|
|
Line 1: |
Line 1: |
| | |
| | Below is a partial list of software packages installed on Sapelo2, Teaching (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2/Teaching, along with a short description, please run the following command on Sapelo2/Teaching: |
| | <pre class="gcommand"> |
| | module spider |
| | </pre> |
| | You can also use the command above to search for a specific application. For more information, please see [[Lmod]]. |
| | |
| | '''Note:''' Although we have not made individual software pages for the applications installed on on the Slurm test cluster (Sap2test), there are currently over 550 software packages installed there. For information on software installed there, please see [[Software on sap2test]]. |
| | |
| | |
| ==Installed Software List== | | ==Installed Software List== |
| Last updated '''{{REVISIONYEAR}}-{{REVISIONMONTH}}-{{REVISIONDAY2}}'''. | | Last updated '''{{REVISIONYEAR}}-{{REVISIONMONTH}}-{{REVISIONDAY2}}'''. |
Line 9: |
Line 19: |
| ! scope="col" width="160px"| Category | | ! scope="col" width="160px"| Category |
| ! scope="col" width="60px"| Cluster | | ! scope="col" width="60px"| Cluster |
| ! scope="col" width="20px"| | | ! scope="col" width="20px"| Top |
| |- | | |- |
| <!--LIST BEGIN--> | | <!--LIST BEGIN--> |
| | [[aaarf]] || 1.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- |
| | | <span id ="0"></span>[[3D-DNA-sapelo2 |3D-DNA]] || 180922 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ABINIT]] || 6.12.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[3SEQ-Sapelo2 |3SEQ]] || 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ABySS-Sapelo|ABySS]] || 1.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[4p-Sapelo2 |4p]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ABySS]] || 1.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="A"></span>[[ABySS-Sapelo2|ABySS]] || 1.9.0, 2.0.2, 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ACT]] || 03/27/2013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[ADMIXTURE-Sapelo2|ADMIXTURE]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ADMIXTOOLS]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[aeneas-Sapelo2|aeneas]] || 1.7.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Admixture]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[AFNI-Sapelo2|AFNI]] || 17.3.05 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[aeneas-Sapelo|aeneas]] || 1.7.3 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[AGAT-Sapelo2|AGAT]] || 0.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[AFNI]] || 2013.04.26 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[AGEnt-Sapelo2|AGEnt]] || 0.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[AGE-Sapelo|AGE]] || 0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[AIM-HII-Sapelo2|AIM-HII]] || 0.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Allmaps-Sapelo|Allmaps]] || 0.6.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[albacore-Sapelo2|Albacore]] || 2.3.4-cp35 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ALLPATHS-LG]] || 47907 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[AlignGraph-Sapelo2|AlignGraph]] || 20180709 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[AMBER-Sapelo|AMBER]] || 14 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[AlleleSeq_pipeline-Sapelo2|AlleleSeq_pipeline]] || 1.2a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[AMBER]] || 11, 12, 14 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[ALLHiC-Sapelo2|ALLHiC]] || 0.8.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[amos]] || 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Allim-Sapelo2|Allim]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[AmpliconNoise]] || 1.25 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[ALLMAPS-Sapelo2|ALLMAPS]] || 20190208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Anaconda-Sapelo|Anaconda]] || 2.2.0, 2.5.0, 3-2.2.0, 2-4.1.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[AMBER-Sapelo2|AMBER]] || 14, 16, 18 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | <!-- | [[AMBER-Teaching|AMBER]] || 14 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | <!-- |
| | | [[AMOS-Sapelo2|AMOS]] || 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Anaconda]] || 2.3.0, 2.5.0, 3-2.2.0 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Anaconda2-Sapelo2|Anaconda2]] || 5.0.1, 2018.12, 2019.03 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Anaconda2-Sapelo|Anaconda2]] || 4.2.0, 4.3.0, 4.4.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Anaconda3-Sapelo2|Anaconda3]] || 5.0.1, 2018.12, 2019.03 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Anaconda3-Sapelo|Anaconda3]] || 4.2.0, 4.3.0, 5.0.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[ANGEL-Sapelo2|ANGEL]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Anduril]] || 1.2.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[annovar-Sapelo2|annovar]] || 2017Jul16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ANI-Sapelo|ANI]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[ANSYS-Sapelo2|ANSYS]] || 18.2, 19.2 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ANNOgesic-Sapelo|ANNOgesic]] || 0.6.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[antiSMASH-Sapelo2|antiSMASH]] || 4.2.0, 5.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ANNOVAR]] || 2015Mar22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[anvi'o-Sapelo2|anvi'o]] || 4, 5.1, 5.3, 5.4, 6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ANSYS-Sapelo|ANSYS]] || 16.2 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Apollo-Sapelo2|Apollo]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Apache-ant-Sapelo|apache-ant]] || 1.9.6 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Aragorn-Sapelo2|Aragorn]] || 1.2.38 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ARB]] || 6.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Arlequin-Sapelo2|Arlequin]] || 3.5.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ARC-Sapelo|ARC]] ||1.1.4-beta|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[ART-Sapelo2|ART]] || 20160605 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Arlequin]] || 3.5.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[ARCS-Sapelo2|ARCS]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ART-Sapelo|ART]] || 20160605 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Artemis-Sapelo2|Artemis]] || 17.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Aspera]] || 3.1.0.67054 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | --> |
| | <!-- | [[Artemis-Teaching|Artemis]] || 17.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | <!-- |
| | | [[ASTRAL-Sapelo2|ASTRAL]] || 5.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[AStalavista-Sapelo|AStalavista]] || 3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[ATK-Sapelo2|ATk]] || 2.22.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Atlas2]] || 1.4.3 r158 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[ATLAS-Sapelo2|ATLAS]] || 3.10.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Augustus-Sapelo|augustus]] || 3.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[AUGUSTUS-Sapelo2|AUGUSTUS]] || 3.2.3, 3.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | <!-- | [[AUGUSTUS-Teaching|AUGUSTUS]] || 3.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | <!-- |
| | | [[AutoVOT-Sapelo2|AutoVOT]] || 0.93 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[AUGUSTUS]] || 3.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="B"></span> [[bam2fastx-Sapelo2|bam2fastx]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| | |- |
| | | [[BamTools-Sapelo2|BamTools]] || 2.4.1, 2.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | <span id="B"></span>[[BAGEL-Sapelo|BAGEL]] || 2016.12.14, 2017.02.13 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Barrnap-Sapelo2|Barrnap]] || 0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BaitsTools-Sapelo|BaitsTools]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[basespace-cli-Sapelo2|basespace-cli]] || 0.9.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[bam-readcount-Sapelo|bam-readcount]] || 0.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Basset-Sapelo2|Basset]] || 20200107 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BamBam]] || 1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[BayesAss-Sapelo2|BayesAss]] || 3.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[bam2fastq]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[BayeScan-Sapelo2|BayeScan]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Bamtools-Sapelo|Bamtools]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[bax2bam-Sapelo2|bax2bam]] || 0.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BamTools-Sapelo2|BamTools]] || 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[Bazel-Sapelo2|Bazel]] || 0.8.1, 0.11.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Banjo]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[BBMap-Sapelo2 |BBMap]] || 37.67, 38.73 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[basespace-cli-Sapelo|basespace-cli]] || 0.8.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[BCFtools-Sapelo2|BCFtools]] || 1.1, 1.3.1, 1.6, 1.8, 1.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Batchsub]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | --> |
| | <!-- | [[BCFtools-Teaching|BCFtools]] || 1.3.1, 1.6, 1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | <!-- |
| | | [[bcgTree-Sapelo2|bcgTree]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BayeScan]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[bcl2fastq-Sapelo2|bcl2fastq]] || 2.20.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Bazel-Sapelo|Bazel]] || 0.4.5 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Beast-Sapelo2|Beast]] || 1.8.4, 1.10.1, 1.10.3, 1.10.4, 2.4.8pre, 2.4.8, 2.5.0, 2.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BBMap-Sapelo | BBMap]] || 35.82 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[BEDOPS-Sapelo2|BEDOPS]] || 2.4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BBMap-Sapelo2 | BBMap]] || 37.67 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[BEDTools-Sapelo2|BEDTools]] || 2.17.0, 2.26.0, 2.28.0, 2.29.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | <!-- | [[BEDTools-Teaching|BEDTools]] || 2.26.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | <!-- |
| | | [[BerkeleyGW-Sapelo2|BerkeleyGW]] || 2.1 || [[:Category:Physics|Physics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BBMap]] || 35.66 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Bioawk-Sapelo2|bioawk]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[bcl2fastq-Sapelo|bcl2fastq]] || 2.17.1.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[BioKanga-Sapelo2|BioKanga]] || 21.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[bcl2fastq]] || 1.8.4, 2.16.0.10, 2.17.1.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Biom-format-Sapelo2|Biom-format]] || 2.1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[bcl2fastq-brwnj]] || 10262015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[BionanoSolve-Sapelo2|BionanoSolve]] || 3.2.1-04122018, 3.2.2-08222018 3.3-10252018, 3.4-06042019 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BEAST-Sapelo|BEAST]] || 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[BioPerl-Sapelo2|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | <!-- | [[BioPerl-Teaching|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- |
| | | [[BioPython-Sapelo2|BioPython]] || 1.68 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Biopython-Teaching|Biopython]] || 1.75 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Beast-Sapelo2|Beast]] || 2.4.8pre || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | <!-- |
| | | [[Bismark-Sapelo2|Bismark]] || 0.20.0, 0.22.1, 0.22.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | <!-- | [[Bismark-Teaching|Bismark]] || 0.22.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | <!-- |
| | | [[Bison-Sapelo2|Bison]] || 2.7, 3.0.2, 3.0.4 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BEAST]] || 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[BLASR-Sapelo2|BLASR]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BEDops-Sapelo|BEDops]] || 2.4.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[BLAST+-Sapelo2|BLAST+]] || 2.2.31, 2.6.0, 2.7.1, 2.9.0, 2.10.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[BLAST+-Teaching|BLAST+]] || 2.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- |
| | <!-- |
| | | [[BLAST-Sapelo2|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[BLAST-Teaching|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BEDops]] || 2.4.20 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[BLAT-Sapelo2|BLAT]] || 3.4, 3.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BEDTools-Sapelo|BEDTools]] || 2.24.0, 2.25.0 2.26.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[BlobTools-Sapelo2|BlobTools]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BEDTools-Sapelo2|BEDTools]] || 2.26.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[Blosc-Sapelo2|Blosc]] || 1.12.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BEDTools]] || 2.24.0, 2.25.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[BOLT-LMM-Sapelo2|BOLT-LMM]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BLAST+-Sapelo2|BLAST+]] || 2.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[Boost-Sapelo2|Boost]] || 1.54.0, 1.61.0, 1.63.0, 1.65.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BLAST-Sapelo2|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[Boto3-Sapelo2|Boto3]] || 1.9.14 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BEST-Sapelo|BEST]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[bowtie2-Sapelo2|bowtie2]] || 2.2.3, 2.3.3, 2.3.4.1, 2.3.4.2, 2.3.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BEST]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Bowtie2-Teaching|Bowtie2]] || 2.3.5.1, 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[bfast]] || 0.7.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Bowtie-Sapelo2|Bowtie]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BiBench-Sapelo|BiBench]] || 0.2 || [[:Category:Bioinformatics|Bioinformatics] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Bracken-Sapelo2|Bracken]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[bppsuite|Bio++ Program Suite]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[braker-Sapelo2|braker]] || 2.0.5, 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Bioawk-Sapelo|bioawk]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[BreakDancer-Sapelo2|BreakDancer]] || 1.4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Bioconductor]] || 2.11, 2.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[breseq-Sapelo2|breseq]] || 0.34.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BioPerl-Sapelo|BioPerl]] || 1.6.923 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[BS-Seeker2-Sapelo2|BS-Seeker2]] || 2.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BioPerl-Sapelo2|BioPerl]] || 1.7.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[BUSCO-Sapelo2|BUSCO]] || 2.0, 3.0.2, 4.0.5, 4.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BioPerl]] || 1.61 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[BUSCO-Sap2test|BUSCO]] || 4.0.5, 4.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sap2test|Sap2test]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[biopy]] || 0.1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[BUSCO-Teaching|BUSCO]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[BWA-Sapelo2|BWA]] || 0.7.15, 0.7.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BioPython-Sapelo|BioPython]] || 1.66 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[BWA-Teaching|BWA]] || 0.7.17, 0.7.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | <span id ="C"></span>[[Caffe-Sapelo2|Caffe]] || 04082018 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BioPython-Sapelo2|BioPython]] || 1.68 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[cactus-Sapelo2|cactus]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BioPython]] || 1.64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[cairo-Sapelo2|cairo]] || 1.14.6, 1.14.10, 1.14.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[biotoolbox]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Canu-Sapelo2|Canu]] || 1.7, 1.7.1, 1.8, 1.9, 2.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Bismark-Sapelo|Bismark]] || 0.16.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[canu-Teaching|Canu]] || 1.4, 1.5, 1.6, 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[CAP-miRSeq-Sapelo2|CAP-miRSeq]] || 05/20184 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Bismark Bisulfite Mapper]] || 0.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[CAP3-Sapelo2|CAP3]] || 03092015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BiSS]] || 0.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[cBar-Sapelo2|cBar]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BLAS]] || 3.0 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[CD-HIT-Sapelo2|CD-HIT]] || 4.6.1-2012-08-27, 4.6.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BLASR]] || 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[cDNA_Cupcake-Sapelo2|CDNA_Cupcake]] || 5.9, 7.2, 8.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Blast2lca-Sapelo|Blast2lca]] || 0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[CDO-Sapelo2|CDO]] || 1.9.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Blat-Sapelo|Blat]] || 36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[CellProfiler-Sapelo2|CellProfiler]] || 3.1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Blat]] || 3.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Cellrange-Sapelo2|Cellrange]] || 3.0.1, 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BMGE]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[CENSOR-Sapelo2|CENSOR]] || 4.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Boost-Sapelo|Boost]] || 1.47.0, 1.57.0, 1.59.0 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[CFITSIO-Sapelo2|CFITSIO]] || 3.38 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Boost]] || 1.54.0 || [[:Category:Library|Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[CFOUR-Sapelo2|CFOUR]] || 1.2, 2.00-beta, 2.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[bowtie-Sapelo|bowtie]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[CGAL-Sapelo2|CGAL]] || 4.11 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[bowtie]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Cgmaptools-Sapelo2|Cgmaptools]] || 0.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[bowtie2-Sapelo|bowtie2]] || 2.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Cgview_comparison_tool-Sapelo2|Cgview_comparison_tool]] || 2017.09.19 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[bowtie2-Sapelo2|bowtie2]] || 2.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[CheckM-Sapelo2|CheckM]] || 1.0.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[bowtie2]] || 2.2.3, 2.2.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Chimera-Sapelo2|Chimera]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BP&P]] || 2.2, 3, 3.1, 3.2|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Chimera-Teaching|Chimera]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Chromosomer-Sapelo2|Chromosomer]] || 0.1.3, 0.1.4a0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[breakdancer-Sapelo|breakdancer]] || 1.1.2_2013_03_08 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Chromosomer-Teaching|Chromosomer]] || 0.1.4a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[circlator-Sapelo2|circlator]] || 1.5.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | | [[Circos-Sapelo2|Circos]] || 0.69-6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BreakDancer-Sapelo2|BreakDancer]] || 1.4.5-foss-2016b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[Cleaveland4-Sapelo2|Cleaveland4]] || 4.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[breakdancer]] || 1.1.2_2013_03_08 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Click-Sapelo2|Click]] || 7.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[bridger]] || 2014-12-01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[ClonalFrameML-Sapelo2|ClonalFrameML]] || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[brownie]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[ClonalOrigin-Sapelo2|ClonalOrigin]] || 0.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BS Seeker]] || Dec 113 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Clust-Sapelo2|Clust]] || 1.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BS Seeker2-Sapelo|BS Seeker2]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[ClustAGE-Sapelo2|ClustAGE]] || 0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BS Seeker2]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Clustal-Omega-Sapelo2|Clustal-Omega]] || 1.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BUCKy]] || 1.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[ClustalW2-Sapelo2|ClustalW2]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[BUSCO-Sapelo| BUSCO]] ||3.0.2|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[CMake-Sapelo2|CMake]] || 3.0.0, 3.4.3, 3.5.2, 3.6.1, 3.6.2, 3.7.2, 3.8.0, 3.9.1, 3.9.5, 3.10.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[bwa-Sapelo| Burrows-Wheeler Aligner (BWA)]] || 0.7.10, 0.7.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[CNIT-Sapelo2|CNIT]] || 2020-05-13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Burrows-Wheeler Aligner (BWA)]] || 0.7.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[CNVnator-Sapelo2|CNVnator]] || 0.3.3, 0.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[bx-python]] || 06/24/2013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Cogent-Sapelo2|Cogent]] || 3.5, 3.9, 6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | <span id="C"></span>[[cadaver]] || 0.23.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Coinfinder-Sapelo2|Coinfinder]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Cafe]] || 3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[CONCOCT-Sapelo2|CONCOCT]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Caffe-Sapelo|Caffe]] || 12.04.2015|| [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Consed-Sapelo2|Consed]] || 29.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Caffe]] || 11.26.2014|| [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[cooler-Sapelo2|cooler]] || 0.8.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Cairo-Sapelo|Cairo]] || 1.10.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[CPLEX-Sapelo2|CPLEX]] || 12.6.3 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[canu-Sapelo|canu]] || 1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[crest-Sapelo2|crest]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Canu]] || 1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[CRISPResso-Sapelo2|CRISPResso]] || 1.0.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CAP-miRSeq]] || 01/2014 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[CUDA-Sapelo2|CUDA]] || 7.0.28, 7.5.18, 8.0.61, 8.0.61_375.26-GCC-5.4.0-2.26, 9.0.176, 9.1.85, 9.2.88, 10.0.130, 10.1.243 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cap3-Sapelo|cap3]] || 03/09/2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[cuDNN-Sapelo2|cuDNN]] || 7.0.4, 7.2.1.38, 7.4.2.24 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cap3]] || 10/2011 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Cufflinks-Sapelo2|Cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[casava]] || 1.8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Cufflinks-Teaching|Cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[cURL-Sapelo2|cURL]] || 7.49.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cblas]] || 3.0 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[cutadapt-Sapelo2|cutadapt]] || 1.9.1, 1.14, 1.16, 2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cd-hit-Sapelo|cdhit]] || 4.6.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Cython-Sapelo2|Cython]] || 0.27.3, 0.28.5 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cd-hit]] || 4.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[CythonGSL-Sapelo2|CythonGSL]] || 0.2.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cdbfasta]] || 04282012 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Cytoscape-Sapelo2|Cytoscape]] || 3.7.2, 3.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cdbtools]] || 06172013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Cytoscape-Teaching|Cytoscape]] || 3.7.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- |
| | | <span id ="D"></span>[[Dadi-Sapelo2|Dadi]] || 1.7.0, 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cDNA_Cupcake-Sapelo|CDNA_Cupcake]] ||3.9|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Danpos2-Sapelo2|Danpos2]] || 2.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CEAS]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Darknet-Sapelo2|Darknet]] || 3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CEGMA]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[DAS_Tool-Sapelo2|DAS_Tool]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[celera]] || 8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[datamash-Sapelo2|datamash]] || 1.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CellProfiler-Sapelo|CellProfiler]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[DBG2OLC-Sapelo2|DBG2OLC]] || 20170208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[censor-Sapelo|censor]] || 4.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[DBG2OLC-Teaching|DBG2OLC]] || 20170208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[DDocent-Sapelo2|DDocent]] || 2.7.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Centrifuge-Sapelo|Centrifuge]] || 2.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[DDSCAT-Sapelo2|DDSCAT]] || 7.3.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CFOUR-Sapelo|CFOUR]] || 1.2, 2.00-beta || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[decontaMiner-Sapelo2|decontaMiner]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CFOUR]] || beta, 1.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[deepTools-Sapelo2|deepTools]] || 3.0.2, 3.2.1, 3.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CGAT-Sapelo|CGAT]] || 0.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[DeepVariant-Sapelo2|DeepVariant]] || 0.7.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CGmapTools-Sapelo|CGmapTools]] || 0.0.3b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Delft3d-Sapelo2|Delft3d]] || 20190610 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CheckM-Sapelo|CheckM]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[delineate-Sapelo2|delineate]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CheckM]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[DendroPy-Sapelo2|DendroPy]] || 4.3.0, 4.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Check-Sapelo|Check]] || 0.10.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[detectMITE-Sapelo2|detectMITE]] || 20170425 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ChromHMM]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[detonate-Sapelo2|detonate]] || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Chromosomer-Sapelo|Chromosomer]] || 0.1.4a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[DIAMOND-Sapelo2|DIAMOND]] || 0.8.31, 0.9.19, 0.9.22, 0.9.24, 0.9.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CIRCexplorer2-Sapelo|CIRCexplorer2]] || 2.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[DIAMOND-Teaching|DIAMOND]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[DISCOVARdenovo-Sapelo2|DISCOVARdenovo]] || 52488 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[circlator-Sapelo|circlator]] || 1.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[DIYABC-Sapelo2|DIYABC]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[circoletto]] || 21.10.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[DiscoVista-Sapelo2|DiscoVista]] || 20190429 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[circos-Sapelo|circos]] || 0.69|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Distruct-Sapelo2|Distruct]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Circos-Sapelo2|Circos]] || 0.69-6|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[DLCpar-Sapelo2|DLCpar]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[circos]] || 0.64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Domainoid-Sapelo2|Domainoid]] || 20200127 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cisa-Sapelo|cisa]] || 20140304|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Doxygen-Sapelo2|Doxygen]] || 1.8.7, 1.8.11, 1.8.13 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cisgenome]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[dRep-Sapelo2|dRep]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CLAPACK]] || 3.2.1 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[DSSP-Sapelo2|DSSP]] || 3.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Cleaveland4-Sapelo|cleaveland4]] || 4.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[DyNet-Sapelo2|DyNet]] || 2.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CLUMPP]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[DyNet-Teaching|DyNet]] || 2.0.3 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | <span id ="E"></span>[[EDGE-pro-Sapelo2|EDGE-pro]] || 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Clustal-Omega]] || 1.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[eggNOG-Mapper-Sapelo2|EggNOG-Mapper]] || 1.0.3, 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | | [[Eigen-Sapelo2|Eigen]] || 3.2.3, 3.3.5 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ClustalW-Sapelo|ClustalW]] || 1.83 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[EIGENSOFT-Sapelo2|EIGENSOFT]] || 6.1.4, 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ClustalW2-Sapelo2|ClustalW2]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[EIGENSOFT-Teaching|EIGENSOFT]] || 6.1.4, 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[EMBOSS-Sapelo2|EMBOSS]] || 6.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ClustalW]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[EMBOSS-Teaching|EMBOSS]] || 6.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[EMMAX-Sapelo2|EMMAX beta]] || beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CLUSTER]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Ensembl-VEP-Sapelo2|Ensembl-VEP]] || 20180914 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[clusteringConsensus-Sapelo|clusteringConsensus]] || 1.02|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[EnTAP-Sapelo2|EnTAP]] || 0.8.4 beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cmake-Sapelo|cmake]] || 2.8.12.2, 3.0.2, 3.7.2, 3.9.3|| [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[epic2-Sapelo2|epic2]] || 0.0.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CMake-Sapelo2|CMake]] || 3.8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[EricScript-Sapelo2|EricScript]] || 0.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Cnv-seq-Sapelo|cnv-seq]] || 03132017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[ESMF-Sapelo2|ESMF]] || 7.0.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CNVnator-Sapelo|CNVnator]] || 0.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[eSpeak-Sapelo2|eSpeak]] || 1.48.04 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CNVnator-Sapelo2|CNVnator]] || 0.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[ete-Sapelo2|Ete]] || 3.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CNVnator]] || 0.2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[EVcouplings-Sapelo2|EVcouplings]] || 0.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cnv-seq]] || 0.2-7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[EVidenceModeler-Sapelo2|EVidenceModeler]] || 0.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Coding Potential Calculator]] || 0.9-r2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Exonerate-Sapelo2 |Exonerate]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CoMap]] || 1.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Exonerate-Teaching|Exonerate]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | <span id ="F"></span>[[FALCON-Sapelo2|FALCON]] || 02282018_unzip || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Conclustador]] || 0.4a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Fast-Plast-Sapelo2|Fast-Plast]] || 1.2.6, 1.2.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Genome | Consed]] || 28.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[FASTA-Sapelo2|FASTA]] || 36.3.5e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CONSEL-Sapelo|CONSEL]] || 0.20 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[fast-GeP-Sapelo2|fast-GeP]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CONSEL]] || v0.20 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[FastME-Sapelo2|FastME]] || 2.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Conspred-Sapelo|Conspred]] || v1.32 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[FastQC-Sapelo2|FastQC]] || 0.11.5,0.11.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CORMA]] || 5.21 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[FastQValidator-Sapelo2|FastQValidator]] || 0.1.1a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cortex_con]] || 0.04c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[FastQ_Screen-Sapelo2|FastQ_Screen]] || 0.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cortex_var-Sapelo|cortex_var]] || 1.0.5.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[fastSTRUCTURE-Sapelo2|FastSTRUCTURE]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cortex_var]] || 1.0.5.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[FastTree-Sapelo2 |FastTree]] || 2.1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Count]] || 2010-04-02 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[FastViromeExplorer-Sapelo2|FastViromeExplorer]] || 20180918 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CPLEX-Sapelo|CPLEX]] || 12.6.3 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[FASTX-Toolkit-Sapelo2|FASTX-Toolkit]] || 0.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CRB-BLAST]] || 0.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[FFmpeg-Sapelo2|FFmpeg]] || 3.1.3, 3.4.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CREST]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[FFTW-Sapelo2|FFTW]] || 3.3.4, 3.3.6, 3.3.7 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Croco_tools-Sapelo|Croco_tools]] || 1.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[FIAT-Sapelo2|FIAT]] || 1.6.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CrossMap-Sapelo|CrossMap]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[fineSTRUCTURE-Sapelo2|fineSTRUCTURE]] || 2.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CrossMap]] || 0.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[FLASH-Sapelo2|FLASH]] || 1.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ctrax]] || 0.3.2 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[FLTK-Sapelo2|FLTK]] || 1.3.4 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CUDA-Sapelo|CUDA]] || 5.0.35, 6.5.14, 7.5.18, 8.0.61 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Flye-Sapelo2|Flye]] || 2.3.6, 2.6, 2.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CUDA-Sapelo2|CUDA]] || 7.0.28, 7.5.18, 8.0.61, 8.0.61_375.26-GCC-5.4.0-2.26, 9.0.176 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[FoX-Sapelo2|FoX]] || 4.1.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CUDA]] || 4.0.17, 4.2.9, 5.0.35, 6.0.37, 6.5.14 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[freebayes-Sapelo2|Freebayes]] || 1.2.0, 1.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cufflinks-Sapelo|cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[freebayes-Teaching|Freebayes]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[freesasa-Sapelo2|freesasa]] || 2.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Cufflinks-Sapelo2|Cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[FriBidi-Sapelo2|FriBidi]] || 1.0.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Funannotate-Sapelo2|Funannotate]] || 1.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[curl]] || 7.15.5, 7.47.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[FuzzyWuzzy-Sapelo2|FuzzyWuzzy]] || 0.17.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cURL]] || 7.49.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[fxtract-Sapelo2|fxtract]] || 2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cutadapt-Sapelo|Cutadapt]] || 1.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="G"></span> [[G2gtools-Sapelo2|g2gtools]] || 0.2.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cutadapt-Sapelo2|cutadapt]] || 1.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | | [[GAG-Sapelo2|GAG]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cutadapt]] || 1.9.dev1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[GAG-Teaching|GAG]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[GAMESS-Sapelo2|GAMESS]] || 14Feb2018 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[cv2-Sapelo|cv2]] || 3.3.0.10 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[GapFiller-Sapelo2|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CWEB]] || 3.64 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[GapFiller-Teaching|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[GAPIT-Sapelo2|GAPIT]] || 20180524 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[CytoScape-Sapelo|CytoScape]] || 3.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[GAPPadder-Sapelo2|GAPPadder]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | <span id="D"></span>[[Danpos2-Sapelo|Danpos2]] || 2.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[GARLI-Sapelo2|GARLI]] || 2.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Danpos2]] || 2.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GATK-Sapelo2|GATK]] || 3.4-0, 3.8-0, 3.8-1, 4.0.3.0, 4.0.11.0, 4.1.0.0, 4.1.2.0, 4.1.5.0, 4.1.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[datamash-Sapelo|datamash]] || 1.0.7 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[GATK-Teaching|GATK]] || 3.8-0, 3.4-0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[GAUSSIAN-Sapelo2|GAUSSIAN]] || 09, 16 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[datamash]] || 1.0.6 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GAUSSIAN-Teaching|GAUSSIAN]] || 16 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Davinci]] || 2.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GaussView-Sapelo2|GaussView]] || 5, 6.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[DBG2OLC]] || 04062015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GaussView-Teaching|GaussView]] || 6.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Ddocent-Sapelo|ddocent]] || 2.2.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[GBlocks-Sapelo2|GBlocks]] || 0.91b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ddRADseq]] || 0.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GCTA-Sapelo2 |GCTA]] || 1.26.0, 1.93.0-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[DeconSeq-Sapelo|DeconSeq]] || 0.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[GD-Sapelo2|GD]] || 2.66 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[DeconSeq]] || 0.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GDAL-Sapelo2|GDAL]] || 2.1.0, 2.2.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[deepnet-Sapelo|deepnet]] || 20151013 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[gdc-client-Sapelo2 |gdc-client]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[deepnet]] || 20150820 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Gdk-pixbuf-Sapelo2|Gdk-pixbuf]] || 2.36.0 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[deeptools-Sapelo|deeptools]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[GEAN-Sapelo2|GEAN]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[deeptools]] || 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GEM-Sapelo2|GEM]] || 1.0, 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[DELLY-Sapelo|DELLY]] || 0.7.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[GEM-library-Sapelo2 |GEM-library]] || 20130406-045632 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[DELLY]] || 0.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GeneMark.hmm.eukaryotic-Sapelo2|GeneMark.hmm.eukaryotic]] || 4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[demuxipy]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GeneMarkES-Sapelo2|GeneMarkES]] || 4.33, 4.57 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[dendropy-Sapelo|dendropy]] || 3.12.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!--| [[GeneMarkES-Teaching|GeneMarkES]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[GeneMarkS-T-Sapelo2|GeneMarkS-T]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[depict-Sapelo|depict]] || 140721 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[GeneMarkS-Sapelo2|GeneMarkS]] || 4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[detect-NAHR-Sapelo|detect-NAHR]] || 2015.09.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[GenericRepeatFinder-Sapelo2|GenericRepeatFinder]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[DETONATE]] || 20140123 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GenMap-Sapelo2|GenMap]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[DIAMOND-Sapelo|DIAMOND]] ||0.8.36|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Genocore-Sapelo2|Genocore]] || 2020-05-13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[DIAMOND]] || 0.8.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Genome-Sapelo2|Genome]] || Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[DISCOVAR]] || 49856 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GenomeTools-Sapelo2|GenomeTools]] || 1.5.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[DISCOVAR De Novo]] || 52488 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Genrich-Sapelo2|Genrich]] || 0.5, 0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Distruct]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GEOS-Sapelo2|GEOS]] || 3.6.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[diyabc]] || 2.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GET_HOMOLOGUES-Sapelo2|GET_HOMOLOGUES]] || 1.7.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[DLCoal]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[GET_HOMOLOGUES-Teaching|GET_HOMOLOGUES]] || 1.7.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[GET_PHYLOMARKERS-Sapelo2|GET_PHYLOMARKERS]] || 1.2.11, 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[DLCpar-Sapelo|DLCpar]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[gfaviz-Sapelo2|gfaviz]] || 1.0.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[dnaclust]] || rev54 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Gffcompare-Sapelo2|Gffcompare]] || 0.10.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[dnasam]] || 20100621 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[gffread-Sapelo2|gffread]] || 0.9.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[dDocent]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GFlow-Sapelo2|GFlow]] || 0.1.7 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[drmma]] || 0.5 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Ghostscript-Sapelo2|Ghostscript]] || 9.20, 9.22 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | <span id="E"></span>[[ea-utils]] || 1.1.2-822 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GISTIC-Sapelo2|GISTIC]] || 2.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[eclipse]] || 4.3.1 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[gkin-Sapelo2|Gkin]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ECTools]] || 08/18/2014 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GL2PS-Sapelo2|GL2PS]] || 1.4.0 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[edena]] || v3.130110 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GLib-Sapelo2|GLib]] || 2.49.5, 2.53.5, 2.54.3 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[EDGE-pro]] || 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GLIMMER-Sapelo2|GLIMMER]] || 3.02b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[editag]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[GLIMMER-Teaching|GLIMMER]] || 3.02b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[GLPK-Sapelo2|GLPK]] || 4.63, 4.65 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[EMBOSS-Sapelo|EMBOSS]] || 6.5.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[GMAP-GSNAP-Sapelo2|GMAP-GSNAP]] || 2016-11-07, 2018-07-04 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[EMBOSS]] || 6.5.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GMP-Sapelo2|GMP]] || 4.3.2, 6.1.1, 6.1.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[emirge-Sapelo|emirge]] ||0.61.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[gnuplot-Sapelo2|gnuplot]] || 5.0.5 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[emirge]] ||0.61.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GObject-Introspection-Sapelo2|GObject-Introspection]] || 1.49.1, 1.54.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[emmax]] || beta-07Mar2010 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[grace-Sapelo2|grace]] || 5.1.25 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[emmix]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GraftM-Sapelo2|GraftM]] || 0.11.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ensembl-tools]] || 76 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GraphicsMagicK-Sapelo2|GraphicsMagicK]] || 1.3.28 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Entrez-Direct]] || 11/18/2016 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Graphviz-Sapelo2|Graphviz]] || 2.40.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[EPIG-Seq-Sapelo | EPIG-Seq]] || v01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[GROCSVs-Sapelo2|GROCSVs]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[espeak-Sapelo|espeak]] || 1.48.04 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Gromacs-Sapelo2 |Gromacs]] || 2016.4, 2018.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ESTscan]] || 3.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GSL-Sapelo2|GSL]] || 1.16, 2.1, 2.3. 2.4, 2.5 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[evm (EVidenceModeler)]] || r2012-06-25 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GStreamer-Sapelo2|GStreamer]] || 1.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[exabayes-Sapelo | exabayes]] || 1.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[GTDBTk-Sapelo2|GTDBTk]] || 0.2.2, 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[exabayes]] || 1.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[gtftogenepred-Sapelo2|gtftogenepred]] || 377-3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ExaML-Sapelo | ExaML]] || 3.0.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[GTK+-Sapelo2|GTK+]] || 2.24.31 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ExaML]] || 315576 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[GTS-Sapelo2|GTS]] || 0.7.6 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[exonerate-Sapelo | exonerate]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Guile-Sapelo2|Guile]] || 1.8.8 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[exonerate]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="H"></span>[[h5py-Sapelo2|h5py]] || 2.7.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Expander-Sapelo|Expander]] || 7.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[HapCUT-Sapelo2|HapCUT]] || 0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[express]] || 1.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[HapCUT2-Sapelo2|HapCUT2]] || 20190606 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | <span id="F"></span>[[FALCON-Sapelo|FALCON]] || 0.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[HarfBuzz-Sapelo2|HarfBuzz]] || 1.3.1, 1.7.5 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FALCON]] || 0.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[HARP-Sapelo2|HARP]] || 140925_103521 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FAR]] || 2.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Harvest-Teaching|Harvest]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[HarvestTools-Sapelo2|HarvestTools]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FASTA]] || 36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[HH-suite-Sapelo2|HH-suite]] || 3.0-beta.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FASTA]] || 36.3.5e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [File:Up20.png|20px|link=#top]] | | | [[HiC-Pro-Sapelo2|HiC-Pro]] || 2.11.0-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[fasta format cleaner]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Hinge-Sapelo2|Hinge]] || 0.5.0-4-deb_cv1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FastME-Sapelo|FastME]] || 2.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[hindex-Sapelo2|hindex]] || 1.42 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[fastphase-Sapelo|fastphase]] || 1.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[HISAT2-Sapelo2|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[fastphase]] || 1.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[HISAT2-Teaching|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- |
| | | [[HMMER-Sapelo2|HMMER]] || 2.3, 3.1b2, 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FastPlast-Sapelo|FastPlast]] ||1.2.6|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Homer-Sapelo2|Homer]] || 4.9.1, 4.10, 4.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FastQC-Sapelo|FastQC]] || 0.11.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Homer-Teaching|Homer]] || 4.9.1, 4.10, 4.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[HPCGridRunner-Sapelo2|HPCGridRunner]] || 1.0.2 || [[:Category:Tools|Tools]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FastQC]] || 0.11.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[htop-Sapelo2|htop]] || 2.0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FASTQSim-Sapelo|FASTQSim]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[HTSeq-Sapelo2|HTSeq]] || 0.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[fastStructure-Sapelo|fastStructure]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[HTSeq-Teaching|HTSeq]] || 0.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[HTSlib-Sapelo2|HTSlib]] || 1.3.2, 1.6, 1.8 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[fastStructure]] ||1.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[HTStream-Sapelo2|HTStream]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FastTree]] || 2.1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[HUMAnN2-Sapelo2|HUMAnN2]] || 0.11.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FastX-Sapelo|FastX]] || 0.0.13.2, 0.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[HybPiper-Sapelo2|HybPiper]] || 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FastX]] || 0.0.13.2, 0.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[HyPhy-Sapelo2|HyPhy]] || 2.5.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FastUniq]] || 1.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Hypre-Sapelo2|Hypre]] || 2.11.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FCP]] || 1.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="I"></span>[[ICORN2-Sapelo2|ICORN2]] || 0.95 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[fc_squared]] || 20160404 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[IDBA-UD-Sapelo2|IDBA-UD]] || 1.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FFmpeg-Sapelo|FFmpeg]] || 2.8.2 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[IDR-Sapelo2|IDR]] || 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FFmpeg]] || 0.10.2 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[IgBlast-Sapelo2 | IgBlast]] || 1.16.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FFTbor]] || 11.21.2014 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[IGV-Sapelo2 |IGV]] || 2.4.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FFTW-Sapelo|FFTW]] || 2.1.5, 3.3.4 || [[:Category:Math_Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[IGV-Teaching |IGV]] || 2.4.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[IGVTools-Sapelo2 |IGVTools]] || 2.3.98 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FFTW]] || 2.1.5, 3.3.0, 3.3.3 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[illumiprocessor-Sapelo2 |illumiprocessor]] || 2.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Fiji]] || 2015/12/09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[ImageMagick-Sapelo2|ImageMagick]] || 7.0.5, 7.0.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Find_Cns-Sapelo|Find_Cns]] || 2016/07/21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Infernal-Sapelo2|Infernal]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[fineRADstructure-Sapelo|fineRADstructure]] || 2016/12/09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[IonCom-Sapelo2|IonCom]] || 20190521 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FineSTRUCTURE-Sapelo|FineSTRUCTURE]] || 2.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[iprscan-Sapelo2|iprscan (InterProScan)]] || 5.29-68.0, 5.31-70.0, 5.32-71.0, 5.41-78.0, 5.44-90.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FIRE]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[ipyrad-Sapelo2|ipyrad]] || 0.7.24, 0.7.28, 0.7.30, 0.9.19 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FitModel]] ||20140407 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[ipyrad-Teaching|Ipyrad]] || 0.7.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[IPython-Sapelo2|IPython]] || 5.3.0, 6.2.1, 7.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FLASH-Sapelo|FLASH]] || 1.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[IQ-Tree-Sapelo2|IQ-Tree]] || 1.5.5, 1.6.5, 1.6.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FLASH]] || 1.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[IQ-Tree-Teaching|IQ-Tree]] || 1.6.12|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Flexbar]] || 2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[IRMA-Sapelo2|IRMA]] || 0.6.7, 0.9.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FragStats]] || 2.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[ISGPipeline-Sapelo2|ISGPipeline]] || 0.16.10-3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Freebayes-Sapelo|Freebayes]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[IsONclust-Sapelo2 |IsONclust]] || 0.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Freebayes]] || 1.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[IsoSeq3-Sapelo2|IsoSeq3]] || 3.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[FreeSurfer-Sapelo|FreeSurfer]] || 6.0.0 || [[:Category:Medical-Informatics|Medical-Informatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[ITSTool-Sapelo2|ITSTool]] || 2.0.4 || [[:Category:Utility|Utility]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[F-Seq]] || 1.84 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="J"></span>[[JAGS-Sapelo2|JAGS]] || 4.3.0 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Fsl]] || 5.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[JasPer-Sapelo2|JasPer]] || 1.900.1, 2.0.12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | <span id="G"></span>[[gam-ngs-Sapelo|gam-ngs]] || 1.1b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Java-Sapelo2|Java]] || 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144, 1.8.0_202 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[gam-ngs]] || 10/8/2013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Java-Teaching|Java]] || 1.8.0_144, 1.8.0_241, 11.0.2 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GAMESS-Sapelo|GAMESS]] || 5Dec2014 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[jcvi-Sapelo2|jcvi]] || 0.8.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GAMESS]] || May2012R1 with XMVB 2.0, May2013R1, 5Dec2014 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Jellyfish-Sapelo2|Jellyfish]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GAP-Sapelo|GAP]] || 4.8.7 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[JModelTest-Sapelo2|JModelTest]] || 2.1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GapFiller-Sapelo|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Juicer-Sapelo2|Juicer]] || 1.5.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GapFiller]] || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Julia-Sapelo2|Julia]] || 1.3.1|| [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[garli]] || 2.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[JUnit-Sapelo2|JUnit]] || 4.12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Gat-Sapelo|gat]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Jupyter-Sapelo2|Jupyter]] || 4.3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[gatk-Sapelo|gatk]] || 3.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="K"></span>[[Kaiju-Sapelo2|Kaiju]] || 1.6.2, 1.7.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[gatk]] || 3.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[kallisto-Sapelo2|kallisto]] || 0.43.1, 0.46.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Gatk_lite-Sapelo|gatk_lite]] || 2.3.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[kallisto-Teaching|kallisto]] || 0.43.1, 0.46.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[KAT-Sapelo2|KAT]] || 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GAUSSIAN-Sapelo|GAUSSIAN]] || 09 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Kent_tools-Sapelo2|Kent_tools]] || 20190208, 20200512 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GAUSSIAN09]] || 09 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[keras-Sapelo2|keras]] || 2.0.6, 2.2.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GaussView-Sapelo|GaussView]] || 5 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[KinFin-Sapelo2|KinFin]] || 1.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GaussView]] || 5 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[KmerGenie-Sapelo2|KmerGenie]] || 1.7044 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Gblocks-Sapelo|Gblocks]] || 0.91b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[KmerGenie-Teaching|KmerGenie]] || 1.7044 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Kraken2-Sapelo2|Kraken2]] || 2.0.7-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Gblocks]] || 0.91b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[KronaTools-Sapelo2|KronaTools]] || 2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GBSX]] || 1.1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="L"></span><!-- [[LADR-Teaching|LADR]] || 2009-11A || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GCTA-Sapelo | GCTA]] || 1.26.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | --> [[LAME-Sapelo2|LAME]] || 3.100 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[gdal-Sapelo|gdal]] || 2.1.0 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[LAMMPS-Sapelo2|LAMMPS]] || 30Jul16, 11Aug17 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[gdal]] || 1.9.2 || [[:Category:Library|Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[LAPACK-Sapelo2|LAPACK]] || 3.6.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GDB]] || 7.0.1 || [[:Category:Debugger|Debugger]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[LAST-Sapelo2|LAST]] || 956, 959, 1047 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GDC-client-Sapelo | GDC-client]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[LASTZ-Sapelo2|LASTZ]] || 1.04.00 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GDC-client]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[LDhat-Sapelo2|LDhat]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Gd-Sapelo|gd]] || 2.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[LDhelmet-Sapelo2|LDhelmet]] || 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GEM-Sapelo | GEM]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Leafcutter-Sapelo2|Leafcutter]] || 0.2.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GEM]] ||2.5|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Lep-MAP3-Sapelo2|Lep-MAP3]] || 0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GEMMA]] || 0.95alpha || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[libssh2-Sapelo2|libssh2]] || 1.9.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Gemini-Sapelo | Gemini]] || 0.20.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[LibStatGen-Sapelo2|LibStatGen]] || 1.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GeneMark]] || 4.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[LibTIFF-Sapelo2|LibTIFF]] || 4.0.6, 4.0.8, 4.0.9 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GeneMark-ES-Sapelo|GeneMark-ES]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[LINKS-Sapelo2|LINKS]] || 1.8.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Gengetopt-Sapelo|Gengetopt]] ||2.22|| [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[LittleCMS-Sapelo2|LittleCMS]] || 2.8 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GenomeTools-Sapelo|GenomeTools]] ||1.5.9|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[LLVM-Sapelo2|LLVM]] || 3.8.1, 4.0.0, 5.0.1, 6.0.0 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Genome]] || Phred version: 0.071220.c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[LMDB-Sapelo2|LMDB]] || 0.9.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GenomeMapper]] || 0.4.4 (Version for SHORE/WMD3) || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[LoFreq-Sapelo2|LoFreq]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GenomeTools-Sapelo | GenomeTools]] || 1.5.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Log-Log4perl-Sapelo2|Log-Log4perl]] || 1.49 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GenomeTools]] || 1.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[LongRanger-Sapelo2|LongRanger]] || 2.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[SMRT-Analysis|GenomicConsensus]] || 0.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[LoRDEC-Sapelo2|LoRDEC]] || 0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[gensim-Sapelo|gensim]] || 2.3.0 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[LoRMA-Sapelo2|LoRMA]] || 0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[geos-Sapelo|geos]] || 3.5.0 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[LRCstats-Sapelo2|LRCstats]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[geos]] || 3.3.3, 3.4.2 || [[:Category:Library|Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[lrslib-Sapelo2|lrslib]] || 6.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[gerud3-Sapelo|Gerud3]] || 12202017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[LS-DYNA-Sapelo2|LS-DYNA]] || 10.123355 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Gff3ToGenePred-Sapelo|gff3ToGenePred]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[LS-PrePost-Sapelo2|LS-PrePost]] || 4.5 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Gimmemotifs]] || 0.10.0b4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[LtrDetector-Sapelo2|LtrDetector]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Gingr]] || 1.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[LTR_Finder-Sapelo2|LTR_Finder]] || 1.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[git-Sapelo|git]] || 1.7.1, 2.7.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[LTR_retriever-Sapelo2|LTR_retriever]] || 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[git]] || 1.7.6, 1.7.11.3, 2.0.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[LUMPY-Sapelo2|LUMPY]] || 0.2.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GKIN-Sapelo|GKIN]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[LZO-Sapelo2|LZO]] || 2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GKIN]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="M"></span>[[M4-Sapelo2|M4]] || 1.4.16, 1.4.17, 1.4.17 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Glimmer]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MacSyFinder-Sapelo2|MacSyFinder]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GlimmerHMM]] || 3.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Macs2-Sapelo2|MACS2]] || 2.1.1, 2.1.2, 2.2.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[gmap-gsnap-Sapelo|gmap-gsnap]] || 2017-01-14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MAFFT-Sapelo2|MAFFT]] || 7.273, 7.313, 7.397, 7.407, 7.453, 7.470 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[gmap-gsnap]] || 2014-12-14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[MAFFT-Teaching|MAFFT]] || 7.130, 7.273, 7.313 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Magic-BLAST-Sapelo2|Magic-BLAST]] || 1.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GMA-Sapelo|GMA]] ||0.1.5|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Magma-GPU-Sapelo2|Magma-GPU]] || 2.3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GMATA-Sapelo|GMATA]] || 2017-01-14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Magma-Sapelo2|Magma]] || 2.22-9, 2.24-4, 2.25 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GMP-Sapelo|GMP]] || 4.3.1, 6.0.0 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[mahotas-Sapelo2|mahotas]] || 1.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GMPFRXX-Sapelo|GMPFRXX]] || 20081116 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MAJIQ-Sapelo2|MAJIQ]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GNU Compilers-Sapelo|GNU Compilers]] || 4.4.7, 4.7.4, 5.3.0 || [[:Category:Compiler|Compiler]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Maker-Sapelo2|Maker]] || 3.01.02-beta,2.31.9, 2.31.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GNU Compilers]] || 4.1.2, 4.4.7, 4.5.3, 4.7.1, 5.3.0 || [[:Category:Compiler|Compiler]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Maker-Sap2test|Maker]] || 3.01.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sap2test|Sap2test]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GNUMAP]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Maker-Teaching|Maker]] || 2.31.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Mako-Sapelo2|Mako]] || 1.0.4, 1.0.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Gnuplot-Sapelo|gnuplot]] || 4.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MAnorm-Sapelo2|MAnorm]] || 1.1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[gnuplot]] || 4.0, 4.6.0 || [[:Category:Graphics|Graphics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MARVEL-Sapelo2|MARVEL]] || 20180918 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[gprof]] || 2.17 || [[:Category:Profiler|Profiler]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Mash-Sapelo2|Mash]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[gpu-blast]] || 1.1 with ncbi-blast-2.2.25+ || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MashMap-Sapelo2|MashMap]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[grace-Sapelo| grace]] || 5.1.25 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MaSIF-Sapelo2|MaSIF]] || 20200722 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[grace]] || 5.1.22 || [[:Category:Graphics|Graphics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MaSuRCA-Sapelo2|MaSuRCA]] || 3.2.2, 3.2.9, 3.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GrADS-Sapelo|GrADS]] || 2.1a3 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Mathematica-Sapelo2|Mathematica]] || 12.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GraftM-Sapelo|GraftM]] || 0.10.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MatLab-Sapelo2|Matlab]] || R2017b, R2018b, R2019b || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GraPhlAn]] || 0.9.7 || [[:Category:Graphics|Graphics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[MatLab-Teaching|Matlab]] || R2018b || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Matplotlib-Sapelo2|Matplotlib]] || 1.5.3, 2.0.2, 2.1.0, 2.1.2, 2.2.3, 3.0.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Graphviz-Sapelo|Graphviz]] ||2.40.1|| [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Mauve-Sapelo2|Mauve]] || 2015-02-13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Gromacs-Sapelo | Gromacs]] || 5.0.2, 5.1.3 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Maven-Sapelo2|Maven]] || 3.5.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Gromacs]] || 4.5.5, 4.6.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Mawk-Sapelo2|Mawk]] || 1.3.4|| [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GSL-Sapelo|GSL]] || 1.16 || [[:Category:Math_Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MaxBin-Sapelo2|MaxBin]] || 2.2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[GSL]] || 1.9, 1.15, 1.16 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MCL-Sapelo2|MCL]] || 14.137 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[gss]] || || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MCScanX-Sapelo2 |MCScanX]] || 0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | <span id="H"></span> [[h5py-Sapelo|h5py]] || 2.6.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Medaka-Sapelo2 |Medaka]] || 0.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[hapcut2-Sapelo|hapcut2]] || 20170126 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Medusa-Sapelo2 |Medusa]] || 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Haplomerger2]] || 20151124 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MEGA-Sapelo2 |MEGA]] || 7.0.26-1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Haploview-Sapelo|Haploview]] || 4.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MEGAHIT-Sapelo2 |MEGAHIT]] || 1.1.1, 1.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Hapmix]] || 2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Megalodon-Sapelo2|Megalodon]] || 0.1.0, 1.0.0, 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Harp-Sapelo|harp]] || 130306_105556 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Megam-Teaching|Megam]] || 0.92 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[MeGAMerge-Sapelo2|MeGAMerge]] || 3.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[HARP]] || 130306_105556 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MEME-Sapelo2|MEME]] || 4.11.0, 5.0.0_1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[HDF5-Sapelo | HDF5]] || 1.8.6, 1.8.14 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Meraculous-Sapelo2|Meraculous]] || 2.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[HDF5]] || 1.6.4, 1.8.9 || [[:Category:Library|Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Mercurial-Sapelo2 |Mercurial]] || 4.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[HGTFinder-Sapelo|HGTFinder]] || 20170929 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Mesa-Sapelo2 |Mesa]] || 12.0.2, 17.3.6 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[HH-suite-Sapelo|HH-suite]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MET-Sapelo2 |MET]] || 7.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[HH-Suite]] || 2.0.16 || [[:Category:Library|Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MetaBAT-Sapelo2|MetaBAT]] || 2.12.1, 2.15-4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Hic-pro-Sapelo|hic-pro]] || 2.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[METABOLIC-Sapelo2|METABOLIC]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[HiCUP-Sapelo|HiCUP]] ||0.5.9|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MetaCLADE-Sapelo2|MetaCLADE]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Hinge-Sapelo|HINGE]] || 032717 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MetaPhlAn-Sapelo2|MetaPhlAn]] || 1.7.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[HipMer-Sapelo|HipMer]] || 0.9.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MetaPhlAn2-Sapelo2|MetaPhlAn2]] || 2.7.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[HISAT2-Sapelo|HISAT2]] ||2.1.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[methylpy-Sapelo2|methylpy]] || 1.2.9, 1.3.2, 1.4.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Hmmer-Sapelo|Hmmer]] || 3.1b2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[METIS-Sapelo2|METIS]] || 5.1.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Hmmer]] || 3.1b1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MG-RAST-Tools-Sapelo2 |MG-RAST-Tools]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Homer-Sapelo|Homer]] || 4.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[minced-Sapelo2|minced]] || 0.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Homer]] || 4.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Minia-Sapelo2|Minia]] || 3.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[hotspot]] || 5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[miniasm-Sapelo2|miniasm]] || 0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[htseq-Sapelo|htseq]] || 0.6.1p1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[miniasm-Teaching|miniasm]] || 0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Miniconda3-Sapelo2|Miniconda3]] || 4.4.10 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[htseq]] || 0.5.3p3, 0.6.1p1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[minimap2-Sapelo2|minimap2]] || 2.10, 2.13, 2.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[HUMAnN2-Sapelo|HUMAnN2]] || 0.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[minimap2-Teaching|minimap2]] || 2.10, 2.13, 2.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[MinPath-Sapelo2|MinPath]] || 1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[HyDe-Sapelo|HyDe]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MIonSite-Sapelo2|MIonSite]] || 20190528 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[HyPhy-Sapelo|HyPhy]] || 2.3.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Mip-Sapelo2|mip]] || 1.7.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[HyPhy]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Mirdeep-p-Sapelo2|mirdeep-p]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[IDBA-Sapelo | IDBA]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MiRDeep2-Sapelo2|miRDeep2]] || 0.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[IDBA-UD]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[miRDP2-Sapelo2|MiRDP2]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[igb]] || 6.7.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MISO-Sapelo2|MISO]] || 0.5.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Igraph|igraph]] || 0.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MITE-Hunter-Sapelo2|MITE-Hunter]] || 11-2011 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[IGV-Sapelo | IGV]] || 2.3.81 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MITE-Tracker-Sapelo2|MITE-Tracker]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[IGV]] || 2.1.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MITObim-Sapelo2|MITObim]] || 1.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[IGVTools-Sapelo |IGVTools]] ||2.3.81 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MitoZ-Sapelo2|MitoZ]] || 2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[IGVTools]] || 2.3.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[mmquant-Sapelo2|mmquant]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[illumiprocessor-Sapelo |illumiprocessor]] ||2.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Montreal Forced Aligner-Sapelo2|Montreal Forced Aligner]] || 1.0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[IMa2]] || 8.27.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[MOTECC_qmdcp-Teaching|MOTECC_qmdcp]] || 90 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Mothur-Sapelo2|Mothur]] || 1.39.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[indel-Seq-Gen]] || 2.02 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[motif-Sapelo2|motif]] || 2.3.5, 2.3.8 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Infernal]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MPJ-Express-Sapelo2|MPJ-Express]] || 0.44 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[InStruct]] || 3.2.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MrBayes-Sapelo2|MrBayes]] || 3.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Intel Compilers-Sapelo|Intel Compilers]] || 14.0.0, 15.0.2 || [[:Category:Compiler|Compiler]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MREPS-Sapelo2|MREPS]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Intel Compilers]] || 2013 SP1 || [[:Category:Compiler|Compiler]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[ms-Teaching|ms]] || 20140304 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[MSG-Sapelo2|MSG]] || 0.4.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[iprscan-Sapelo|iprscan (InterProScan)]] || 5.16-55.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[MSG-Teaching|MSG]] || 0.4.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[MSTmap-Sapelo2|MSTmap]] || 20181130 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[iprscan (InterProScan)]] || 5.9-50.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MultiQC-Sapelo2|MultiQC]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ipyrad-Sapelo|ipyrad]] || 0.3.7, 0.5.15, 0.7.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[MUMmer-Sapelo2|MUMmer]] || 3.23, 4.0.0beta2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[IQ-Tree-Sapelo|IQ-Tree]] || 1.5.5, 1.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[MUMmer-Teaching|MUMmer]] || 3.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[MUSCLE-Sapelo2|MUSCLE]] || 3.8.1551, 3.8.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[IQ-Tree]] || 1.5.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MuTect-Sapelo2|MuTect]] || 1.1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[iRep-Sapelo|iRep]] || 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[MuTect-Teaching|MuTect]] || 1.1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[muver-Sapelo2|muver]] || 0.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[iRODS]] || 4.2.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[mvqtlcim-Sapelo2|mvqtlcim]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[iscan]] || 1.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[MZmine2-Sapelo2|MZmine2]] || 2.40.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[I-TASSER-Sapelo|I-TASSER]] || 5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="N"></span> [[NAL_RNA_seq_annotation-Sapelo2|NAL_RNA_seq_annotation]] ||20200728 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[IsoSeq_SA3nUP-Sapelo|IsoSeq_SA3nUP]] || 09272017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[NAMD-Sapelo2|NAMD]] || 2.13 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ITK]] || 3.20.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Nanocorr-Sapelo2|Nanocorr]] || 5.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[iva-Sapelo|iva]] || 1.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[NanoFilt-Sapelo2|NanoFilt]] || 2.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[iva]] || 1.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[NanoPlot-Sapelo2|NanoPlot]] || 1.26.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | <span id="J"></span>[[JAGS-Sapelo|JAGS]] || 3.4.0, 4.1.0, 4.2.0 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Nanopolish-Sapelo2|Nanopolish]] || 0.10.2, 0.11.1, 0.12.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[JAGS]] || 3.3.0, 4.1.0 || [[:Category:Statistics|Statistics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[NASM-Sapelo2|NASM]] || 2.11, 2.12, 2.13 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[JasPer-Sapelo|JasPer]] || 1.900.1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[NBO-Sapelo2|NBO]] || 7.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[JasPer]] || 1.900.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[NCCL-Sapelo2|NCCL]] || 2.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Java-Sapelo|Java]] || 6, 7, 8 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[NCL-Sapelo2|NCL]] || 6.4.0, 6.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Java]] || 6, 7, 8 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[NCL-Teaching|NCL]] || 6.4.0, 6.5.0 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[ncview-Sapelo2|ncview]] || 2.1.7 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Jellyfish-Sapelo|Jellyfish]] || 2.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[NCO-Sapelo2|NCO]] || 4.7.4 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Jellyfish]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[NCO-Teaching|NCO]] || 4.7.4 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Necklace-Sapelo2|Necklace]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[JModelTest]] || 2.1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[NeEstimator-Sapelo2|NeEstimator]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Julia]] || 0.3.0-beta, 0.3.3 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Neptune-Sapelo2|Neptune]] || 1.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Jupyter-Sapelo|Jupyter Notebook]] || 2.5.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[NetSurfP-Sapelo2|NetSurfP]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Jupyter|Jupyter Notebook]] || 2.5.0 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Newbler-Sapelo2|Newbler]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | <span id="K"></span>[[k-link]] || 03 27, 2009 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Nextflow-Sapelo2|Nextflow]] || 18.10.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[kallisto]] || 0.42.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[NextGenMap-Sapelo2|NextGenMap]] || 0.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[kallisto-Sapelo|kallisto]] || 0.42.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[ngmlr-Sapelo2|ngmlr]] || 0.2.6-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[KAT-Sapelo|KAT]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[NGmerge-Sapelo2|NGmerge]] || 0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Kat]] || 1.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[NGS-Sapelo2|NGS]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[kentUtils-Sapelo|KentUtils]] || 302.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[NGSEPcore-Sapelo2|NGSEPcore]] || 3.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[keras-Sapelo|keras]] || 1.0.8, 2.0.4 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[ngsplot-Sapelo2|ngsplot]] || 2.6.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[keras|keras]] || 1.0.8 || [[:Category:Other|Other]] || [[:Category:zcluster|zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[NGSQCToolkit-Sapelo2|NGSQCToolkit]] || 2.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[KisSplice]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[nhPhyML-Sapelo2|nhPhyML]] || 20180515 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Kraken-Sapelo|Kraken]] || 0.10.5-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[NiBabel-Sapelo2|NiBabel]] || 2.2.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Kraken]] || 0.10.5-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[nistats-Sapelo2|nistats]] || 0.0.1a0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[KmerGenie-Sapelo|KmerGenie]] || 1.7016 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[NLopt-Sapelo2|NLopt]] || 2.4.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[KmerGenie]] || 1.5393 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Nseg-Sapelo2|Nseg]] || 20180530 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | <span id="L"></span> [[Lagrange]] || 20130526 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[NucleoATAC-Sapelo2|NucleoATAC]] || 0.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LAMMPS-Sapelo | LAMMPS]] || 16Aug13, 5Sep14, 10Aug15, 7Dec15, 16Feb16, 30Jul16, 17Nov16 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[NWChem-Sapelo2|NWChem]] || 6.8 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LAMMPS]] || 23Sep13, 5Sep14, 10Aug15 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="O"></span>[[Oases-Sapelo2|Oases]] || 0.2.08, 0.2.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LAPACK]] || 3.0, 3.4.2 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[OCaml-Sapelo2|OCaml]] || 4.01.0, 4.02.3 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LAST-Sapelo|LAST]] || 719 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Ont-Guppy-Sapelo2|Ont-Guppy]] || 3.2.4, 4.0.11, 4.0.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LASTZ-Sapelo|LASTZ]] || 1.02.00, 1.03.73 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[OpenBUGS-Sapelo2|OpenBUGS]] || 3.2.3 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LASTZ]] || 1.03.02 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[OpenCV-Sapelo2|OpenCV]] || 3.4.1, 3.4.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LCS]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[OpenJPEG-Sapelo2|OpenJPEG]] || 2.3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LDDist]] || 1.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[OpenSlide-Sapelo2|OpenSlide]] || 3.4.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LDhat-Sapelo|LDhat]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[OpenSlide-Python-Sapelo2|OpenSlide-Python]] || 1.1.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LDhelmet-Sapelo|LDhelmet]] || 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[ORCA-Sapelo2 |ORCA]] || 3.0.3, 4.0.0.2, 4.0.1.2, 4.1.0, 4.1.1, 4.2.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LDhot-Sapelo|LDhot]] || 0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[OrfM-Sapelo2|OrfM]] || 0.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LEfSe-Sapelo|LEfSe]] || 20160621 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[OrganelleRef_PBA-Sapelo2|OrganelleRef_PBA]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LEfSe]] || 20160621 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:zcluster|zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[ORGanelle_ASeMbler-Sapelo2|ORGanelle_ASeMbler]] || 0.2.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Lep-Map2]] || 0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[ORGanelle_ASeMbler-Sapelo2|ORGASM]] || 0.2.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[libradtran-Sapelo|libradtran]] || 1.7, 2.0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[ORP-Sapelo2|ORP]] || 2.0.0, 2.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[librosa-Sapelo|librosa]] || 0.4.3 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[OrthoFinder-Sapelo2|OrthoFinder]] || 2.1.2, 2.2.7, 2.3.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[libsequence]] || 1.7.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[OrthoFinder-Teaching|OrthoFinder]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[OrthoMCL-Sapelo2|OrthoMCL]] || 2.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LIBSVM-Sapelo|LIBSVM]] || 3.21 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="P"></span>[[p7zip-Sapelo2|p7zip]] || 16.02 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LIBSVM]] || 3.17 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PAGIT-Sapelo2|PAGIT]] || 1.64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Lighter]] || 06192015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Pairix-Sapelo2|Pairix]] || 0.3.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LLVM-Clang]] || 3.1 || [[:Category:Compiler|Compiler]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[pairtools-Sapelo2|pairtools]] || 0.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[lmod]] || 5.8 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Pal_finder-Sapelo2|Pal_finder]] || 0.02.04 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LoFreq-Sapelo|LoFreq]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PAML-Sapelo2|PAML]] || 4.9h || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LoFreq]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PAML-Teaching|PAML]] || 4.9i || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- |
| | | [[PANDAseq-Sapelo2 |PANDAseq]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[lsa]] || 11182011 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Pangloss-Sapelo2 |Pangloss]] || 0.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LTR_retriever-Sapelo|LTR_retriever]] || 20170907 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Pango-Sapelo2 |Pango]] || 1.40.3, 1.41.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LUMPY]] || 0.2.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Panoply-Sapelo2|Panoply]] || 4.11.6 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[LZO-Sapelo|LZO]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Parliament2-Sapelo2|Parliament2]] || 0.1.8, 0.1.11, hgsc || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | <span id="M"></span>[[Macs2-Sapelo|MACS2]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Parsnp-Sapelo2|Parsnp]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[macs]] || 1.4.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PartitionFinder-Sapelo2|PartitionFinder]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[macs2]] || 2.1.0.20140616 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[PartitionFinder-Teaching|PartitionFinder]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[PanOCT-Sapelo2|PanOCT]] || 3.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MaCS-simulator-Sapelo|MaCS-simulator]] || 0.5d || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PASA-Sapelo2|PASA]] || 2.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Mafft-Sapelo|Mafft]] || 7.273-e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PASTA-Sapelo2|PASTA]] || 1.8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Mafft]] || 7.029-e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[PASTA-Teaching|PASTA]] || 1.8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[PAUP-Sapelo2|PAUP]] || 4a165_centos64, 4a166_centos64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Mageck-vispr-Sapelo|mageck-vispr]] || 02242017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[pb-assembly-Sapelo2|Pb-assembly]] || 0.0.2, 0.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Mageck-Sapelo|mageck]] || 0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[pbh5tools-Sapelo2 |pbh5tools]] || 0.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Magma-Sapelo|Magma]] || 2.22-9 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PBLAT-Sapelo2|PBLAT]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Magma]] || 2.21-3 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[pbmm2-Sapelo2|pbmm2]] || 1.0.0, 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Mahotast-Sapelo|Mahotas]] || 1.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[pcawg-dkfz-workflow-Sapelo2|pcawg-dkfz-workflow]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[maker]] || 2.31.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PBSuite-Sapelo2 |PBSuite]] || 15.8.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Make-Sapelo|Make]] || 4.2 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PCRE-Sapelo2 |PCRE]] || 8.38, 8.39, 8.41 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Maple]] || 16 || [[:Category:Other|Other]], [[:Category:Programming|Programming]], [[:Category:Graphics|Graphics]]|| [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PeakRanger-Sapelo2|PeakRanger]] || 1.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MapSplice2]] || 2.1.7 || [[:Category:Bioinformatics|Bioinformatics]]|| [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PEAR-Sapelo2|PEAR]] || 0.9.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MAQ]] || 0.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Perl-Sapelo2|Perl]] || 5.20.3, 5.24.0, 5.24.1, 5.26.0, 5.26.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MARDIGRAS]] || 3.21 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Perl-Teaching|Perl]] || 5.30.0 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MaSuRCA-Sapelo|MaSuRCA]] || 3.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PETSc-Sapelo2|PETSc]] || 3.8.4 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MaSuRCA]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PGDBG-Sapelo2|PGDBG]] || 18.10 || [[:Category:Debugger|Debugger]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MATS]] || 3.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PGDSpider-Sapelo2|PGDSpider]] || 2.1.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Mathematica]] || 9.0 (currently not available) || [[:Category:Other|Other]], [[:Category:Programming|Programming]] , [[:Category:Graphics|Graphics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PhaseGenomics-Sapelo2|PhaseGenomics]] || 20181220 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MatLab-Sapelo|Matlab]] || R2015aSP1, R2015b, R2016b || [[:Category:Other|Other]], [[:Category:Programming|Programming]], [[:Category:Graphics|Graphics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[phaser-Sapelo2 |phaser]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MatLab]] || R2012a (7.14), R2013a (8.1) || [[:Category:Other|Other]], [[:Category:Programming|Programming]], [[:Category:Graphics|Graphics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PhaseTank-Sapelo2|PhaseTank]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Mauve-Sapelo|Mauve]] ||2.4.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PHASIS-Sapelo2 |PHASIS]] || 3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Mauve]] || snapshot_2015-02-13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PHENIX-Sapelo2|PHENIX]] || 1.18.2-3874 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MAVEN-genome]] || 682, 769, 774 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Phobius-Sapelo2|Phobius]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MaxBin-Sapelo | MaxBin]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Phred/Phrap/Conced-Sapelo2|Phred/Phrap/Conced]] || Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MCScanX-Sapelo |MCScanX ]] || 0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Phycas-Sapelo2|Phycas]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MCScanX-transposed-Sapelo |MCScanX-transposed ]] || 0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PHYLIP-Sapelo2|PHYLIP]] || 3.697 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MCScanX]] || 10/18/2013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PhyloBayes-MPI-Sapelo2 |PhyloBayes-MPI]] || 20161021 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MCL]] || 12-135 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PhyloCSF-Sapelo2 |PhyloCSF]] || 20180919 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MDEnergy-Sapelo | MDEnergy]] || 2.3 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PhyloSift-Sapelo2 |PhyloSift]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MEAD]] || 2.2.9 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PhyloSkeleton-Sapelo2 |PhyloSkeleton]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MEGA]] || 7.0.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[phyluce-Sapelo2|Phyluce]] || 1.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Megahit-Sapelo | Megahit]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PhyML-Sapelo2|PhyML]] || 3.3.20170530 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Megahit]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PhyParts-Sapelo2|PhyParts]] || 0.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MeGAMerge]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[picard-Sapelo2 |picard]] || 2.16.0, 2.21.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MEGAN-Sapelo | MEGAN]] || 6.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[picard-Teaching|Picard]] || 2.16.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[PICRUSt-Sapelo2 |PICRUSt]] || 1.1.3, 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[megan]] || 5.5.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[pigz-Sapelo2|pigz]] || 2.3.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MEME-Sapelo|MEME]] || 4.10.2, 4.11.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PIL-Sapelo2|PIL]] || 1.1.7 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MEME]] || 4.10.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PILER-Sapelo2|PILER]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MEMo]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Pilon-Sapelo2|Pilon]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Meraculous]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[pilon-Teaching|Pilon]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[PlantCV-Sapelo2|PlantCV]] || 3.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Meraculous-Sapelo | Meraculous ]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Platypus-Sapelo2|Platypus]] || 0.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Mercurial-Sapelo | Mercurial ]] || 3.9 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PLEK-Sapelo2|PLEK]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MetaBAT-Sapelo|MetaBAT]] || 20151110 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PLINK-Sapelo2|PLINK]] || 1.07, 1.9b, 2.0-alpha1, 2.0-alpha2, 2.0-alpha2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Metal-Sapelo|Metal]] || 20110325 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[plmc-Sapelo2|Plmc]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MetaMOS]] || v1.5rc1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Porechop-Sapelo2|Porechop]] || 0.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Metaphlan2-Sapelo|Metaphlan2]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PoSSuMsearch-Sapelo2|PoSSuMsearch]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Metaphlan2]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[pplacer-Sapelo2|Pplacer]] || 1.1.alpha19 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[metaseq]] || 0.5.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Praat-Sapelo2|Praat]] || 6048-Linux64-nogui || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Metavelvet-Sapelo|Metavelvet]] || 1.2.02 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PRANK-Sapelo2|PRANK]] || 170427 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Metavelvet]] || 1.2.02 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PRAPI-Sapelo2|PRAPI]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MetavelvetSL-Sapelo|MetavelvetSL]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Primer3-Sapelo2|Primer3]] || 2.3.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Metaxa2|metaxa2]] || 2.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PRINSEQ-Sapelo2|PRINSEQ]] || 0.20.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MethPipeline-Sapelo|MethPipeline]] || 0.1_120115 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[ProbABEL-Sapelo2|ProbABEL]] || 0.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[methylpy-Sapelo|methylpy]] || 08/25/2016 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[prodigal-Sapelo2|Prodigal]] || 2.6.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[METIS]] || 4.0.3, 5.1.0 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[progressiveCactus-Sapelo2|progressiveCactus]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MGA]] || 1.5.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[ProphET-Sapelo2 |ProphET]] || 20200323 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MHAP-Sapelo|MHAP]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PROJ-Sapelo2|PROJ]] || 4.9.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Migrate-Sapelo|Migrate]] || 3.6.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Prokka-Sapelo2|Prokka]] || 1.13, 1.14.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Migrate]] || 3.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Prokka-Teaching|Prokka]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[proovread-Sapelo2|proovread]] || 2.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Minia]] || 1.4683 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[proovread-Teaching|Proovread]] || 2.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[protobuf-Sapelo2|protobuf]] || 3.3.0, 3.4.0, 3.6.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Minimac3-Sapelo|Minimac3]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[LADR-Teaching|prover9]] || 2009-11A || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[PSI4-Sapelo2|PSI4]] || 1.3.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Minimap-Sapelo|Minimap]] || 0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[psmc-Sapelo2|psmc]] || 0.6.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MIRA]] || 3.9.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[pVACtools-Sapelo2|pVACtools]] || 1.5.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MIRA]] || 3.9.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[pyani-Sapelo2|pyani]] || 0.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MiRanda-Sapelo|miRanda]] || aug2010 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[pybedtools-Sapelo2|pybedtools]] || 0.7.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Mirdeep-p-Sapelo|mirdeep-p]] ||1.3|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[PyCUDA-Sapelo2|PyCUDA]] || 2019.1.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MiRDeep2-Sapelo|miRDeep2]] || 0.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[pyDNA-Sapelo2|pyDNA]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MISO-Sapelo|MISO]] || 09132016 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[pydub-Sapelo2|pydub]] || 0.22.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MISO]] || 09132016 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[pyfasta-Sapelo2|pyfasta]] || 0.5.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MITE-Hunter]] || 11-2011 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PyMOL-Sapelo2|PyMOL]] || 2.3.0a0 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MixMapper-Sapelo|MixMapper]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PyNBS-Sapelo2 |pyNBS]] || 0.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MKL-Sapelo|MKL]] || 11.1, 11.2 || [[:Category:Math_Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Pynini-Teaching|Pynini]] || 2.0.8 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[PyPy-Sapelo2 |PyPy]] || 6.0.0 (2.7.14) || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MKL]] || 11.0 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Pysam-Sapelo2 |Pysam]] || 0.10.0, 0.13.0, 0.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[mlehot-Sapelo|mlehot]] || 1.8.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Python-Sapelo2 |Python]] || 2.7.12, 2.7.14, 3.5.2, 3.6.4, 3.7.0, 3.7.2, 3.7.4, 3.8.2 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MOABS-Sapelo|MOABS]] || 1.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Python-Teaching|Python]] || 3.7.4, 2.7.16 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MOABS]] || 1.2.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[PyTorch-Sapelo2|PyTorch]] || 0.3.1, 1.0.0, 1.2.0, 1.3.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MOCAT-Sapelo|MOCAT]] || 1.3r2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[pyvcf-Sapelo2 |pyvcf]] || 0.6.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Modeller]] || 9.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Pweave-Teaching|Pweave]] || 0.30.3 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | <span id ="Q"></span>[[q2-brocc-Sapelo2|q2-brocc]] || 2018.6.0.dev0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MONO]] || 3.0.3 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[QCTOOL-Sapelo2|QCTOOL]] || 2.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MOSAIK]] || 2.2.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[qiaseq-16S-Sapelo2|qiaseq-16S]] || 20190306 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MOTECC qmdcp]] || 90 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[QIIME2-Sapelo2|QIIME2]] || 2018.2, 2018.4, 2018.6, 2018.8, 2018.11, 2019.1, 2020.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MOTHUR-Sapelo|MOTHUR]] || 1.37.5, 1.39.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[QIIME2-Teaching|QIIME2]] || 2018.4, 2018.6, 2018.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[QIIME-Sapelo2|QIIME]] || 1.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MOTHUR]] || 1.37.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[QTLcartographer-Sapelo2|QTLcartographer]] || 1.17j || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MP-EST-Sapelo|MP-EST]] || 1.5 || [[:Category:Programming|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Qualimap2-Sapelo2|Qualimap2]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MP-EST]] || 1.2 || [[:Category:Programming|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Quantum Espresso-Sapelo2|Quantum Espresso]] || 6.2.0, 6.3.0-QMCPACK-3.6.0-patch, 6.4.1, 6.5 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[mpeg2vidcodec]] || 12 || [[:Category:Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[QUAST-Sapelo2|QUAST]] || 4.2, 4.6.1, 4.6.3, 5.0.0, 5.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MPFR-Sapelo|MPFR]] || 3.1.2 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[QMCPACK-Sapelo2|QMCPACK]] || 3.6.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MPFRC++-Sapelo|MPFRC++]] || 3.6.2 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="R"></span>[[R-Sapelo2 |R]] || 3.4.4, 3.5.0, 3.6.1, 3.6.2, 4.0.0 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[mpi4py]] || 1.3 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[R-Teaching|R]] || 4.0.0 || [[:Category:Statistics|Statistics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[mpiblast]] || 1.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[racon-Sapelo2 |racon]] || 20180406, 1.3.2, 1.4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Mplus-Sapelo|Mplus]] || 7.4 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[racon-Teaching |racon]] || 1.4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[RaGOO-Sapelo2|RaGOO]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MrBayes-Sapelo|MrBayes]] || 3.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[randfold-Sapelo2|randfold]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MrBayes]] || 3.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[RATT-Sapelo2|RATT]] || 20180710 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MrDemuxy-Sapelo|MrDemuxy]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[RAxML-NG-Sapelo2 |RAxML-NG]] || 0.7.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[mrfast]] || 2.5.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[RAxML-Sapelo2 |RAxML]] || 8.2.4, 8.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MSA]] || 3.8.1b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[RAxML-Teaching|RAxML]] || 8.2.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MSG]] || 0.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Ray-Sapelo2 |Ray]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MSTMap-Sapelo|MSTmap]] || 20170927 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Rcorrector-Sapelo2|Rcorrector]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MSTMap]] || 20160408 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Realphy-Sapelo2|Realphy]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MultiLoc2-Sapelo|MultiLoc2]] || 26-10-2009 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Reapr-Sapelo2|REAPR]] || 1.0.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MultiLoc2]] || 26-10-2009 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[RECON-Sapelo2|RECON]] || 1.08 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MultiMappingCounter-Sapelo|MultiMappingCounter]] || 21-09-2017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[RedDog-Sapelo2|RedDog]] || 1beta.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MultiSplice]] || 0.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Redundans-Sapelo2|Redundans]] || 0.14a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MUMmer-Sapelo|MUMmer]] || 3.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[RepeatExplorer-TAREAN-Sapelo2|RepeatExplorer-TAREAN]] || 11/09/2018 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MUMmer]] || 3.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[RepeatMasker-Sapelo2|RepeatMasker]] || 4.0.5, 4.0.7, 4.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MUMPS]] || 4.10.0 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[RepeatMasker-Teaching|RepeatMasker]] || 4.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Repeatmodeler-Sapelo2|Repeatmodeler]] || 1.0.11, 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MUSCLE-Sapelo|MUSCLE]] || 3.8.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[RepeatModeler-Teaching|RepeatModeler]] || 1.0.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[RepeatScout-Sapelo2|RepeatScout]] || 1.05 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MUSCLE]] || 3.8.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[RepeatScout-Teaching|RepeatScout]] || 1.05 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[REPET-Sapelo2|REPET]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MVFtools-Sapelo|MVFtools]] || 10112017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[RESCRIPt-Sapelo2|RESCRIPt]] || 20200805 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MyScanACE]] || 04232012 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[RevBayes-Sapelo2|RevBayes]] || 1.0.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MuTect-Sapelo|MuTect]] || 1.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[RevBayes-Teaching|RevBayes]] || 1.0.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[RGAugury-Sapelo2|RGAugury]] || 20191115 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[MuTect]] || 1.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[rjags-Sapelo2|rjags]] || 4.6 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | <span id="N"></span>[[NAMD-Sapelo|NAMD]] || 2.11 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[RMBlast-Sapelo2|RMBlast]] || 2.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NAMD]] || 2.9 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Rmpi-Sapelo2|Rmpi]] || 0.6-6 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NCBI Blast-Sapelo|NCBI Blast]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[RNAmmer-Sapelo2|RNAmmer]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NCBI Blast]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[RNAz-Sapelo2|RNAz]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NCBI Blast +-Sapelo|NCBI Blast +]] || 2.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Roary-Sapelo2 |Roary]] || 3.12.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NCBI Blast +]] || 2.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Rosetta-Sapelo2 |Rosetta]] || 2017.45.59812, 2019.47.61047 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ncbi blast parsers]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[RSEM-Sapelo2 |RSEM]] || 1.3.0, 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ncbi_toolkit]] || 12.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[RSeQC-Sapelo2 |RSeQC]] || 3.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NETCDF-Sapelo|NETCDF]] || 3.6.3, 4.1.3, 4.3.2 ||[[:Category:Library|Library]]|| [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Rstudio-Sapelo2|Rstudio]] || 1.1.463, 1.2.5033 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NETCDF]] || 3.6.3, 4.1.3 ||[[:Category:Library|Library]]|| [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Ruby-Sapelo2|Ruby]] || 2.5.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[netCDF4-python]] || 1.0.5 ||[[:Category:Library|Library]]|| [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[runBNG-Sapelo2|runBNG]] || 1.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[netlogo]] || 5.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Sailfish-Sapelo2|Sailfish]] || 0.10.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Newbler-Sapelo|Newbler]] || 2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="S"></span>[[Sage-Sapelo2|Sage]] || 8.0, 9.0, 9.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Newbler]] || 2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Salmon-Sapelo2|Salmon]] || 0.8.2, 0.10.2, 0.13.1, 0.14.1, 1.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Newick-utils]] || 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SalmonTools-Sapelo2|SalmonTools]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[a5-miseq | ngopt]] || 20140604 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SALSA-Sapelo2|SALSA]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ngsplot]] || 2.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[sambamba-Sapelo2|sambamba]] || 0.6.6, 0.6.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NGS-QC-Toolkit-Sapelo|NGS-QC Toolkit]] || 2.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[samblaster-Sapelo2|samblaster]] || 0.1.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NGS QC Toolkit]] || 2.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SAMtools-Sapelo2|SAMtools]] || 0.1.19, 1.1, 1.3.1, 1.6, 1.9, 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Ngsutils-Sapelo |Ngsutils]] || 0.5.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[SAMtools-Teaching|SAMtools]] || 0.1.20, 1.9, 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Ngsutils]] || 0.5.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SANN-Sapelo2|SANN]] || 20190528 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NH PhyloBayes]] || 0.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[sbt-Sapelo2|sbt]] || 1.1.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[nhPhyML]] || 01/2012 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[scala-Sapelo2|scala]] || 2.12.4 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NovelSeq]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[scikit-image-Sapelo2|scikit-image]] || 0.13.1, 0.14.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NovoAlign]] || 2.07.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Scoary-Sapelo2|Scoary]] || 1.6.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NPUTE]] || v1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SCons-Sapelo2|SCons]] || 2.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[nseg]] || 04182013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SCOTCH-Sapelo2|SCOTCH]] || 6.0.4 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[numexp]] || 1.4.2 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[scram-Sapelo2|scram]] || 0.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NWCHEM-Sapelo|NWCHEM]] || 6.5 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[screen_assembly-Sapelo2|screen_assembly]] || 1.2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NWCHEM]] || 6.3.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SeaDAS-Sapelo2|SeaDAS]] || 7.5.3 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NxTrim-Sapelo|NxTrim]] || v0.3.2-alpha || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[seaview-Sapelo2|seaview]] || 4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[NxTrim]] || 0.3.1-alpha || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[selscan-Sapelo2|selscan]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | <span id="O"></span>[[Oases]] || 0.2.02, 0.2.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Seq-Gen-Sapelo2|Seq-Gen]] || 1.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Octave-Sapelo|Octave]] || 4.0.3 || [[:Category:Other|Other]], [[:Category:Programming|Programming]], [[:Category:Graphics|Graphics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[SeqKit-Sapelo2|SeqKit]] || 0.10.1, 0.10.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[OligoArray]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[SeqKit-Teaching|SeqKit]] || 0.10.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[seqqs-Sapelo2|seqqs]] || 20140225 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[OligoArrayAux]] || 3.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[seqtk-Sapelo2|seqtk]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Oligotyping-Sapelo|Oligotyping]] ||2.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[SGA-Sapelo2|SGA]] || 0.10.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Oligotyping]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Shannon-Sapelo2|Shannon]] || 20190826 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[opal]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[shapeit-Sapelo2|shapeit]] || v2.r904 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Open Babel]] || 2.3.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Shasta-Sapelo2|Shasta]] || 0.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[OpenBUGS-Sapelo|OpenBUGS]] || 3.2.3 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[ShortStack-Sapelo2|ShortStack]] || 3.8.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[OpenBUGS]] || 3.2.2 || [[:Category:Statistics|Statistics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Sibelia-Sapelo2|Sibelia]] || 3.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[OpenCL]] || 1.0, 1.1 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SICER-Sapelo2|SICER]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[OpenCV-Sapelo|OpenCV]] || 2.4.13.3, 3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[SICERpy-Sapelo2|SICERpy]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[OpenCV]] || 2.3.1, 2.4.4 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Sickle-Sapelo2|Sickle]] || 1.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[OpenSees]] || 2015.02.26 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SignalP-Sapelo2|SignalP]] || 4.1f || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[opera-Sapelo|opera]] || 2.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Silix-Sapelo2|Silix]] || 1.2.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[opera]] || 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SimLoRD-Sapelo2|SimLoRD]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Oqtans]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SINE_Scan-Sapelo2|SINE_Scan]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ORCA-Sapelo | ORCA]] || 3.0.3, 4.0.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[slda-Sapelo2|slda]] || 0.1.6 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ORCA]] || 3.0.3 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[smoke-Sapelo2|smoke]] || 4.5 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Orthagogue]] || 1.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Smoove-Sapelo2|Smoove]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[OrthoFiller-Sapelo|OrthoFiller]] || 1.1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[SMRTLINK-Sapelo2|SMRTLINK]] || 5.1.0.26412, 6.0.0.47841, 7.0.1.66975, 8.0.0.79519 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[OrthoFinder-Sapelo|OrthoFinder]] ||1.1.8|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[SMRTLINK-Teaching|SMRTLINK]] || 5.0.1.9585, 5.1.0.26412 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Smudgeplot-Sapelo2|Smudgeplot]] || 0.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[OrthoFinder]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Snakemake-Sapelo2|Snakemake]] || 5.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[OrthoMCL]] || 2.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SNAP-Zoe-Sapelo2|SNAP-Zoe]] || 20060728 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[OSPREY]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[SNAP-Zoe-Teaching|SNAP-Zoe]] || 20060728 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Sniffles-Sapelo2|Sniffles]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | <span id="P"></span>[[p4]] || r231 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SnoReport-Sapelo2|SnoReport]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[p7zip]] || 9.20.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Snippy-Sapelo2|Snippy]] || 4.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[wgs | PacBioToCA]] || 8.2beta-binary || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SNP-ML-Sapelo2|SNP-ML]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[pagan]] || 0.39 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[snpEff-Sapelo2|snpEff]] || 4.3t || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[pagit]] || v1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[snpEff-Teaching|SnpEff]] || 4.3t || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[SNPhylo-Sapelo2|SNPhylo]] || 20160204 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Pairfq]] || 0.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[snp-sites-Sapelo2|snp-sites]] || 2.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[palfinder-Sapelo | palfinder]] || 0.02.04 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[SOAPaligner-Sapelo2 |SOAPaligner]] || 2.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Paml-Sapelo|paml]] || 4.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[SOAPdenovo2-Sapelo2|SOAPdenovo2]] || r240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PAML]] || 4.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[SOAPdenovo2-Teaching|SOAPdenovo2]] || r240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[somaticseq-Sapelo2|somaticseq]] || 3.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[pandas-Sapelo | pandas]] || 0.16.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[SOP-GPU-Sapelo2|SOP-GPU]] || 20180404 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[pandaseq]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SortMeRNA-Sapelo2|SortMeRNA]] || 2.1, 3.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Papara_nt]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SoX-Sapelo2|SoX]] || 14.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ParaFly-Sapelo|ParaFly]] || 0.1.0 || [[:Category:utility|utility]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[SPAdes-Sapelo2|SPAdes]] || 3.11.1, 3.12.0, 3.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ParMETIS]] || 3.2.0, 4.0.3 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[SPAdes-Teaching|SPAdes]] || 3.11.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[spams-Sapelo2|spams]] || 2.6.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Paradigm]] || 0.1-9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Spanki-Sapelo2|Spanki]] || 0.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Paradigmshift]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Spark-Sapelo2|Spark]] || 2.2.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Parseq]] || 02 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Speciesprimer-Sapelo2|Speciesprimer]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ParseRNAseq]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SpeedSeq-Sapelo2|SpeedSeq]] || 0.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PartitionFinder]] || 2.0.0-pre11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Spine-Sapelo2|Spine]] || 0.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PASA]] || 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SpliceGrapher-Sapelo2|SpliceGrapher]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PASHA]] || 1.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Splitstree4-Sapelo2|Splitstree4]] || 4.16.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PASTA-Sapelo|PASTA]] || 1.6.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[SPM-Sapelo2|SPM]] || 12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PASTA]] ||1.6.4|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SRAToolKit-Sapelo2 |SRAToolKit]] || 2.8.2-1, 2.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PatMaN]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[sRNAWorkbench-Sapelo2|sRNAWorkbench]] || 4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Paup-Sapelo|Paup]] || 4a147 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[SSAHA2-Sapelo2 |SSAHA2]] || 2.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[pbh5tools]] || 0.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[SSPACE-longread-Teaching|SSPACE-longread]] || 1-1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- |
| | | [[SSPACE-STANDARD-Teaching|SSPACE-STANDARD]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[SSPACE-Sapelo2|SSPACE]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PBSuite-Sapelo | PBSuite]] || 15.8.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Stacks-Sapelo2|Stacks]] || 1.48, 2.2, 2.3, 2.3b, 2.3d, 2.3e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PBSuite]] || 15.2.20 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Stacks-Teaching|Stacks]] || 2.0, 1.48 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Stampy-Sapelo2|Stampy]] || 1.0.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Peakranger-Sapelo|Peakranger]] || 1.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[STAR-Fusion-Sapelo2|STAR-Fusion]] || 1.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PEAR]] || 0.9.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[STAR-Sapelo2|STAR]] || 2.5.3a, 2.6.0c, 2.6.1c, 2.7.1a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PEAR-Sapelo|PEAR]] || 0.9.10-src || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[STAR-Teaching|STAR]] || 2.5.3a, 2.6.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[StrAuto-Sapelo2|StrAuto]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PePr-Sapelo|PePr]] || 1.1.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[StringTie-Sapelo2|StringTie]] || 1.3.3, 1.3.4d, 2.0.3, 2.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Perl-Sapelo|Perl]] || 5.24.0-thread || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[StringTie-Teaching|StringTie]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Perl]] || 5.14.1 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Structure-Sapelo2|Structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[perM]] || 0.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Structure-Teaching|Structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Subread-Sapelo2|Subread]] || 1.6.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PETSc-Sapelo|PETSc]] || 3.7.6 || [[:Category:Math_Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[SUNTANS-Sapelo2|SUNTANS]] || 20180305 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PETSc]] || 3.1-p8, 3.4.2 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Supernova-Sapelo2|Supernova]] || 2.0.1, 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Pfam_scan]] || 04282012 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SUPPA-Sapelo2|SUPPA]] || 2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[pftools]] || 2.3.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[SVDetect-Sapelo2|SVDetect]] || 0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PGDBG]] || 12.10 || [[:Category:Debugger|Debugger]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[svtools-Sapelo2|svtools]] || 0.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PGI Compilers-Sapelo|PGI Compilers]] || 2014 || [[:Category:Compiler|Compiler]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[SWIG-Sapelo2|SWIG]] || 3.0.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PGI Compilers]] || 2010, 2011, 2012, 2013, 2014 || [[:Category:Compiler|Compiler]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Synima-Sapelo2|Synima]] || 20181205 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PGPROF]] || 12.10 || [[:Category:Profiler|Profiler]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="T"></span>[[Tabix-Sapelo2|Tabix]] || 0.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PHASE-Sapelo |PHASE]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[TASSEL-Sapelo2|TASSEL]] || 5.2.44 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PHASE]] || 2.1.1.linux || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Tbl2asn-Sapelo2|Tbl2asn]] || 04172018, 03282019, 05012020 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[phaser-Sapelo |phaser]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[TCSF_IMRA-Sapelo2|TCSF_IMRA]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PhaseTank-Sapelo|PhaseTank]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[TensorFlow-models-Sapelo2|TensorFlow-models]] || 20180620 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[phobius]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[TensorFlow-Sapelo2|TensorFlow]] || 1.8.0, 1.10.1, 1.12.0, 1.14 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[phred/phrap/conced]] || || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Theano-Sapelo2|Theano]] || 0.9.0, 1.0.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Phyldog]] || || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[TigMint-Sapelo2|TigMint]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Phylip]] || 3.69 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[TMHMM-Sapelo2|TMHMM]] || 2.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PhyloGenie-Sapelo|PhyloGenie]] ||11082017|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[tmux-Sapelo2|tmux]] || 2.9 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PhyML-Sapelo|PhyML]] ||3.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Tombo-Sapelo2|Tombo]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PhyloBayes]] || 3.3b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Tophat-Sapelo2|Tophat]] || 2.1.0, 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PhyloBayes-MPI-Sapelo |PhyloBayes-MPI]] || 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[TopHat-Teaching|TopHat]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[torchvision-Sapelo2|torchvision]] || 0.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PhyloBayes-MPI]] || 1.3b, 1.4e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[TPP-Sapelo2|TPP]] || 5.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PhyloNet-Sapelo |PhyloNet]] || 3.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[tqdm-Sapelo2|tqdm]] || 4.43.0, 4.44.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PhyloNet]] || 3.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[TransDecoder-Sapelo2|TransDecoder]] || 2.1.0, 5.3.0, 5.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[phyluce-Sapelo |phyluce]] || 1.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Transposome-Sapelo2|Transposome]] || 0.12.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PhyML-Sapelo|PhyML]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Transrate-Sapelo2|Transrate]] || 1.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PHYML]] || 20110919 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Transrate-Sapelo2|Transrate]] || 1.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[picard-Sapelo |picard]] || 2.1.1, 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[TreeMix-Sapelo2|TreeMix]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[picard]] || 1.137 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[TreeTime-Sapelo2|TreeTime]] || 0.6.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[picrust-Sapelo|picrust]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[trimAl-Sapelo2|TrimAl]] || 1.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[picrust]] || 1.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Trimmomatic-Sapelo2|Trimmomatic]] || 0.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[pigz-Sapelo|pigz]] || 2.3.4 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Trimmomatic-Teaching|Trimmomatic]] || 0.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Trim_Galore-Sapelo2|Trim_Galore]] || 0.4.5, 0.6.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[pileup]] || 0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[Trinity-Sapelo2|Trinity]] || r20140717, 2.5.1, 2.6.6, 2.8.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Pilon-Sapelo|Pilon]] || 1.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Trinity-Teaching|Trinity]] || 2.6.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Trinotate-Sapelo2|Trinotate]] || 3.1.1, 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[pindel]] || 0.2.4t || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[tRNAscan-SE-Sapelo2|TRNAscan-SE]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[pIRS-Sapelo|pIRS]] || 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="U"></span>[[UCLUST-Sapelo2|UCLUST]] || 1.2.22q || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Pitchfork-Sapelo|Pitchfork]] || 09272017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[ucsc-Sapelo2|ucsc]] || 359 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[pknotsRG]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[UMI-tools-Sapelo2|UMI-tools]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[platanus]] || 1.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[UPP-Sapelo2|UPP]] || 3.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[platypus-Sapelo|platypus]] || 0.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[USEARCH-Sapelo2|USEARCH]] || 10.0.240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PLEK-Sapelo|PLEK]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Unicycler-Sapelo2|Unicycler]] || 0.4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[plink-Sapelo|plink]] || 1.07, 1.9-beta3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="V"></span>[[VarScan-Sapelo2|VarScan]] || 2.4.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[plink]] || 1.07, 1.9-beta3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[VCF-kit-Sapelo2|VCF-kit]] || 0.1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PLUMED-Sapelo|PLUMED]] || 2.3.3 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[vcf2diploid-Sapelo2|vcf2diploid]] || 0.2.6a || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[popbam]] || 0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[vcf2maf-Sapelo2|vcf2maf]] || 20200520 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[poretools-Sapelo|poretools]] || 0.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[vcf2phylip-Sapelo2|vcf2phylip]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[portaudio-Sapelo|portaudio]] || 19 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[vcflib-Sapelo2|vcflib]] || 20180410 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[prank]] || 100802 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[VCFtools-Sapelo2|VCFtools]] || 0.1.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PRATT-Sapelo|PRATT]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[VCFtools-Teaching|VCFtools]] || 0.1.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[Velvet-Sapelo2|Velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[prep-chem-src-Sapelo|prep-chem-src]] || 1.5 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[Velvet-Teaching|Velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[VelvetOptimiser-Sapelo2|VelvetOptimiser]] || 2.2.5, 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Primer3-Sapelo | Primer3]] || 2.0.0-alpha || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[ViennaRNA-Sapelo2|ViennaRNA]] || 2.4.3, 2.4.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Primer3]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[ViewBS-Sapelo2|ViewBS]] || 0.1.7, 0.1.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PRINSEQ-Sapelo|PRINSEQ]] || 0.20.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[Vmatch-Sapelo2|Vmatch]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PRINSEQ]] || 0.20.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[VSEARCH-Sapelo2|VSEARCH]] || 2.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ProbABEL-Sapelo|ProbABEL]] || 0.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="W"></span>[[WGS-Sapelo2|WGS]] || 8.3rc2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[prodigal-Sapelo|Prodigal]] ||2.6.3|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[WASP-Sapelo2|WASP]] || 0.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[proovread-Sapelo | proovread]] || 2.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[WebLogo-Sapelo2|WebLogo]] || 3.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[proovread]] || 2.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[WEKA-Sapelo2|WEKA]] || 3.8.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Prokka-Sapelo|Prokka]] || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[WPS-Sapelo2|WPS]] || 3.8 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Prokka]] || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[WPS-Teaching|WPS]] || 3.8 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[WRF-Chem-Sapelo2|WRF-Chem]] || 3.6.1, 3.8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[protobuf-Sapelo|protobuf]] || 2.4.1, 2.6.1, 3.0.0-beta1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | | [[WRF-Fire-Sapelo2|WRF-Fire]] || 20170221 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[protobuf]] || 2.6.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[WRF-Sapelo2|WRF]] || 3.6.1, 3.8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Prottest3-Sapelo|Prottest3]] || 3.4.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <!-- | [[WRF-Teaching|WRF]] || 3.8 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[Prottest3]] || 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | [[WRFDA-Teaching|WRFDA]] || 3.8 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| | |- --> |
| | | [[WU Blast-Sapelo2|WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[psmc]] || 0.6.4-r33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="X"></span> <!-- [[xdot-Teaching|xdot]] || 1.1 || [[:Category:Graphics|Graphics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[ptRNApred]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | --> [[xforms-Sapelo2|xforms]] || 1.2.4 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[PuMA]] || 0.904 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]] | | | <span id ="Y"></span>[[YASRA-Sapelo2|YASRA]] || 2.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] |
| |- | | |- |
| | [[pybedtools-Sapelo|pybedtools]] || 09/22/2016 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[pyDNase-Sapelo|pyDNase]] ||0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[pyfasta-Sapelo|pyfasta]] ||0.5.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[pyfasta]] ||0.5.2|| [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[pydev]] || 3.3.3 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[pyDNase]] || 0.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[pymol]] || 1.8.2 || [[:Category:Other|Other]], [[:Category:Graphics|Graphics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[pynast]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[PyNIO]] || 1.4.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[pyRAD-Sapelo|pyRAD]] || 3.0.64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[pyRAD]] || 3.0.61 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[pysam]] || 0.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[PyTables]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[pythonlzo-Sapelo|Pythonlzo]] || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Python-Sapelo | Python]] || 2.6.6, 2.7.8, 2.7.13, 3.4.3, 3.5.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Python]] || 2.4.3, 2.7.2, 2.7.8, 3.3.0. 3.4.0 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[PyTorch-Sapelo|PyTorch]] || 0.1.9, 0.1.11 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | <span id="Q"></span>[[Qiime-Sapelo|Qiime]] || 1.9.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| |[[Qiime]] || 1.7.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[qeseq]] || 0.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[QT]] || 4.8.5 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[QTL Cartographer]] || 1.17j || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Quake-Sapelo|Quake]] ||0.3|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[quake]] || 0.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Qualimap2-Sapelo|Qualimap2]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[QUAST-Sapelo|QUAST]] ||4.5|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[quast]] || 3.1, 4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Quantum Espresso-Sapelo|Quantum Espresso]] || 5.4.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Quantum Espresso]] || 4.3.2, 5.0.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | <span id="R"></span>[[R-Sapelo | R]] || 3.1.2, 3.2.1, 3.2.3, 3.3.1|| [[:Category:Statistics|Statistics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[R]] || 2.14.0, 2.15.0, 2.15.2, 3.0.0, 3.0.2, 3.0.3, 3.1.0, 3.1.1, 3.2.0, 3.2.3, 3.3.0, 3.3.2 || [[:Category:Statistics|Statistics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RACA]] || 0.9.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[racon-Sapelo |racon]] || 20161214 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[radcap]] || 1.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RADnome]] || 0.0.1-7-25 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Randfold-Sapelo|Randfold]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RANDFOLD]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RAPSearch2-Sapelo |RAPSearch2]] || 2.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RAPSearch2]] || 2.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RATT-Sapelo|RATT]] || 10052017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RATT]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RAxML-Sapelo | RAxML]] || 8.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RAxML]] || 8.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RAxML-Light]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Ray-Sapelo | Ray]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RCCBatchBlast]] || 5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RCCBatchBlastPlus]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RDPTools-Sapelo|RDPTools]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[READemption-Sapelo|READemption]] || 0.3.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RED-Sapelo|RED]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Reapr-Sapelo|REAPR]] || 1.0.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[REAPR]] || 1.0.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RECON]] || 1.08 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[REPCLASS-Sapelo|REPCLASS]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[repdenovo-Sapelo|repdenovo]] || 02232017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RepeatExplorer-Sapelo|RepeatExplorer]] || 02/2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RepeatExplorer]] || 02/2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RepeatExplorer-TAREAN-Sapelo|RepeatExplorer-TAREAN]] || 12/13/2016, 01/10/2017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Repeatmasker-Sapelo|Repeatmasker]] || 4.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Repeatmasker]] || 4.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Repeatmodeler-Sapelo|Repeatmodeler]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Repeatmodeler]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Reptile]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RepeatScout]] || 1.05 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RES-Scanner-Sapelo|RES-Scanner]] || 20170726 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Revbayes-Sapelo|Revbayes]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[riboPicker]] || 0.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RIP]] || 4 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RITA]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RMBlast]] || 2.2.27 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Rmpi-Sapelo|Rmpi]] || 0.6-6 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Rmpi]] || 0.5-9, 0.6-1, 0.6-3, 0.6-5, 0.6-6 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RNA-SeQC]] || 1.1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RNAmmer-Sapelo|RNAmmer]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RNAmmer]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RNAple-Sapelo|RNAple]] ||0.2|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RNAprof]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[rnaQUAST]] || 0.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RNAshapes]] || 2.1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RNAz]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[rnnotator]] || 2.4.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Roary-Sapelo |Roary]] || 3.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Roche]] || 2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Rockhopper]] || 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RogueNaRok]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Roms_tools-Sapelo |Roms_tools]] || 3.1.1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Rosetta-Sapelo |Rosetta]] || 2016.15.58628, 2017.26.59567 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[ROOT]] || 5.34.09 || [[:Category:Library|Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[rpy]] || 1.0.3 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[rpy2]] || 2.4.3 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RSAT | RSAT (RSA-tools)]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RSEM-Sapelo |RSEM]] || 1.2.20 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RSEM]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RSEG]] || 0.4.8NC || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RSeQC-Sapelo|RSeQC]] || 2.6.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RSeQC]] || 2.6.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[rspr]] || 1.2.2 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Ruby-Sapelo|Ruby]] ||2.4.2|| [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[RUM]] || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | <span id="S"></span>[[Sabre]] || 02/03/2017 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| |[[Sage-Sapelo|Sage]] || 7.4, 8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| |[[Sage]] || 6.3 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[sailfish]] || 0.6.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Salmon-Sapelo|Salmon]] || 0.6.1-pre || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[sam2pairwise-Sapelo|sam2pairwise]] || 1.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[sambamba]] || 0.4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[samblaster]] || 0.1.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[samtools-Sapelo|samtools]] || 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[samtools]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SATé-Sapelo|SATé]] || 2.2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SATé]] || 2.2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[sbt-Sapelo|sbt]] || 0.13.12, 1.0.2 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[sbt]] || 0.13.9 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[scala-Sapelo|scala]] || 2.10.6, 2.11.7, 2.12.0-RC1, 2.12.1 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[scala]] || 2.11.7, 2.12.0-M3 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[ScaLAPACK-Sapelo|ScaLAPACK]] || 2.0.2 || [[:Category:Math_Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[ScaLAPACK]] || 2.0.2 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[scalpel-Sapelo|scalpel]] || 0.5.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Scripture-Sapelo| Scripture ]] || 3/20/2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Scripture]] || 3/20/2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SEAStAR]] || 0.4.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[segemehl]] || 0.1.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Seq-Gen-Sapelo|Seq-Gen]] || 1.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[seqMINER]] || 1.3.3e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[seqtk-Sapelo|seqtk]] || 1.0-r63-dirty || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[seqtk]] || 1.0-r63-dirty || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SEQuel]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SGA-Sapelo|SGA]] ||0.10.15|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[shapeit-Sapelo|shapeit]] || v2.r837 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SHE-RA]] || 012012 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SHORE-Sapelo|SHORE]] || 0.9.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SHORE]] || 0.9.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SHOREmap]] || 2.0, 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[sicer-Sapelo|sicer]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[sicer]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[sickle-Sapelo|sickle]] || 1.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[sickle]] || 1.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SigHunt]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| |-
| |
| | [[SignalIP]] || 4.1c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SInC-simulator-Sapelo|SInC-simulator]] || 2017.06.06 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SINE_Scan-Sapelo|SINE_Scan]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SISRS]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SiZer]] || 07022012 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[slclust]] || 04282012 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[slda-Sapelo|slda]] || 0.1.4 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SMRT-Analysis-Sapelo|SMRT-Analysis]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SMRT-Analysis]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[snakemake-Sapelo|snakemake]] || 4.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SNAP]] || 2010-7-28 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SNAPP]] || 1.1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SnoReport]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[snow]] || 0.3-8, 0.3-10, 0.3-12, 0.3-13 || [[:Category:Statistics|Statistics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[snowhite]] || 1.1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[snpEff]] || 4.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SNPhylo-Sapelo|SNPhylo]] || 20160204 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SNPhylo]] || 20140701 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Soap2]] || 2.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SOAPaligner-Sapelo | SOAPaligner]] || 2.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Soap2 | SOAPaligner]] || 2.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SOAPdenovo]] || 1.05 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SOAPdenovo-trans]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SOAPdenovo2-Sapelo|SOAPdenovo2]] || r240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SOAPdenovo2]] || r223, r240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SOAPsnp]] || 1.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SomaticCall]] || 42811 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SortMeRNA-Sapelo|SortMeRNA]] || 2.1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Spark-Sapelo|Spark]] || 1.6.0, 2.0.1, 2.2.1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[spimap]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SPAdes-Sapelo|SPAdes]] || 3.7.0, 3.8.0, 3.9.0, 3.10.0, 3.11.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SPAdes]] || 3.6.2, 3.8.0, 3.9.0, 3.10.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SparseAssembler]] || 2012/06/15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SpeedSeq-Sapelo|SpeedSeq]] || 052317 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Splitaake]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[spolpred]] || 09/10/2013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[sprai]] || 0.9.9.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[sprspace]] || 1.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Sputnik]] || 03/20/2013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SQUID-Sapelo|SQUID]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SRAToolKit-Sapelo |SRAToolKit ]] || 2.8.2-1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SRA]] || 2.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SSAHA2]] || 2.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SSAKE]] || v3-8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SSPACE-Sapelo|SSPACE]] ||2.1.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SSPACE]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[ssr_pipeline]] ||0.95 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[stacks-Sapelo|stacks]] || 1.40, 1.44, 2.0beta2, 2.0beta7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[stacks]] || 1.35 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[STAMP-Sapelo | STAMP]] || 2.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[STAMPY-Sapelo | STAMPY]] || 1.0.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[STAMPY]] || 1.0.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[STAR-Sapelo|STAR]] || 2.5.3a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[STAR]] || 2.4.1c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[STEM]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[STEM-hy]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[strauto]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[StringTie-Sapelo|StringTie]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[StringTie]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[structure-Sapelo|structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[structurama]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[subread-Sapelo|subread]] || 1.5.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[subread]] || 1.4.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[suma_package]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SUNTANS-Sapelo|SUNTANS]] || 20150923 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SUNTANS]] || 697-trunk, 784 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SuperLU]] || 4.3 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SuperLU_dist]] || 3.3 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SUPPA-Sapelo|SUPPA]] || 06122015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SVDetect-Sapelo|SVDetect]] || 0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SVDetect]] ||0.7|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SVDquartets]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SVMlight-Sapelo|SVMlight]] || 6.02 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[SWIG]] || 3.0.2 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | <span id="T"></span>[[T-Coffee-Sapelo|T-Coffee]] || 11.00.8cbe486 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[T-REX-Sapelo|T-REX]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[tabix]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TagCleaner]] || 0.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TRF-Sapelo|Tandem Repeats Finder]] || 4.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TRE |Tandem Repeats Finder]] || 4.07b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TAPDANCE]] || 03/20/2013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[tassel]] || 5.2.20 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[tax2tree]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TEClass]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TEPID-Sapelo|TEPID]] || 0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TEMP]] || 1.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[tesseract-Sapelo|tesseract]] || 3.04.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TEToolkit]] || 1.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[tgicl]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Theano-Sapelo|Theano]] || 0.8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Theano]] || 0.8.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TIGER]] || 1.02 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TIGRA-Sapelo|TIGRA]] || 0.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[tmhmm]] || 2.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[cDNA_Cupcake-Sapelo|TOFU2]] || 3.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[tophat-Sapelo|tophat]] || 2.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[tophat]] || 2.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[trans-abyss]] || 1.4.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TransDecoder-Sapelo|TransDecoder]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TransDecoder]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Transposome-Sapelo|Transposome]] || 0.09.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TransposonPSI-Sapelo|TransposonPSI]] || 08222010 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Transrate-Sapelo|Transrate]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Tracer]] || v 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TRE]] || 4.07b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TreeFix]] || 1.1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TreeFix-DTL]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[treemix]] || 1.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Triangle]] || 1.6 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[trimal]] || 1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TrimGalore-Sapelo|TrimGalore]] ||0.4.4|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[trimmomatic-Sapelo|trimmomatic]] ||0.36|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[trimmomatic]] || 0.32 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TrimGalore-Sapelo|TrimGalore]] || 4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[TrimGalore]] || 0.3.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[trimreads]] || 07232013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Trinity-Sapelo|Trinity]] || 2.06 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Trinity]] || 2.06 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Trinotate]] || 3.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[tRNAscan-SE-Sapelo|TRNAscan-SE]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[tRNAscan-SE]] || 1.23, 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[UCHIME-Sapelo|UCHIME]] || 4.2.40 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | <span id="U"></span>[[UClust]] || 1.2.22q || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[UNAFold]] || 3.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[UPP]] || 2.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[usearch-Sapelo|usearch]] ||10.0.240|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[usearch]] || 7.0.1090_i86 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[UCSC-Sapelo|UCSC]] || 06-17-2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[UCSC]] || 07-11-2014 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | <span id="V"></span>[[varscan]] || 2.3.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Vcflib-Sapelo|vcflib]] || 1.0.0-rc1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[vcftools-Sapelo|vcftools]] || 0.1.12b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[vcftools]] || 0.1.12a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[velvet-Sapelo|velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[velvet]] || 1.2.08, 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[VelvetOptimiser-Sapelo|VelvetOptimiser]] || 2.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[VelvetOptimiser]] || 2.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[ensembl-tools | VEP]] || 76 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[VICUNA]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[ViennaRNA-Sapelo|ViennaRNA]] ||2.1.3|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[ViennaRNA]] || 1.8.5, 2.1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Viromescan-Sapelo|viromescan]] || 05292017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[virtualenv]] || 1.8.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[VMD]] || 1.9.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[voxnet-Sapelo|voxnet]] || 0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[voxnet]] || 0.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[vsearch-Sapelo|vsearch]] || 1.10.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[vsearch]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[VTK]] || 5.8.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | <span id="W"></span>[[webLogo]] || 3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[weka]] || 3.6.10 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[wgs-Sapelo|wgs]] || 8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[wgs]] || 8.2beta-binary || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[whatshap-Sapelo|whatshap]] || 0.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[wigToBigWig]] || v4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[WinHap-Sapelo|WinHap]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[WISE2]] || 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[WPS-Sapelo|WPS]] || 3.6, 3.6.1, 3.7, 3.8 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[WPS]] || 3.4.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[WRF-Sapelo|WRF]] || 3.6, 3.6.1, 3.7, 3.8 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[WRF]] || 3.4.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[WRF-Chem-Sapelo|WRF-Chem]] || 3.6.1, 3.8 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[WU Blast-Sapelo|WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | <span id="X"></span> [[RDPTools-Sapelo|Xander_assembler]] || 7/12/2016 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[xgboost]] || 0.4a30 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[XP-CLR-Sapelo|XP-CLR]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Xscape]] || 11182014 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | <span id="Y"> </span>[[YAHA-Sapelo|YAHA]] || 0.1.83 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[YASRA-Sapelo|YASRA]] || 2.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[yasra]] || 2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[yt-Sapelo|yt]] || 3.2.3 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | <span id="Z"></span>[[Zbar-Sapelo|Zbar]] || 0.10 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[zlib-Sapelo|zlib]] || 1.2.5, 1.2.8 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| |
| |-
| |
| | [[Zorro]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| |
| <!--LIST END--> | | <!--LIST END--> |
| |-
| |
| |} | | |} |
| [[#top|Back To Top]] [[File:Up20.png|20px|link=#top]] | | [[#top|Back To Top]] [[File:Up20.png|20px|link=#top]] |
| [[Category:Zcluster]][[Category:Sapelo]] | | |
| | [[Category:Sapelo2]][[Category:Teaching]][[Category:Software]] |