Software2: Difference between revisions
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| [[SAMtools-Teaching|SAMtools]] ||0.1.19 1.6 1.3.1 1.3.1 0.1.19, 1.6, 1.3.1, 1.3.1, 0.1.19|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | | [[SAMtools-Teaching|SAMtools]] ||0.1.19 1.6 1.3.1 1.3.1 0.1.19, 1.6, 1.3.1, 1.3.1, 0.1.19|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[Stacks-Teaching|Stacks]] ||1.48 2.0 1.48, 2.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | | [[Stacks-Teaching|Stacks]] ||1.48 2.0 1.48, 2.0, 1.48|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[STAR-Teaching|STAR]] ||2.5.3a 2.6.0c 2.5.3a|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | | [[STAR-Teaching|STAR]] ||2.5.3a 2.6.0c 2.5.3a|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
Revision as of 15:41, 6 August 2018
Installed Software List
Last updated 2018-08-06. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
| Name | Version | Category | Cluster | |
|---|---|---|---|---|
| AUGUSTUS | 3.2.3 | Bioinformatics | Teaching | 
|
| BCFtools | 1.3.1 1.8 1.6 1.3.1, 1.8, 1.6, 1.3.1 | Bioinformatics | Teaching |
|
| BEDTools | 2.26.0 | Bioinformatics | Teaching |
|
| Biopython | 1.68 1.68 1.68, 1.68, 1.68 | Bioinformatics | Teaching |
|
| BLAST | 2.2.26 | Bioinformatics | Teaching |
|
| Bowtie2 | 2.2.3 2.3.4.1 2.3.3 2.2.3, 2.3.4.1, 2.3.3, 2.2.3 | Bioinformatics | Teaching |
|
| BWA | 0.7.15 0.7.17 0.7.15, 0.7.17, 0.7.15 | Bioinformatics | Teaching |
|
| Canu | 1.4 1.7 1.6 1.5 1.4, 1.7, 1.6, 1.5, 1.4 | Bioinformatics | Teaching |
|
| GATK | 3.4-0 3.8-0 3.4-0, 3.8-0, 3.4-0 | Bioinformatics | Teaching |
|
| Java | 1.8.0_92 1.8.0_144 1.8.0_141 1.8.0_121 1.8.0_112 1.8.0_92, 1.8.0_144, 1.8.0_141, 1.8.0_121, 1.8.0_112, 1.8.0_92 | Other | Teaching |
|
| MAFFT | 7.130 7.313 7.273 7.130, 7.313, 7.273, 7.130 | Bioinformatics | Teaching |
|
| Perl | 5.20.3 5.26.1 5.26.1 5.26.0 5.24.1 5.24.0 5.20.3, 5.26.1, 5.26.1, 5.26.0, 5.24.1, 5.24.0, 5.20.3 | Other | Teaching |
|
| Python | 2.7.12 3.6.4 3.5.2 2.7.14 2.7.14 2.7.14 2.7.14 2.7.14 2.7.12, 3.6.4, 3.5.2, 2.7.14, 2.7.14, 2.7.14, 2.7.14, 2.7.14, 2.7.12 | Other | Teaching |
|
| Qiime | 1.9.1 | Bioinformatics | Sapelo |
|
| RAxML | 8.2.11 8.2.11 8.2.11, 8.2.11, 8.2.11 | Bioinformatics | Teaching |
|
| SAMtools | 0.1.19 1.6 1.3.1 1.3.1 0.1.19, 1.6, 1.3.1, 1.3.1, 0.1.19 | Bioinformatics | Teaching |
|
| Stacks | 1.48 2.0 1.48, 2.0, 1.48 | Bioinformatics | Teaching |
|
| STAR | 2.5.3a 2.6.0c 2.5.3a | Bioinformatics | Teaching |
|
| SWIG | 3.0.2 | Programming | Zcluster |
|
| T-Coffee | 11.00.8cbe486 | Bioinformatics | Sapelo |
|
| T-REX | 1.0 | Bioinformatics | Sapelo |
|
| tabix | 0.2.5 | Bioinformatics | Zcluster |
|
| Zbar | 0.10 | Graphics | Sapelo |
|
| zlib | 1.2.5, 1.2.8 | Library | Sapelo |
|
| Zorro | 2.2 | Bioinformatics | Zcluster |
|