RAxML 8.2.4, 8.2.11 Bioinformatics Sapelo2 Up20.png
RAxML 8.2.11 Bioinformatics Teaching Up20.png
Ray 2.3.1 Bioinformatics Sapelo Up20.png
Rcorrector 1.0.2 Bioinformatics Sapelo2 Up20.png
RDPTools 2.2.0 Bioinformatics Sapelo Up20.png
READemption 0.3.7 Bioinformatics Sapelo Up20.png
RED 1.0 Bioinformatics Sapelo Up20.png
REAPR 1.0.18 Bioinformatics Sapelo Up20.png
REAPR 1.0.18 Bioinformatics Sapelo2 Up20.png
RECON 1.08 Bioinformatics Sapelo2 Up20.png
REPCLASS 1.0.1 Bioinformatics Sapelo Up20.png
repdenovo 02232017 Bioinformatics Sapelo Up20.png
RepeatExplorer 02/2015 Bioinformatics Sapelo Up20.png
RepeatExplorer-TAREAN 12/13/2016, 01/10/2017 Bioinformatics Sapelo Up20.png
Repeatmasker 4.0.5 Bioinformatics Sapelo Up20.png
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Repeatmodeler 1.0.8 Bioinformatics Sapelo Up20.png
Repeatmodeler 1.0.11 Bioinformatics Sapelo2 Up20.png
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RepeatScout 1.0.5 Bioinformatics Sapelo2 Up20.png
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REPET 2.5 Bioinformatics Sapelo2 Up20.png
RepeatScout 1.05 Bioinformatics Sapelo2 Up20.png
RES-Scanner 20170726 Bioinformatics Sapelo Up20.png
Revbayes 1.0.5 Bioinformatics Sapelo Up20.png
RGT 0.11.2 Bioinformatics Sapelo Up20.png
RMBlast 2.6.0 Bioinformatics Sapelo2 Up20.png
Rmpi 0.6-6 Programming Sapelo Up20.png
Rmpi 0.6-6 Programming Sapelo2 Up20.png
RNAmmer 1.2 Bioinformatics Sapelo Up20.png
RNAmmer 1.2 Bioinformatics Sapelo2 Up20.png
RNAple 0.2 Bioinformatics Sapelo Up20.png
Roary 3.8 Bioinformatics Sapelo Up20.png
Roary 3.12.0 Bioinformatics Sapelo2 Up20.png
Roms_tools 3.1.1 Other Sapelo Up20.png
Rosetta 2016.15.58628, 2017.26.59567 Chemistry Sapelo Up20.png
RSEM 1.2.20 Bioinformatics Sapelo Up20.png
RSEM 1.3.0 Bioinformatics Sapelo2 Up20.png
RSeQC 2.6.4 Bioinformatics Sapelo Up20.png
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runBNG 1.03 Bioinformatics Sapelo2 Up20.png
Sabre 02/03/2017 Other Sapelo Up20.png
Sage 7.4, 8.0 Other Sapelo Up20.png
Salmon 0.6.1-pre Bioinformatics Sapelo Up20.png
Salmon 0.8.2 Bioinformatics Sapelo2 Up20.png
sam2pairwise 1.0.0 Bioinformatics Sapelo Up20.png
samtools 1.3.1 1.6 Bioinformatics Sapelo Up20.png
SAMtools 0.1.19, 1.3.1, 1.6 Bioinformatics Sapelo2 Up20.png
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sbt 0.13.12, 1.0.2 Other, Programming Sapelo Up20.png
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scala 2.10.6, 2.11.7, 2.12.0-RC1, 2.12.1 Other, Programming Sapelo Up20.png
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ScaLAPACK 2.0.2 Math Library Sapelo Up20.png
scalpel 0.5.3 Bioinformatics Sapelo Up20.png
Scripture 3/20/2015 Bioinformatics Sapelo Up20.png
Seq-Gen 1.3.3 Bioinformatics Sapelo Up20.png
seqtk 1.0-r63-dirty Bioinformatics Sapelo Up20.png
seqtk 1.2 Bioinformatics Sapelo2 Up20.png
SGA 0.10.15 Bioinformatics Sapelo Up20.png
shapeit v2.r837 Bioinformatics Sapelo Up20.png
SHORE 0.9.3 Bioinformatics Sapelo Up20.png
ShortStack 3.8.5 Bioinformatics Sapelo Up20.png
sicer 1.1 Bioinformatics Sapelo Up20.png
sickle 1.33 Bioinformatics Sapelo Up20.png
SignalP 4.1f Bioinformatics Sapelo2 Up20.png
Silix 1.2.9 Bioinformatics Sapelo2 Up20.png
SInC-simulator 2017.06.06 Bioinformatics Sapelo Up20.png
SINE_Scan 1.1.1 Bioinformatics Sapelo Up20.png
slda 0.1.4 Other Sapelo Up20.png
smoke 4.5 Other Sapelo2 Up20.png
SMRTanalysis 3.0.2 Bioinformatics Sapelo Up20.png
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snakemake 4.0.0 Bioinformatics Sapelo Up20.png
SNAP-Zoe 20060728 Bioinformatics Sapelo2 Up20.png
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Sniffles 1.0.8 Bioinformatics Sapelo2 Up20.png
SNP-ML 1.3.0 Bioinformatics Sapelo2 Up20.png
snpEff 4.3t Bioinformatics Sapelo2 Up20.png
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SNPhylo 20160204 Bioinformatics Sapelo Up20.png
SNPhylo 20160204 Bioinformatics Sapelo2 Up20.png
SOAPaligner 2.21 Bioinformatics Sapelo Up20.png
SOAPaligner 2.21 Bioinformatics Sapelo2 Up20.png
SOAPdenovo2 r240 Bioinformatics Sapelo Up20.png
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SOP-GPU 20180404 Bioinformatics Sapelo2 Up20.png
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SPAdes 3.11.1 Bioinformatics Teaching Up20.png
Spark 1.6.0, 2.0.1, 2.2.1 Other Sapelo Up20.png
SPAdes 3.11.1 Bioinformatics Sapelo2 Up20.png
SPAdes 3.7.0, 3.8.0, 3.9.0, 3.10.0, 3.11.0 Bioinformatics Sapelo Up20.png
SpeedSeq 052317 Bioinformatics Sapelo Up20.png
SQUID 1.1 Bioinformatics Sapelo Up20.png
SRAToolKit 2.8.2-1 Bioinformatics Sapelo Up20.png
SRAToolKit 2.8.2-1, 2.9.1 Bioinformatics Sapelo2 Up20.png
SSPACE 2.1.1 Bioinformatics Sapelo Up20.png
SSPACE 2.1.1 Bioinformatics Sapelo2 Up20.png
stacks 1.40, 1.44, 2.0beta2, 2.0beta7 Bioinformatics Sapelo Up20.png
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STAMP 2.1.3 Bioinformatics Sapelo Up20.png
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StringTie 1.2.0 Bioinformatics Sapelo Up20.png
StringTie 1.3.3 Bioinformatics Sapelo2 Up20.png
structure 2.3.4 Bioinformatics Sapelo Up20.png
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subread 1.5.2 Bioinformatics Sapelo Up20.png
Subread 1.6.2 Bioinformatics Sapelo2 Up20.png
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SUNTANS 20180305 Other Sapelo2 Up20.png
Supernova 2.0.1 Bioinformatics Sapelo2 Up20.png
SUPPA 06122015 Bioinformatics Sapelo Up20.png
SVDetect 0.7 Bioinformatics Sapelo Up20.png
SVDetect 0.7 Bioinformatics Sapelo2 Up20.png
SVMlight 6.02 Other Sapelo Up20.png
SWIG 3.0.12 Bioinformatics Sapelo Up20.png
SWIG 3.0.12 Bioinformatics Sapelo2 Up20.png
T-Coffee 11.00.8cbe486 Bioinformatics Sapelo Up20.png
T-REX 1.0 Bioinformatics Sapelo Up20.png
Tandem Repeats Finder 4.09 Bioinformatics Sapelo Up20.png
tassel 5.2.42 Bioinformatics Sapelo Up20.png
TASSEL 5.2.44 Bioinformatics Sapelo2 Up20.png
Tbl2asn 04172018 Bioinformatics Sapelo2 Up20.png
TensorFlow 1.8.0 Other Sapelo2 Up20.png
TensorFlow-models 20180620 Other Sapelo2 Up20.png
TEPID 0.6 Bioinformatics Sapelo Up20.png
tesseract 3.04.01 Bioinformatics Sapelo Up20.png
Theano 0.8.0 Other Sapelo Up20.png
TIGRA 0.4.0 Bioinformatics Sapelo Up20.png
TMHMM 2.0c Bioinformatics Sapelo2 Up20.png
TOFU2 3.9 Bioinformatics Sapelo Up20.png
tophat 2.0.14 Bioinformatics Sapelo Up20.png
Tophat 2.1.1 Bioinformatics Sapelo2 Up20.png
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TPP 5.1.0 Bioinformatics Sapelo2 Up20.png
TransDecoder 2.0.1 Bioinformatics Sapelo Up20.png
TransDecoder 2.1.0 Bioinformatics Sapelo2 Up20.png
Transposome 0.09.7 Bioinformatics Sapelo Up20.png
TransposonPSI 08222010 Bioinformatics Sapelo Up20.png
Transrate 1.0.1 Bioinformatics Sapelo Up20.png
TreeMix 1.13 Bioinformatics Sapelo Up20.png
TrimGalore 0.4.4 Bioinformatics Sapelo Up20.png
trimmomatic 0.36 Bioinformatics Sapelo Up20.png
Trimmomatic 0.36 Bioinformatics Sapelo2 Up20.png
TrimGalore 4.0 Bioinformatics Sapelo Up20.png
Trim_Galore 0.4.5 Bioinformatics Sapelo2 Up20.png
Trinity 2.06 Bioinformatics Sapelo Up20.png
Trinity r20140717, 2.5.1, 2.6.6 Bioinformatics Sapelo2 Up20.png
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Trinotate 3.1.1 Bioinformatics Sapelo Up20.png
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TRNAscan-SE 2.0.0 Bioinformatics Sapelo Up20.png
TRNAscan-SE 2.0.0 Bioinformatics Sapelo2 Up20.png
UCHIME 4.2.40 Bioinformatics Sapelo Up20.png
usearch 10.0.240 Bioinformatics Sapelo Up20.png
UCSC 06-17-2015 Bioinformatics Sapelo Up20.png
ucsc 359 Bioinformatics Sapelo2 Up20.png
UPP 3.2 Other Sapelo2 Up20.png
VarScan 2.4.2 Bioinformatics Sapelo2 Up20.png
VCF-kit 0.1.6 Bioinformatics Sapelo2 Up20.png
vcflib 1.0.0-rc1 Bioinformatics Sapelo Up20.png
vcflib 20180410 Bioinformatics Sapelo2 Up20.png
vcftools 0.1.12b Bioinformatics Sapelo Up20.png
VCFtools 0.1.15 Bioinformatics Sapelo2 Up20.png
vcf2diploid 0.2.6a Chemistry Sapelo2 Up20.png
vcf2phylip 1.5 Bioinformatics Sapelo2 Up20.png
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velvet 1.2.10 Bioinformatics Sapelo Up20.png
Velvet 1.2.10 Bioinformatics Sapelo2 Up20.png
Velvet 1.2.10 Bioinformatics Teaching Up20.png
ViennaRNA 2.1.3 Bioinformatics Sapelo Up20.png
ViennaRNA 2.4.3, 2.4.6 Bioinformatics Sapelo2 Up20.png
viromescan 05292017 Bioinformatics Sapelo Up20.png
Vmatch 2.3.0 Bioinformatics Sapelo2 Up20.png
voxnet 0.1 Other Sapelo Up20.png
vsearch 1.10.1 Bioinformatics Sapelo Up20.png
VSEARCH 2.8.1 Bioinformatics Sapelo2 Up20.png
wgs 8.2 Bioinformatics Sapelo Up20.png
whatshap 0.12 Bioinformatics Sapelo Up20.png
WinHap 2.0 Bioinformatics Sapelo Up20.png
WPS 3.6, 3.6.1, 3.7, 3.8 Other Sapelo Up20.png
WPS 3.8 Other Sapelo2 Up20.png
WRF 3.6, 3.6.1, 3.7, 3.8 Other Sapelo Up20.png
WRF 3.6.1, 3.8.0 Other Sapelo2 Up20.png
WRF-Chem 3.6.1, 3.8 Other Sapelo Up20.png
WRF-Chem 3.6.1, 3.8.0 Other Sapelo2 Up20.png
WRF-Fire 20170221 Other Sapelo2 Up20.png
WU Blast 2.2.6 Bioinformatics Sapelo Up20.png
WU Blast 2.2.6 Bioinformatics Sapelo2 Up20.png
Xander_assembler 7/12/2016 Bioinformatics Sapelo Up20.png
xforms 1.2.4 Graphics Sapelo2 Up20.png
YAHA 0.1.83 Bioinformatics Sapelo Up20.png
YASRA 2.33 Bioinformatics Sapelo Up20.png
YASRA 2.33 Bioinformatics Sapelo2 Up20.png
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