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(Created page with "Category:Sapelo2Category:Software[[Category:<!-- CATEGORY3 BEGIN --> Bioinformatics <!-- CATEGORY3 END -->]] === Category === <!-- CATEGORY3 BEGIN --> Bioinformatics ...") |
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Also refer to [[Running Jobs on Sapelo2]] | Also refer to [[Running Jobs on Sapelo2]] | ||
Also refer to [[Running_Jobs_on_Sapelo2#Running_an_X-windows_application | Run X window Jobs]] and | Also refer to [[Running_Jobs_on_Sapelo2#Running_an_X-windows_application | Run X window Jobs]] and | ||
[[ | [[Running_Jobs_on_Sapelo2#Running_an_Interactive_Job | Run interactive Jobs]] | ||
The last version is at /usr/local/apps/gb/<!-- LC_NAME BEGIN -->trinity<!-- LC_NAME END -->/<!-- VERSION BEGIN -->2.0.6<!-- VERSION END --> | |||
Here is an example of a shell script sub.sh to run on at the batch queue: | |||
<pre class="gscript"> | <pre class="gscript"> | ||
#!/bin/bash | #!/bin/bash | ||
| Line 42: | Line 41: | ||
</pre> | </pre> | ||
Here is an example of job submission | |||
<pre class="gcommand"> | <pre class="gcommand"> | ||
qsub ./sub.sh | qsub ./sub.sh | ||
Revision as of 11:05, 19 March 2018
Category
Bioinformatics
Program On
Sapelo2
Version
2.0.6
Author / Distributor
Trinity
Description
"" More details are at Trinity
Running Program
Also refer to Running Jobs on Sapelo2 Also refer to Run X window Jobs and Run interactive Jobs
The last version is at /usr/local/apps/gb/trinity/2.0.6
Here is an example of a shell script sub.sh to run on at the batch queue:
#!/bin/bash #PBS -N j_<!-- NAME BEGIN -->trinity<!-- NAME END --> #PBS -q batch #PBS -l nodes=1:ppn=1:AMD #PBS -l walltime=480:00:00 #PBS -l mem=10gb cd $PBS_O_WORKDIR <!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END --> [options] 1>job.out 2>job.err
Here is an example of job submission
qsub ./sub.sh
Documentation
<!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END -->
Installation
source code from Trinity
System
64-bit Linux