Software-old: Difference between revisions

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Below is a partial list of software packages installed on Sapelo2, Teaching (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2/Teaching, along with a short description, please run the following command on Sapelo2/Teaching:
<pre class="gcommand">
module spider
</pre>
You can also use the command above to search for a specific application. For more information, please see [[Lmod]].
'''Note:''' Although we have not made individual software pages for the applications installed on on the Slurm test cluster (Sap2test), there are currently over 550 software packages installed there. For information on software installed there, please see [[Software on sap2test]].
==Installed Software List==
==Installed Software List==
Last updated '''{{REVISIONYEAR}}-{{REVISIONMONTH}}-{{REVISIONDAY2}}'''.
Last updated '''{{REVISIONYEAR}}-{{REVISIONMONTH}}-{{REVISIONDAY2}}'''.
'''Note:''' Click on the icons to the right of the column headings to sort the table.
'''Note:''' Click on the icons to the right of the column headings to sort the table.
[[#0|0-9]] [[#A|A]] [[#B|B]] [[#C|C]] [[#D|D]] [[#E|E]] [[#F|F]] [[#G|G]] [[#H|H]] [[#I|I]] [[#J|J]] [[#K|K]] [[#L|L]] [[#M|M]] [[#N|N]] [[#O|O]] [[#P|P]] [[#Q|Q]] [[#R|R]] [[#S|S]] [[#T|T]] [[#U|U]] [[#V|V]] [[#W|W]] [[#X|X]] [[#Y|Y]] [[#Z|Z]]
[[#0|0-9]] [[#A|A]] [[#B|B]] [[#C|C]] [[#D|D]] [[#E|E]] [[#F|F]] [[#G|G]] [[#H|H]] [[#I|I]] [[#J|J]] [[#K|K]] [[#L|L]] [[#M|M]] [[#N|N]] [[#O|O]] [[#P|P]] [[#Q|Q]] [[#R|R]] [[#S|S]] [[#T|T]] [[#U|U]] [[#V|V]] [[#W|W]] [[#X|X]] [[#Y|Y]] [[#Z|Z]]
{|  width="100%" border="1"  cellspacing="0" cellpadding="2" align="center"  class="wikitable sortable"
{|  width="100%" border="1"  cellspacing="0" cellpadding="2" align="center"  class="wikitable sortable"
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! scope="col" width="160px"| Category
! scope="col" width="160px"| Category
! scope="col" width="60px"| Cluster
! scope="col" width="60px"| Cluster
! scope="col" width="20px"|
! scope="col" width="20px"| Top
|-
<!--LIST BEGIN-->
<!--
| <span id ="0"></span>[[3D-DNA-sapelo2 |3D-DNA]] || 180922 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[3SEQ-Sapelo2 |3SEQ]] || 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[4p-Sapelo2 |4p]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="A"></span>[[ABySS-Sapelo2|ABySS]] || 1.9.0, 2.0.2, 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ADMIXTURE-Sapelo2|ADMIXTURE]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[aeneas-Sapelo2|aeneas]] || 1.7.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[AFNI-Sapelo2|AFNI]] || 17.3.05 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[AGAT-Sapelo2|AGAT]] || 0.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[AGEnt-Sapelo2|AGEnt]] || 0.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[AIM-HII-Sapelo2|AIM-HII]] || 0.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[albacore-Sapelo2|Albacore]] || 2.3.4-cp35 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[AlignGraph-Sapelo2|AlignGraph]] || 20180709 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[AlleleSeq_pipeline-Sapelo2|AlleleSeq_pipeline]] || 1.2a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ALLHiC-Sapelo2|ALLHiC]] || 0.8.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Allim-Sapelo2|Allim]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ALLMAPS-Sapelo2|ALLMAPS]] || 20190208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[AMBER-Sapelo2|AMBER]] || 14, 16, 18 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!-- | [[AMBER-Teaching|AMBER]] || 14 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!--
| [[AMOS-Sapelo2|AMOS]] || 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Anaconda2-Sapelo2|Anaconda2]] || 5.0.1, 2018.12, 2019.03 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Anaconda3-Sapelo2|Anaconda3]] || 5.0.1, 2018.12, 2019.03 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ANGEL-Sapelo2|ANGEL]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[annovar-Sapelo2|annovar]] || 2017Jul16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ANSYS-Sapelo2|ANSYS]] || 18.2, 19.2 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[antiSMASH-Sapelo2|antiSMASH]] || 4.2.0, 5.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[anvi'o-Sapelo2|anvi'o]] || 4, 5.1, 5.3, 5.4, 6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Apollo-Sapelo2|Apollo]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Aragorn-Sapelo2|Aragorn]] || 1.2.38 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Arlequin-Sapelo2|Arlequin]] || 3.5.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ART-Sapelo2|ART]] || 20160605 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| <span id="0"></span>[[454 Software]] || || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ARCS-Sapelo2|ARCS]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| <span id="A"></span>[[a5-miseq]] || 20140604 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Artemis-Sapelo2|Artemis]] || 17.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[aaarf]] || 1.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
-->
<!-- | [[Artemis-Teaching|Artemis]] || 17.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!--
| [[ASTRAL-Sapelo2|ASTRAL]] || 5.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ABINIT]] || 6.12.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ATK-Sapelo2|ATk]] || 2.22.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ABySS-Sapelo|ABySS]] || 1.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[ATLAS-Sapelo2|ATLAS]] || 3.10.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ABySS]] || 1.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[AUGUSTUS-Sapelo2|AUGUSTUS]] || 3.2.3, 3.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!-- | [[AUGUSTUS-Teaching|AUGUSTUS]] || 3.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!--
| [[AutoVOT-Sapelo2|AutoVOT]] || 0.93 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ACT]] || 03/27/2013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="B"></span> [[bam2fastx-Sapelo2|bam2fastx]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BamTools-Sapelo2|BamTools]] || 2.4.1, 2.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ADMIXTOOLS]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Barrnap-Sapelo2|Barrnap]] || 0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Admixture]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[basespace-cli-Sapelo2|basespace-cli]] || 0.9.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[AFNI]] || 2013.04.26 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Basset-Sapelo2|Basset]] || 20200107 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ALLPATHS-LG]] || 47907 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[BayesAss-Sapelo2|BayesAss]] || 3.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[AMBER-Sapelo|AMBER]] || 14 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[BayeScan-Sapelo2|BayeScan]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[AMBER]] || 11, 12, 14 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[bax2bam-Sapelo2|bax2bam]] || 0.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[amos]] || 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Bazel-Sapelo2|Bazel]] || 0.8.1, 0.11.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[AmpliconNoise]] || 1.25 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[BBMap-Sapelo2 |BBMap]] || 37.67, 38.73 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Anaconda-Sapelo|Anaconda]] || 2.2.0, 3-2.2.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[BCFtools-Sapelo2|BCFtools]] || 1.1, 1.3.1, 1.6, 1.8, 1.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Anaconda]] || 2.3.0, 3-2.2.0 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
-->
<!-- | [[BCFtools-Teaching|BCFtools]] || 1.3.1, 1.6, 1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!--
| [[bcgTree-Sapelo2|bcgTree]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Anduril]] || 1.2.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[bcl2fastq-Sapelo2|bcl2fastq]] || 2.20.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ANNOVAR]] || 2015Mar22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Beast-Sapelo2|Beast]] || 1.8.4, 1.10.1, 1.10.3, 1.10.4, 2.4.8pre, 2.4.8, 2.5.0, 2.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Apache-ant-Sapelo|apache-ant]] || 1.9.6 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[BEDOPS-Sapelo2|BEDOPS]] || 2.4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ARB]] || 6.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[BEDTools-Sapelo2|BEDTools]] || 2.17.0, 2.26.0, 2.28.0, 2.29.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!-- | [[BEDTools-Teaching|BEDTools]] || 2.26.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!--
| [[BerkeleyGW-Sapelo2|BerkeleyGW]] || 2.1 || [[:Category:Physics|Physics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Arlequin]] || 3.5.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Bioawk-Sapelo2|bioawk]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Aspera]] || 3.1.0.67054 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[BioKanga-Sapelo2|BioKanga]] || 21.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[AStalavista-Sapelo|AStalavista]] || 3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Biom-format-Sapelo2|Biom-format]] || 2.1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Atlas2]] || 1.4.3 r158 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[BionanoSolve-Sapelo2|BionanoSolve]] || 3.2.1-04122018, 3.2.2-08222018 3.3-10252018, 3.4-06042019 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[AUGUSTUS]] || 2.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[BioPerl-Sapelo2|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!-- | [[BioPerl-Teaching|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BioPython-Sapelo2|BioPython]] || 1.68 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Biopython-Teaching|Biopython]] || 1.75 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="B"></span>[[bam2fastq]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!--
| [[Bismark-Sapelo2|Bismark]] || 0.20.0, 0.22.1, 0.22.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!-- | [[Bismark-Teaching|Bismark]] || 0.22.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!--
| [[Bison-Sapelo2|Bison]] || 2.7, 3.0.2, 3.0.4 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Bamtools-Sapelo|Bamtools]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[BLASR-Sapelo2|BLASR]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Banjo]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[BLAST+-Sapelo2|BLAST+]] || 2.2.31, 2.6.0, 2.7.1, 2.9.0, 2.10.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[BLAST+-Teaching|BLAST+]] || 2.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
<!--
| [[BLAST-Sapelo2|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[BLAST-Teaching|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Batchsub]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[BLAT-Sapelo2|BLAT]] || 3.4, 3.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BayeScan]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[BlobTools-Sapelo2|BlobTools]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BBMap]] || 35.66 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Blosc-Sapelo2|Blosc]] || 1.12.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[bcl2fastq-Sapelo|bcl2fastq]] || 2.16.0.10  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[BOLT-LMM-Sapelo2|BOLT-LMM]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[bcl2fastq]] || 2.16.0.10  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Boost-Sapelo2|Boost]] || 1.54.0, 1.61.0, 1.63.0, 1.65.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[bcl2fastq-brwnj]] || 10262015  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Boto3-Sapelo2|Boto3]] || 1.9.14 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BEAST]] || 2.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[bowtie2-Sapelo2|bowtie2]] || 2.2.3, 2.3.3, 2.3.4.1, 2.3.4.2, 2.3.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BEDops-Sapelo|BEDops]] || 2.4.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Bowtie2-Teaching|Bowtie2]] || 2.3.5.1, 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BEDTools-Sapelo|BEDTools]] || 2.25.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Bowtie-Sapelo2|Bowtie]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BEDTools]] || 2.25.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Bracken-Sapelo2|Bracken]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BEST]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[braker-Sapelo2|braker]] || 2.0.5, 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[bfast]] || 0.7.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[BreakDancer-Sapelo2|BreakDancer]] || 1.4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[bppsuite|Bio++ Program Suite]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[breseq-Sapelo2|breseq]] || 0.34.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Bioconductor]] || 2.11, 2.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[BS-Seeker2-Sapelo2|BS-Seeker2]] || 2.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BioPerl-Sapelo|BioPerl]] || 1.6.923 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[BUSCO-Sapelo2|BUSCO]] || 2.0, 3.0.2, 4.0.5, 4.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BioPerl]] || 1.61 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[BUSCO-Sap2test|BUSCO]] || 4.0.5, 4.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sap2test|Sap2test]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[biopy]] || 0.1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[BUSCO-Teaching|BUSCO]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[BWA-Sapelo2|BWA]] || 0.7.15, 0.7.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BioPython]] || 1.64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[BWA-Teaching|BWA]] || 0.7.17, 0.7.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| <span id ="C"></span>[[Caffe-Sapelo2|Caffe]] || 04082018 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[biotoolbox]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[cactus-Sapelo2|cactus]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Bismark Bisulfite Mapper]] || 0.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[cairo-Sapelo2|cairo]] || 1.14.6, 1.14.10, 1.14.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BiSS]] || 0.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Canu-Sapelo2|Canu]] || 1.7, 1.7.1, 1.8, 1.9, 2.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BLAS]] || 3.0 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[canu-Teaching|Canu]] || 1.4, 1.5, 1.6, 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[CAP-miRSeq-Sapelo2|CAP-miRSeq]] || 05/20184 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BLASR]] || 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[CAP3-Sapelo2|CAP3]] || 03092015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Blat-Sapelo|Blat]] || 36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[cBar-Sapelo2|cBar]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Blat]] || 3.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[CD-HIT-Sapelo2|CD-HIT]] || 4.6.1-2012-08-27, 4.6.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BMGE]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[cDNA_Cupcake-Sapelo2|CDNA_Cupcake]] || 5.9, 7.2, 8.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Boost-Sapelo|Boost]] || 1.47.0, 1.57.0, 1.59.0 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[CDO-Sapelo2|CDO]] || 1.9.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Boost]] || 1.54.0 || [[:Category:Library|Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[CellProfiler-Sapelo2|CellProfiler]] || 3.1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[bowtie-Sapelo|bowtie]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Cellrange-Sapelo2|Cellrange]] || 3.0.1, 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[bowtie]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[CENSOR-Sapelo2|CENSOR]] || 4.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[bowtie2-Sapelo|bowtie2]] || 2.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[CFITSIO-Sapelo2|CFITSIO]] || 3.38 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[bowtie2]] || 2.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[CFOUR-Sapelo2|CFOUR]] || 1.2, 2.00-beta, 2.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BP&P]] || 2.2, 3, 3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[CGAL-Sapelo2|CGAL]] || 4.11 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[breakdancer]] || 1.1.2_2013_03_08 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Cgmaptools-Sapelo2|Cgmaptools]] || 0.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[bridger]] || 2014-12-01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Cgview_comparison_tool-Sapelo2|Cgview_comparison_tool]] || 2017.09.19 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[brownie]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[CheckM-Sapelo2|CheckM]] || 1.0.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BS Seeker]] || Dec 113 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Chimera-Sapelo2|Chimera]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BS Seeker2]] || Oct 30 2013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Chimera-Teaching|Chimera]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Chromosomer-Sapelo2|Chromosomer]] || 0.1.3, 0.1.4a0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BUCKy]] || 1.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Chromosomer-Teaching|Chromosomer]] || 0.1.4a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[circlator-Sapelo2|circlator]] || 1.5.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[bwa-Sapelo| Burrows-Wheeler Aligner (BWA)]] || 0.7.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Circos-Sapelo2|Circos]] || 0.69-6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Burrows-Wheeler Aligner (BWA)]] || 0.7.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Cleaveland4-Sapelo2|Cleaveland4]] || 4.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[bx-python]] || 06/24/2013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Click-Sapelo2|Click]] || 7.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="C"></span>[[cadaver]] || 0.23.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ClonalFrameML-Sapelo2|ClonalFrameML]] || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ClonalOrigin-Sapelo2|ClonalOrigin]] || 0.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Clust-Sapelo2|Clust]] || 1.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ClustAGE-Sapelo2|ClustAGE]] || 0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Clustal-Omega-Sapelo2|Clustal-Omega]] || 1.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ClustalW2-Sapelo2|ClustalW2]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CMake-Sapelo2|CMake]] || 3.0.0, 3.4.3, 3.5.2, 3.6.1, 3.6.2, 3.7.2, 3.8.0, 3.9.1, 3.9.5, 3.10.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CNIT-Sapelo2|CNIT]] || 2020-05-13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CNVnator-Sapelo2|CNVnator]] || 0.3.3, 0.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cogent-Sapelo2|Cogent]] || 3.5, 3.9, 6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Coinfinder-Sapelo2|Coinfinder]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CONCOCT-Sapelo2|CONCOCT]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Consed-Sapelo2|Consed]] || 29.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cooler-Sapelo2|cooler]] || 0.8.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CPLEX-Sapelo2|CPLEX]] || 12.6.3 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[crest-Sapelo2|crest]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CRISPResso-Sapelo2|CRISPResso]] || 1.0.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CUDA-Sapelo2|CUDA]] || 7.0.28, 7.5.18, 8.0.61, 8.0.61_375.26-GCC-5.4.0-2.26, 9.0.176, 9.1.85, 9.2.88, 10.0.130, 10.1.243 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cuDNN-Sapelo2|cuDNN]] || 7.0.4, 7.2.1.38, 7.4.2.24 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cufflinks-Sapelo2|Cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[Cufflinks-Teaching|Cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[cURL-Sapelo2|cURL]] || 7.49.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cutadapt-Sapelo2|cutadapt]] || 1.9.1, 1.14, 1.16, 2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cython-Sapelo2|Cython]] || 0.27.3, 0.28.5 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CythonGSL-Sapelo2|CythonGSL]] || 0.2.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cytoscape-Sapelo2|Cytoscape]] || 3.7.2, 3.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cytoscape-Teaching|Cytoscape]] || 3.7.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-  
|-  
| [[Cafe]] || 3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="D"></span>[[Dadi-Sapelo2|Dadi]] || 1.7.0, 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-  
|-
| [[Caffe-Sapelo|Caffe]] || 12.04.2015|| [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Danpos2-Sapelo2|Danpos2]] || 2.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-  
|-
| [[Caffe]] || 11.26.2014|| [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Darknet-Sapelo2|Darknet]] || 3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DAS_Tool-Sapelo2|DAS_Tool]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
| [[datamash-Sapelo2|datamash]] || 1.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DBG2OLC-Sapelo2|DBG2OLC]] || 20170208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[DBG2OLC-Teaching|DBG2OLC]] || 20170208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[DDocent-Sapelo2|DDocent]] || 2.7.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DDSCAT-Sapelo2|DDSCAT]] || 7.3.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[decontaMiner-Sapelo2|decontaMiner]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[deepTools-Sapelo2|deepTools]] || 3.0.2, 3.2.1, 3.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DeepVariant-Sapelo2|DeepVariant]] || 0.7.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Delft3d-Sapelo2|Delft3d]] || 20190610 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
| [[delineate-Sapelo2|delineate]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DendroPy-Sapelo2|DendroPy]] || 4.3.0, 4.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[detectMITE-Sapelo2|detectMITE]] || 20170425 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[detonate-Sapelo2|detonate]] || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DIAMOND-Sapelo2|DIAMOND]] || 0.8.31, 0.9.19, 0.9.22, 0.9.24, 0.9.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[DIAMOND-Teaching|DIAMOND]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[DISCOVARdenovo-Sapelo2|DISCOVARdenovo]] || 52488 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DIYABC-Sapelo2|DIYABC]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DiscoVista-Sapelo2|DiscoVista]] || 20190429 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Distruct-Sapelo2|Distruct]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DLCpar-Sapelo2|DLCpar]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Domainoid-Sapelo2|Domainoid]] || 20200127 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Doxygen-Sapelo2|Doxygen]] || 1.8.7, 1.8.11, 1.8.13 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[dRep-Sapelo2|dRep]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DSSP-Sapelo2|DSSP]] || 3.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DyNet-Sapelo2|DyNet]] || 2.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[DyNet-Teaching|DyNet]] || 2.0.3 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| <span id ="E"></span>[[EDGE-pro-Sapelo2|EDGE-pro]] || 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[eggNOG-Mapper-Sapelo2|EggNOG-Mapper]] || 1.0.3, 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Eigen-Sapelo2|Eigen]] || 3.2.3, 3.3.5 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[EIGENSOFT-Sapelo2|EIGENSOFT]] || 6.1.4, 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[EIGENSOFT-Teaching|EIGENSOFT]] || 6.1.4, 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[EMBOSS-Sapelo2|EMBOSS]] || 6.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[EMBOSS-Teaching|EMBOSS]] || 6.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[EMMAX-Sapelo2|EMMAX beta]] || beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Ensembl-VEP-Sapelo2|Ensembl-VEP]] || 20180914 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[EnTAP-Sapelo2|EnTAP]] || 0.8.4 beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[canu-Sapelo|canu]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[epic2-Sapelo2|epic2]] || 0.0.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CAP-miRSeq]] || 01/2014 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[EricScript-Sapelo2|EricScript]] || 0.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[cap3-Sapelo|cap3]] || 03/09/2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[ESMF-Sapelo2|ESMF]] || 7.0.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[cap3]] || 10/2011 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[eSpeak-Sapelo2|eSpeak]] || 1.48.04 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[casava]] || 1.8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ete-Sapelo2|Ete]] || 3.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[cblas]] || 3.0 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[EVcouplings-Sapelo2|EVcouplings]] || 0.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[cd-hit]] || 4.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[EVidenceModeler-Sapelo2|EVidenceModeler]] || 0.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[cdbfasta]] || 04282012 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Exonerate-Sapelo2 |Exonerate]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[cdbtools]] || 06172013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Exonerate-Teaching|Exonerate]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| <span id ="F"></span>[[FALCON-Sapelo2|FALCON]] || 02282018_unzip || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CEAS]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Fast-Plast-Sapelo2|Fast-Plast]] || 1.2.6, 1.2.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CEGMA]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[FASTA-Sapelo2|FASTA]] || 36.3.5e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[celera]] || 8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[fast-GeP-Sapelo2|fast-GeP]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CFOUR-Sapelo|CFOUR]] || 1.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[FastME-Sapelo2|FastME]] || 2.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CFOUR]] || beta, 1.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[FastQC-Sapelo2|FastQC]] || 0.11.5,0.11.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CGAT-Sapelo|CGAT]] || 0.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[FastQValidator-Sapelo2|FastQValidator]] || 0.1.1a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CheckM-Sapelo|CheckM]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[FastQ_Screen-Sapelo2|FastQ_Screen]] || 0.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[CheckM]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[fastSTRUCTURE-Sapelo2|FastSTRUCTURE]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ChromHMM]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[FastTree-Sapelo2 |FastTree]] || 2.1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[circoletto]] || 21.10.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[FastViromeExplorer-Sapelo2|FastViromeExplorer]] || 20180918 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[circos]] || 0.64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[FASTX-Toolkit-Sapelo2|FASTX-Toolkit]] || 0.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[cisgenome]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[FFmpeg-Sapelo2|FFmpeg]] || 3.1.3, 3.4.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CLAPACK]] || 3.2.1 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[FFTW-Sapelo2|FFTW]] || 3.3.4, 3.3.6, 3.3.7 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CLUMPP]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[FIAT-Sapelo2|FIAT]] || 1.6.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Clustal-Omega]] || 1.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[fineSTRUCTURE-Sapelo2|fineSTRUCTURE]] || 2.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ClustalW]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[FLASH-Sapelo2|FLASH]] || 1.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CLUSTER]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[FLTK-Sapelo2|FLTK]] || 1.3.4 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[cmake-Sapelo|cmake]] || 2.8.12.2, 3.0.2|| [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Flye-Sapelo2|Flye]] || 2.3.6, 2.6, 2.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CNVnator]] || 0.2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[FoX-Sapelo2|FoX]] || 4.1.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[cnv-seq]] || 0.2-7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[freebayes-Sapelo2|Freebayes]] || 1.2.0, 1.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Coding Potential Calculator]] || 0.9-r2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[freebayes-Teaching|Freebayes]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[freesasa-Sapelo2|freesasa]] || 2.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[CoMap]] || 1.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[FriBidi-Sapelo2|FriBidi]] || 1.0.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Conclustador]] || 0.4a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Funannotate-Sapelo2|Funannotate]] || 1.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Genome | Consed]] || 28.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[FuzzyWuzzy-Sapelo2|FuzzyWuzzy]] || 0.17.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CONSEL]] || v0.20 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[fxtract-Sapelo2|fxtract]] || 2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CORMA]] || 5.21 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="G"></span> [[G2gtools-Sapelo2|g2gtools]] || 0.2.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[cortex_con]] || 0.04c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GAG-Sapelo2|GAG]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[cortex_var]] || 1.0.5.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[GAG-Teaching|GAG]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[GAMESS-Sapelo2|GAMESS]] || 14Feb2018 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Count]] || 2010-04-02 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GapFiller-Sapelo2|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CRB-BLAST]] || 0.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[GapFiller-Teaching|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[GAPIT-Sapelo2|GAPIT]] || 20180524 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CREST]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GAPPadder-Sapelo2|GAPPadder]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CrossMap]] || 0.1.5 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GARLI-Sapelo2|GARLI]] || 2.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ctrax]] || 0.3.2 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GATK-Sapelo2|GATK]] || 3.4-0, 3.8-0, 3.8-1, 4.0.3.0, 4.0.11.0, 4.1.0.0, 4.1.2.0, 4.1.5.0, 4.1.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CUDA-Sapelo|CUDA]] || 5.0.35, 6.5.14 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[GATK-Teaching|GATK]] || 3.8-0, 3.4-0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[GAUSSIAN-Sapelo2|GAUSSIAN]] || 09, 16 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CUDA]] || 4.0.17, 4.2.9, 5.0.35, 6.0.37, 6.5.14 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GAUSSIAN-Teaching|GAUSSIAN]] || 16 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[cufflinks-Sapelo|cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[GaussView-Sapelo2|GaussView]] || 5, 6.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GaussView-Teaching|GaussView]] || 6.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[cutadapt-Sapelo|cutadapt]] || 1.9.dev1  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[GBlocks-Sapelo2|GBlocks]] || 0.91b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[cutadapt]] || 1.9.dev1  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GCTA-Sapelo2 |GCTA]] || 1.26.0, 1.93.0-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[CWEB]] || 3.64 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GD-Sapelo2|GD]] || 2.66 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="D"></span>[[Danpos2]] || 2.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GDAL-Sapelo2|GDAL]] || 2.1.0, 2.2.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[datamash-Sapelo|datamash]] || 1.0.7 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[gdc-client-Sapelo2 |gdc-client]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[datamash]] || 1.0.6 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Gdk-pixbuf-Sapelo2|Gdk-pixbuf]] || 2.36.0 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Davinci]] || 2.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GEAN-Sapelo2|GEAN]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[DBG2OLC]] || 04062015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GEM-Sapelo2|GEM]] || 1.0, 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ddRADseq]] || 0.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GEM-library-Sapelo2 |GEM-library]] || 20130406-045632 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[DeconSeq]] || 0.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GeneMark.hmm.eukaryotic-Sapelo2|GeneMark.hmm.eukaryotic]] || 4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[deepnet-Sapelo|deepnet]] || 20151013 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[GeneMarkES-Sapelo2|GeneMarkES]] || 4.33, 4.57 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[deeptools]] || 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!--| [[GeneMarkES-Teaching|GeneMarkES]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[GeneMarkS-T-Sapelo2|GeneMarkS-T]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[deepnet]] || 20150820 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GeneMarkS-Sapelo2|GeneMarkS]] || 4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[DELLY]] || 0.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GenericRepeatFinder-Sapelo2|GenericRepeatFinder]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[demuxipy]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GenMap-Sapelo2|GenMap]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[dendropy-Sapelo|dendropy]] || 3.12.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Genocore-Sapelo2|Genocore]] || 2020-05-13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[detect-NAHR-Sapelo|detect-NAHR]] || 2015.09.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Genome-Sapelo2|Genome]] || Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[DETONATE]] || 20140123 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GenomeTools-Sapelo2|GenomeTools]] || 1.5.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[DIAMOND-Sapelo|DIAMOND]] || 0.7.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Genrich-Sapelo2|Genrich]] || 0.5, 0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[DIAMOND]] || 0.6.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GEOS-Sapelo2|GEOS]] || 3.6.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[DISCOVAR]] || 49856 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GET_HOMOLOGUES-Sapelo2|GET_HOMOLOGUES]] || 1.7.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[diyabc]] || 2.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[GET_HOMOLOGUES-Teaching|GET_HOMOLOGUES]] || 1.7.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[GET_PHYLOMARKERS-Sapelo2|GET_PHYLOMARKERS]] || 1.2.11, 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[DLCoal]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[gfaviz-Sapelo2|gfaviz]] || 1.0.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[dnasam]] || 20100621 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Gffcompare-Sapelo2|Gffcompare]] || 0.10.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[dDocent]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[gffread-Sapelo2|gffread]] || 0.9.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[drmma]] || 0.5 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GFlow-Sapelo2|GFlow]] || 0.1.7 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="E"></span>[[ea-utils]] || 1.1.2-822  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Ghostscript-Sapelo2|Ghostscript]] || 9.20, 9.22 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[eclipse]] || 4.3.1 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GISTIC-Sapelo2|GISTIC]] || 2.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ECTools]] || 08/18/2014 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[gkin-Sapelo2|Gkin]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[edena]] || v3.130110 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GL2PS-Sapelo2|GL2PS]] || 1.4.0 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[EDGE-pro]] || 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GLib-Sapelo2|GLib]] || 2.49.5, 2.53.5, 2.54.3 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[editag]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GLIMMER-Sapelo2|GLIMMER]] || 3.02b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[EMBOSS]] || 6.5.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[GLIMMER-Teaching|GLIMMER]] || 3.02b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[GLPK-Sapelo2|GLPK]] || 4.63, 4.65 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[emirge]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GMAP-GSNAP-Sapelo2|GMAP-GSNAP]] || 2016-11-07, 2018-07-04 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[emmax]] || beta-07Mar2010 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GMP-Sapelo2|GMP]] || 4.3.2, 6.1.1, 6.1.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[emmix]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[gnuplot-Sapelo2|gnuplot]] || 5.0.5 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ensembl-tools]] || 76 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GObject-Introspection-Sapelo2|GObject-Introspection]] || 1.49.1, 1.54.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ESTscan]] || 3.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[grace-Sapelo2|grace]] || 5.1.25 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[evm (EVidenceModeler)]] || r2012-06-25 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GraftM-Sapelo2|GraftM]] || 0.11.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[exabayes-Sapelo | exabayes]] || 1.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[GraphicsMagicK-Sapelo2|GraphicsMagicK]] || 1.3.28 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[exabayes]] || 1.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Graphviz-Sapelo2|Graphviz]] || 2.40.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ExaML-Sapelo | ExaML]] || 3.0.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[GROCSVs-Sapelo2|GROCSVs]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ExaML]] || 315576 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Gromacs-Sapelo2 |Gromacs]] || 2016.4, 2018.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[exonerate]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GSL-Sapelo2|GSL]] || 1.16, 2.1, 2.3. 2.4, 2.5 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[express]] || 1.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GStreamer-Sapelo2|GStreamer]] || 1.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="F"></span>[[FALCON-Sapelo|FALCON]] || 0.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[GTDBTk-Sapelo2|GTDBTk]] || 0.2.2, 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[FALCON]] || 0.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[gtftogenepred-Sapelo2|gtftogenepred]] || 377-3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[FAR]] || 2.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GTK+-Sapelo2|GTK+]] || 2.24.31 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FASTA]] || 36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[GTS-Sapelo2|GTS]] || 0.7.6 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[fasta format cleaner]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Guile-Sapelo2|Guile]] || 1.8.8 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[fastphase-Sapelo|fastphase]] || 1.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="H"></span>[[h5py-Sapelo2|h5py]] || 2.7.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[fastphase]] || 1.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[HapCUT-Sapelo2|HapCUT]] || 0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FastQC-Sapelo|FastQC]] || 0.11.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[HapCUT2-Sapelo2|HapCUT2]] || 20190606 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FastQC]] || 0.11.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[HarfBuzz-Sapelo2|HarfBuzz]] || 1.3.1, 1.7.5 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FastTree]] || 2.1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[HARP-Sapelo2|HARP]] || 140925_103521 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FastX-Sapelo|FastX]] || 0.0.13.2, 0.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Harvest-Teaching|Harvest]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[HarvestTools-Sapelo2|HarvestTools]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FastX]] || 0.0.13.2, 0.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[HH-suite-Sapelo2|HH-suite]] || 3.0-beta.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FastUniq]] || 1.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[HiC-Pro-Sapelo2|HiC-Pro]] || 2.11.0-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FCP]] || 1.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Hinge-Sapelo2|Hinge]] || 0.5.0-4-deb_cv1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FFmpeg]] || 0.10.2 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[hindex-Sapelo2|hindex]] || 1.42 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FFTbor]] || 11.21.2014 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[HISAT2-Sapelo2|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FFTW-Sapelo|FFTW]] || 2.1.5, 3.3.4 || [[:Category:Math_Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[HISAT2-Teaching|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HMMER-Sapelo2|HMMER]] || 2.3, 3.1b2, 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FFTW]] || 2.1.5, 3.3.0, 3.3.3 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Homer-Sapelo2|Homer]] || 4.9.1, 4.10, 4.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ Fiji]] || 2015/12/09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Homer-Teaching|Homer]] || 4.9.1, 4.10, 4.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[HPCGridRunner-Sapelo2|HPCGridRunner]] || 1.0.2 || [[:Category:Tools|Tools]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FIRE]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[htop-Sapelo2|htop]] || 2.0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FitModel]] ||20140407 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[HTSeq-Sapelo2|HTSeq]] || 0.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FLASH]] || 1.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[HTSeq-Teaching|HTSeq]] || 0.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[HTSlib-Sapelo2|HTSlib]] || 1.3.2, 1.6, 1.8 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Flexbar]] || 2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[HTStream-Sapelo2|HTStream]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[FragStats]] || 2.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[HUMAnN2-Sapelo2|HUMAnN2]] || 0.11.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Freebayes-Sapelo|Freebayes]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[HybPiper-Sapelo2|HybPiper]] || 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Freebayes]] || 1.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[HyPhy-Sapelo2|HyPhy]] || 2.5.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[F-Seq]] || 1.84 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Hypre-Sapelo2|Hypre]] || 2.11.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Fsl]] || 5.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="I"></span>[[ICORN2-Sapelo2|ICORN2]] || 0.95 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="G"></span>[[gam-ngs]] || 10/8/2013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[IDBA-UD-Sapelo2|IDBA-UD]] || 1.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GAMESS-Sapelo|GAMESS]] || 5Dec2014 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[IDR-Sapelo2|IDR]] || 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GAMESS]] || May2012R1 with XMVB 2.0, May2013R1, 5Dec2014 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[IgBlast-Sapelo2 | IgBlast]] || 1.16.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GapFiller]] || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[IGV-Sapelo2 |IGV]] || 2.4.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[garli]] || 2.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[IGV-Teaching |IGV]] || 2.4.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[IGVTools-Sapelo2 |IGVTools]] || 2.3.98 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[gatk-Sapelo|gatk]] || 3.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[illumiprocessor-Sapelo2 |illumiprocessor]] || 2.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[gatk]] || 3.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ImageMagick-Sapelo2|ImageMagick]] || 7.0.5, 7.0.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GAUSSIAN09]] || 09 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Infernal-Sapelo2|Infernal]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GaussView]] || 5 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[IonCom-Sapelo2|IonCom]] || 20190521  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Gblocks]] || 0.91b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[iprscan-Sapelo2|iprscan (InterProScan)]] || 5.29-68.0, 5.31-70.0, 5.32-71.0, 5.41-78.0, 5.44-90.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GBSX]] || 1.1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ipyrad-Sapelo2|ipyrad]] || 0.7.24, 0.7.28, 0.7.30, 0.9.19 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GDB]] || 7.0.1 || [[:Category:Debugger|Debugger]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[ipyrad-Teaching|Ipyrad]] || 0.7.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[IPython-Sapelo2|IPython]] || 5.3.0, 6.2.1, 7.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GEM]] || 3rd pre-release || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[IQ-Tree-Sapelo2|IQ-Tree]] || 1.5.5, 1.6.5, 1.6.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GEMMA]] || 0.95alpha || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[IQ-Tree-Teaching|IQ-Tree]] || 1.6.12|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[GeneMark]] || 4.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[IRMA-Sapelo2|IRMA]] || 0.6.7, 0.9.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Genome]] || Phred version: 0.071220.c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ISGPipeline-Sapelo2|ISGPipeline]] || 0.16.10-3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GenomeMapper]] || 0.4.4 (Version for SHORE/WMD3) || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[IsONclust-Sapelo2 |IsONclust]] || 0.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GenomeTools]] || 1.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[IsoSeq3-Sapelo2|IsoSeq3]] || 3.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SMRT-Analysis|GenomicConsensus]] || 0.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ITSTool-Sapelo2|ITSTool]] || 2.0.4 || [[:Category:Utility|Utility]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Gingr]] || 1.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="J"></span>[[JAGS-Sapelo2|JAGS]] || 4.3.0 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[git-Sapelo|git]] || 1.7.1, 2.7.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[JasPer-Sapelo2|JasPer]] || 1.900.1, 2.0.12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[git]] || 1.7.6, 1.7.11.3, 2.0.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Java-Sapelo2|Java]] || 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144, 1.8.0_202 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GKIN]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Java-Teaching|Java]] || 1.8.0_144, 1.8.0_241, 11.0.2 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Glimmer]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[jcvi-Sapelo2|jcvi]] || 0.8.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GlimmerHMM]] || 3.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Jellyfish-Sapelo2|Jellyfish]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[gmap-gsnap]] || 2013-09-11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[JModelTest-Sapelo2|JModelTest]] || 2.1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GMP-Sapelo|GMP]] || 4.3.1, 6.0.0 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Juicer-Sapelo2|Juicer]] || 1.5.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GMPFRXX-Sapelo|GMPFRXX]] || 20081116 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Julia-Sapelo2|Julia]] || 1.3.1|| [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GNU Compilers-Sapelo|GNU Compilers]] || 4.4.7, 4.7.4, 5.3.0 || [[:Category:Compiler|Compiler]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[JUnit-Sapelo2|JUnit]] || 4.12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GNU Compilers]] || 4.1.2, 4.4.7, 4.5.3, 4.7.1, 5.3.0 || [[:Category:Compiler|Compiler]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Jupyter-Sapelo2|Jupyter]] || 4.3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GNUMAP]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="K"></span>[[Kaiju-Sapelo2|Kaiju]] || 1.6.2, 1.7.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[gnuplot]] || 4.0, 4.6.0 || [[:Category:Graphics|Graphics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[kallisto-Sapelo2|kallisto]] || 0.43.1, 0.46.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[gprof]] || 2.17 || [[:Category:Profiler|Profiler]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[kallisto-Teaching|kallisto]] || 0.43.1, 0.46.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[KAT-Sapelo2|KAT]] || 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[gpu-blast]] || 1.1 with ncbi-blast-2.2.25+ || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Kent_tools-Sapelo2|Kent_tools]] || 20190208, 20200512 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[grace-Sapelo| grace]] || 5.1.25 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[keras-Sapelo2|keras]] || 2.0.6, 2.2.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[grace]] || 5.1.22 || [[:Category:Graphics|Graphics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[KinFin-Sapelo2|KinFin]] || 1.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GrADS-Sapelo|GrADS]] || 2.1a3 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[KmerGenie-Sapelo2|KmerGenie]] || 1.7044 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GraPhlAn]] || 0.9.7 || [[:Category:Graphics|Graphics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[KmerGenie-Teaching|KmerGenie]] || 1.7044 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Kraken2-Sapelo2|Kraken2]] || 2.0.7-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Gromacs-Sapelo | Gromacs]] || 5.0.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[KronaTools-Sapelo2|KronaTools]] || 2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Gromacs]] || 4.5.5, 4.6.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="L"></span><!-- [[LADR-Teaching|LADR]] || 2009-11A || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GSL-Sapelo|GSL]] || 1.16 || [[:Category:Math_Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| --> [[LAME-Sapelo2|LAME]] || 3.100 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GSL]] || 1.9, 1.15 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LAMMPS-Sapelo2|LAMMPS]] || 30Jul16, 11Aug17 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[gss]] || || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LAPACK-Sapelo2|LAPACK]] || 3.6.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="H"></span> [[Haplomerger2]] || 20151124 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LAST-Sapelo2|LAST]] || 956, 959, 1047 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Hapmix]] || 2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LASTZ-Sapelo2|LASTZ]] || 1.04.00 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[HARP]] || 130306_105556 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LDhat-Sapelo2|LDhat]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[HDF5-Sapelo | HDF5]] || 1.8.6, 1.8.14 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[LDhelmet-Sapelo2|LDhelmet]] || 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[HDF5]] || 1.6.4, 1.8.9 || [[:Category:Library|Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Leafcutter-Sapelo2|Leafcutter]] || 0.2.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[HH-Suite]] || 2.0.16 || [[:Category:Library|Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Lep-MAP3-Sapelo2|Lep-MAP3]] || 0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Hmmer-Sapelo|Hmmer]] || 3.1b2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[libssh2-Sapelo2|libssh2]] || 1.9.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Hmmer]] || 3.1b1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LibStatGen-Sapelo2|LibStatGen]] || 1.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Homer]] || 4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LibTIFF-Sapelo2|LibTIFF]] || 4.0.6, 4.0.8, 4.0.9 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[htseq]] || 0.5.3p3, 0.6.1p1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LINKS-Sapelo2|LINKS]] || 1.8.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[HyPhy]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LittleCMS-Sapelo2|LittleCMS]] || 2.8 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="I"></span> [[IDBA-UD|IDBA-MT]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LLVM-Sapelo2|LLVM]] || 3.8.1, 4.0.0, 5.0.1, 6.0.0 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[IDBA-Sapelo | IDBA]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[LMDB-Sapelo2|LMDB]] || 0.9.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[IDBA-UD]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LoFreq-Sapelo2|LoFreq]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[igb]] || 6.7.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Log-Log4perl-Sapelo2|Log-Log4perl]] || 1.49 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[IGV]] || 2.1.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LongRanger-Sapelo2|LongRanger]] || 2.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[IGVTools]] || 2.3.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LoRDEC-Sapelo2|LoRDEC]] || 0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[IMa2]] || 8.27.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LoRMA-Sapelo2|LoRMA]] || 0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[indel-Seq-Gen]] || 2.02 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LRCstats-Sapelo2|LRCstats]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Infernal]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[lrslib-Sapelo2|lrslib]] || 6.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[InStruct]] || 3.2.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LS-DYNA-Sapelo2|LS-DYNA]] || 10.123355 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Intel Compilers-Sapelo|Intel Compilers]] || 14.0.0, 15.0.2 || [[:Category:Compiler|Compiler]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[LS-PrePost-Sapelo2|LS-PrePost]] || 4.5 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Intel Compilers]] || 2013 SP1 || [[:Category:Compiler|Compiler]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LtrDetector-Sapelo2|LtrDetector]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[iprscan-Sapelo|iprscan (InterProScan)]] || 5.16-55.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[LTR_Finder-Sapelo2|LTR_Finder]] || 1.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[iprscan (InterProScan)]] || 5.9-50.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LTR_retriever-Sapelo2|LTR_retriever]] || 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[iscan]] || 1.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LUMPY-Sapelo2|LUMPY]] || 0.2.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ITK]] || 3.20.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[LZO-Sapelo2|LZO]] || 2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="J"></span>[[JAGS-Sapelo|JAGS]] || 3.4.0, 4.1.0 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="M"></span>[[M4-Sapelo2|M4]] || 1.4.16, 1.4.17, 1.4.17 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[JAGS]] || 3.3.0, 4.1.0 || [[:Category:Statistics|Statistics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MacSyFinder-Sapelo2|MacSyFinder]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[JasPer-Sapelo|JasPer]] || 1.900.1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Macs2-Sapelo2|MACS2]] || 2.1.1, 2.1.2, 2.2.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[JasPer]] || 1.900.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MAFFT-Sapelo2|MAFFT]] || 7.273, 7.313, 7.397, 7.407, 7.453, 7.470 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Jellyfish-Sapelo|Jellyfish]] || 2.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MAFFT-Teaching|MAFFT]] || 7.130, 7.273, 7.313 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Magic-BLAST-Sapelo2|Magic-BLAST]] || 1.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Jellyfish]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Magma-GPU-Sapelo2|Magma-GPU]] || 2.3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[JModelTest]] || 2.1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Magma-Sapelo2|Magma]] || 2.22-9, 2.24-4, 2.25 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Julia]] || 0.3.0-beta, 0.3.3 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[mahotas-Sapelo2|mahotas]] || 1.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="K"></span>[[k-link]] || 03 27,  2009 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MAJIQ-Sapelo2|MAJIQ]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Kat]] || 1.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Maker-Sapelo2|Maker]] || 3.01.02-beta,2.31.9, 2.31.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[KisSplice]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Maker-Sap2test|Maker]] || 3.01.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sap2test|Sap2test]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Kraken]] || 0.10.5-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Maker-Teaching|Maker]] || 2.31.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Mako-Sapelo2|Mako]] || 1.0.4, 1.0.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[KmerGenie]] || 1.5393 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MAnorm-Sapelo2|MAnorm]] || 1.1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="L"></span>[[LAMMPS-Sapelo | LAMMPS]] || 16Aug13, 5Sep14, 10Aug15, 7Dec15 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[MARVEL-Sapelo2|MARVEL]] || 20180918 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[LAMMPS]] || 23Sep13, 5Sep14, 10Aug15 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Mash-Sapelo2|Mash]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[LAPACK]] || 3.0, 3.4.2 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MashMap-Sapelo2|MashMap]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[LASTZ]] || 1.03.02 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MaSIF-Sapelo2|MaSIF]] || 20200722 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[LCS]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MaSuRCA-Sapelo2|MaSuRCA]] || 3.2.2, 3.2.9, 3.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[LDDist]] || 1.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Mathematica-Sapelo2|Mathematica]] || 12.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[libsequence]] || 1.7.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MatLab-Sapelo2|Matlab]] || R2017b, R2018b, R2019b || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[LIBSVM-Sapelo|LIBSVM]] || 3.21 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MatLab-Teaching|Matlab]] || R2018b || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-  
|- -->
| [[LIBSVM]] || 3.17 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| [[Matplotlib-Sapelo2|Matplotlib]] || 1.5.3, 2.0.2, 2.1.0, 2.1.2, 2.2.3, 3.0.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
| [[Lighter]] || 06192015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LLVM-Clang]] || 3.1 || [[:Category:Compiler|Compiler]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[lmod]] || 5.8 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Mauve-Sapelo2|Mauve]] || 2015-02-13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[LoFreq]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Maven-Sapelo2|Maven]] || 3.5.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[lsa]] || 11182011 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Mawk-Sapelo2|Mawk]] || 1.3.4|| [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="M"></span>[[macs]] || 1.4.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MaxBin-Sapelo2|MaxBin]] || 2.2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[macs2]] || 2.1.0.20140616  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MCL-Sapelo2|MCL]] || 14.137 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Mafft]] || 7.029-e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MCScanX-Sapelo2 |MCScanX]] || 0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Magma]] || 2.21-3 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Medaka-Sapelo2 |Medaka]] || 0.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[maker]] || 2.31.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Medusa-Sapelo2 |Medusa]] || 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Maple]] || 16 || [[:Category:Other|Other]], [[:Category:Programming|Programming]], [[:Category:Graphics|Graphics]]|| [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MEGA-Sapelo2 |MEGA]] || 7.0.26-1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MapSplice2]] || 2.1.7 || [[:Category:Bioinformatics|Bioinformatics]]|| [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MEGAHIT-Sapelo2 |MEGAHIT]] || 1.1.1, 1.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MAQ]] || 0.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Megalodon-Sapelo2|Megalodon]] || 0.1.0, 1.0.0, 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MARDIGRAS]] || 3.21 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Megam-Teaching|Megam]] || 0.92 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[MeGAMerge-Sapelo2|MeGAMerge]] || 3.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MaSuRCA]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MEME-Sapelo2|MEME]] || 4.11.0, 5.0.0_1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MATS]] || 3.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Meraculous-Sapelo2|Meraculous]] || 2.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Mathematica]] || 9.0 (currently not available) || [[:Category:Other|Other]], [[:Category:Programming|Programming]] , [[:Category:Graphics|Graphics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Mercurial-Sapelo2 |Mercurial]] || 4.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MatLab-Sapelo|Matlab]] || R2015b (8.6) || [[:Category:Other|Other]], [[:Category:Programming|Programming]], [[:Category:Graphics|Graphics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Mesa-Sapelo2 |Mesa]] || 12.0.2, 17.3.6 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MatLab]] || R2012a (7.14), R2013a (8.1) || [[:Category:Other|Other]], [[:Category:Programming|Programming]], [[:Category:Graphics|Graphics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MET-Sapelo2 |MET]] || 7.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Mauve]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MetaBAT-Sapelo2|MetaBAT]] || 2.12.1, 2.15-4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MAVEN-genome]] || 682, 769, 774 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[METABOLIC-Sapelo2|METABOLIC]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MCScanX]] || 10/18/2013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MetaCLADE-Sapelo2|MetaCLADE]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MCL]] || 12-135 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MetaPhlAn-Sapelo2|MetaPhlAn]] || 1.7.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MEAD]] || 2.2.9 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MetaPhlAn2-Sapelo2|MetaPhlAn2]] || 2.7.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Megahit-Sapelo | Megahit]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[methylpy-Sapelo2|methylpy]] || 1.2.9, 1.3.2, 1.4.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Megahit]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[METIS-Sapelo2|METIS]] || 5.1.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MeGAMerge]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MG-RAST-Tools-Sapelo2 |MG-RAST-Tools]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[megan]] || 5.5.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[minced-Sapelo2|minced]] || 0.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MEME-Sapelo|MEME]] || 4.10.2, 4.11.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Minia-Sapelo2|Minia]] || 3.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MEME]] || 4.10.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[miniasm-Sapelo2|miniasm]] || 0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MEMo]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[miniasm-Teaching|miniasm]] || 0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Miniconda3-Sapelo2|Miniconda3]] || 4.4.10 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MetaMOS]] || v1.5rc1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[minimap2-Sapelo2|minimap2]] || 2.10, 2.13, 2.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MetaBAT-Sapelo|MetaBAT]] || 20151110 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[minimap2-Teaching|minimap2]] || 2.10, 2.13, 2.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[MinPath-Sapelo2|MinPath]] || 1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Metavelvet-Sapelo|Metavelvet]] || 1.2.02 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[MIonSite-Sapelo2|MIonSite]] || 20190528 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Metavelvet]] || 1.2.02 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Mip-Sapelo2|mip]] || 1.7.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MetavelvetSL-Sapelo|MetavelvetSL]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Mirdeep-p-Sapelo2|mirdeep-p]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MethPipeline-Sapelo|MethPipeline]] || 0.1_120115 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[MiRDeep2-Sapelo2|miRDeep2]] || 0.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[METIS]] || 4.0.3, 5.1.0 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[miRDP2-Sapelo2|MiRDP2]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MGA]] || 1.5.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MISO-Sapelo2|MISO]] || 0.5.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Migrate]] || 3.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MITE-Hunter-Sapelo2|MITE-Hunter]] || 11-2011 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Minia]] || 1.4683 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MITE-Tracker-Sapelo2|MITE-Tracker]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MIRA]] || 3.9.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MITObim-Sapelo2|MITObim]] || 1.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MITE-Hunter]] || 11-2011 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MitoZ-Sapelo2|MitoZ]] || 2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MixMapper-Sapelo|MixMapper]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[mmquant-Sapelo2|mmquant]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MKL-Sapelo|MKL]] || 11.1, 11.2 || [[:Category:Math_Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Montreal Forced Aligner-Sapelo2|Montreal Forced Aligner]] || 1.0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MKL]] || 11.0 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MOTECC_qmdcp-Teaching|MOTECC_qmdcp]] || 90 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Mothur-Sapelo2|Mothur]] || 1.39.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MOABS-Sapelo|MOABS]] || 1.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[motif-Sapelo2|motif]] || 2.3.5, 2.3.8 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MOABS]] || 1.2.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MPJ-Express-Sapelo2|MPJ-Express]] || 0.44 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MOCAT-Sapelo|MOCAT]] || 1.3r2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[MrBayes-Sapelo2|MrBayes]] || 3.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MONO]] || 3.0.3 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MREPS-Sapelo2|MREPS]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MOSAIK]] || 2.2.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[ms-Teaching|ms]] || 20140304 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[MSG-Sapelo2|MSG]] || 0.4.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MOTECC qmdcp]] || 90 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MSG-Teaching|MSG]] || 0.4.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[MSTmap-Sapelo2|MSTmap]] || 20181130 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MOTHUR]] || 1.35.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MultiQC-Sapelo2|MultiQC]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MP-EST]] || 1.2 || [[:Category:Programming|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MUMmer-Sapelo2|MUMmer]] || 3.23, 4.0.0beta2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[mpeg2vidcodec]] || 12 || [[:Category:Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MUMmer-Teaching|MUMmer]] || 3.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[MUSCLE-Sapelo2|MUSCLE]] || 3.8.1551, 3.8.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[mpi4py]] || 1.3 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[MuTect-Sapelo2|MuTect]] || 1.1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[mpiblast]] || 1.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MuTect-Teaching|MuTect]] || 1.1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[muver-Sapelo2|muver]] || 0.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MPFR-Sapelo|MPFR]] || 3.1.2 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[mvqtlcim-Sapelo2|mvqtlcim]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MPFRC++-Sapelo|MPFRC++]] || 3.6.2 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[MZmine2-Sapelo2|MZmine2]] || 2.40.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MrBayes]] || 3.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="N"></span> [[NAL_RNA_seq_annotation-Sapelo2|NAL_RNA_seq_annotation]] ||20200728 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[mrfast]] || 2.5.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NAMD-Sapelo2|NAMD]] || 2.13 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MSA]] || 3.8.1b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Nanocorr-Sapelo2|Nanocorr]] || 5.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MSG]] || 0.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NanoFilt-Sapelo2|NanoFilt]] || 2.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MultiLoc2-Sapelo|MultiLoc2]] || 26-10-2009 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[NanoPlot-Sapelo2|NanoPlot]] || 1.26.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MultiSplice]] || 0.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Nanopolish-Sapelo2|Nanopolish]] || 0.10.2, 0.11.1, 0.12.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MUMmer]] || 3.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NASM-Sapelo2|NASM]] || 2.11, 2.12, 2.13 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MUMPS]] || 4.10.0 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NBO-Sapelo2|NBO]] || 7.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MUSCLE]] || 3.8.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NCCL-Sapelo2|NCCL]] || 2.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MyScanACE]] || 04232012 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NCL-Sapelo2|NCL]] || 6.4.0, 6.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MuTect]] || 1.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[NCL-Teaching|NCL]] || 6.4.0, 6.5.0  || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[ncview-Sapelo2|ncview]] || 2.1.7 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="N"></span>[[NAMD]] || 2.9 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NCO-Sapelo2|NCO]] || 4.7.4 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[NCBI Blast-Sapelo|NCBI Blast]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[NCO-Teaching|NCO]] || 4.7.4 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Necklace-Sapelo2|Necklace]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[NCBI Blast]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NeEstimator-Sapelo2|NeEstimator]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[NCBI Blast +-Sapelo|NCBI Blast +]] || 2.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Neptune-Sapelo2|Neptune]] || 1.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[NCBI Blast +]] || 2.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NetSurfP-Sapelo2|NetSurfP]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[ncbi blast parsers]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Newbler-Sapelo2|Newbler]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ncbi_toolkit]] || 12.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Nextflow-Sapelo2|Nextflow]] || 18.10.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[NETCDF-Sapelo|NETCDF]] || 3.6.3, 4.1.3, 4.3.2 ||[[:Category:Library|Library]]|| [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[NextGenMap-Sapelo2|NextGenMap]] || 0.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[NETCDF]] || 3.6.3, 4.1.3 ||[[:Category:Library|Library]]|| [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ngmlr-Sapelo2|ngmlr]] || 0.2.6-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[netCDF4-python]] || 1.0.5 ||[[:Category:Library|Library]]|| [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NGmerge-Sapelo2|NGmerge]] || 0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[netlogo]] || 5.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NGS-Sapelo2|NGS]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Newbler-Sapelo|Newbler]] || 2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[NGSEPcore-Sapelo2|NGSEPcore]] || 3.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Newbler]] || 2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ngsplot-Sapelo2|ngsplot]] || 2.6.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Newick-utils]] || 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NGSQCToolkit-Sapelo2|NGSQCToolkit]] || 2.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[a5-miseq | ngopt]] || 20140604 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[nhPhyML-Sapelo2|nhPhyML]] || 20180515 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[NGS QC Toolkit]] || 2.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NiBabel-Sapelo2|NiBabel]] || 2.2.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Ngsutils]] || 0.5.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[nistats-Sapelo2|nistats]] || 0.0.1a0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[NH PhyloBayes]] || 0.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NLopt-Sapelo2|NLopt]] || 2.4.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[nhPhyML]] || 01/2012 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Nseg-Sapelo2|Nseg]] || 20180530 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[NovelSeq]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NucleoATAC-Sapelo2|NucleoATAC]] || 0.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[NovoAlign]] || 2.07.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NWChem-Sapelo2|NWChem]] || 6.8 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[NPUTE]] || v1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="O"></span>[[Oases-Sapelo2|Oases]] || 0.2.08, 0.2.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[nseg]] || 04182013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[OCaml-Sapelo2|OCaml]] || 4.01.0, 4.02.3 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[numexp]] || 1.4.2 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Ont-Guppy-Sapelo2|Ont-Guppy]] || 3.2.4, 4.0.11, 4.0.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[NWCHEM-Sapelo|NWCHEM]] || 6.5 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[OpenBUGS-Sapelo2|OpenBUGS]] || 3.2.3 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[NWCHEM]] || 6.3.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[OpenCV-Sapelo2|OpenCV]] || 3.4.1, 3.4.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[NxTrim-Sapelo|NxTrim]] || v0.3.2-alpha || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[OpenJPEG-Sapelo2|OpenJPEG]] || 2.3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[NxTrim]] || 0.3.1-alpha || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[OpenSlide-Sapelo2|OpenSlide]] || 3.4.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="O"></span>[[Oases]] || 0.2.02, 0.2.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[OpenSlide-Python-Sapelo2|OpenSlide-Python]] || 1.1.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[opal]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ORCA-Sapelo2 |ORCA]] || 3.0.3, 4.0.0.2, 4.0.1.2, 4.1.0, 4.1.1, 4.2.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Open Babel]] || 2.3.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[OrfM-Sapelo2|OrfM]] || 0.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[OpenBUGS]] || 3.2.2 || [[:Category:Statistics|Statistics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[OrganelleRef_PBA-Sapelo2|OrganelleRef_PBA]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[OpenCL]] || 1.0, 1.1 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ORGanelle_ASeMbler-Sapelo2|ORGanelle_ASeMbler]] || 0.2.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[OpenCV-Sapelo|OpenCV]] || 3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[ORGanelle_ASeMbler-Sapelo2|ORGASM]] || 0.2.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[OpenCV]] || 2.3.1, 2.4.4 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ORP-Sapelo2|ORP]] || 2.0.0, 2.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[OpenSees]] || 2015.02.26 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[OrthoFinder-Sapelo2|OrthoFinder]] || 2.1.2, 2.2.7, 2.3.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[opera]] || 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[OrthoFinder-Teaching|OrthoFinder]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[OrthoMCL-Sapelo2|OrthoMCL]] || 2.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Oqtans]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="P"></span>[[p7zip-Sapelo2|p7zip]] || 16.02 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ORCA-Sapelo | ORCA]] || 3.0.3 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[PAGIT-Sapelo2|PAGIT]] || 1.64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ORCA]] || 3.0.3 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Pairix-Sapelo2|Pairix]] || 0.3.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Orthagogue]] || 1.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[pairtools-Sapelo2|pairtools]] || 0.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[OrthoFinder]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Pal_finder-Sapelo2|Pal_finder]] || 0.02.04 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[OrthoMCL]] || 2.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PAML-Sapelo2|PAML]] || 4.9h || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[OSPREY]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PAML-Teaching|PAML]] || 4.9i || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PANDAseq-Sapelo2 |PANDAseq]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="P"></span>[[p4]] || r231 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Pangloss-Sapelo2 |Pangloss]] || 0.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[p7zip]] || 9.20.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Pango-Sapelo2 |Pango]] || 1.40.3, 1.41.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[wgs | PacBioToCA]] || 8.2beta-binary || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Panoply-Sapelo2|Panoply]] || 4.11.6 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[pagan]] || 0.39 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Parliament2-Sapelo2|Parliament2]] || 0.1.8, 0.1.11, hgsc || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[pagit]] || v1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Parsnp-Sapelo2|Parsnp]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Pairfq]] || 0.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PartitionFinder-Sapelo2|PartitionFinder]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PAML]] || 4.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[PartitionFinder-Teaching|PartitionFinder]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[PanOCT-Sapelo2|PanOCT]] || 3.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[pandas-Sapelo | pandas]] || 0.16.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[PASA-Sapelo2|PASA]] || 2.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[pandaseq]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PASTA-Sapelo2|PASTA]] || 1.8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Papara_nt]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[PASTA-Teaching|PASTA]] || 1.8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[PAUP-Sapelo2|PAUP]] || 4a165_centos64, 4a166_centos64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ParMETIS]] || 3.2.0, 4.0.3 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[pb-assembly-Sapelo2|Pb-assembly]] || 0.0.2, 0.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Paradigm]] || 0.1-9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[pbh5tools-Sapelo2 |pbh5tools]] || 0.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Paradigmshift]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PBLAT-Sapelo2|PBLAT]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ParseRNAseq]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[pbmm2-Sapelo2|pbmm2]] || 1.0.0, 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[PartitionFinder]] || 2.0.0-pre11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[pcawg-dkfz-workflow-Sapelo2|pcawg-dkfz-workflow]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[PASA]] || 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PBSuite-Sapelo2 |PBSuite]] || 15.8.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PASHA]] || 1.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PCRE-Sapelo2 |PCRE]] || 8.38, 8.39, 8.41 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PASTA]] || 1.6.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PeakRanger-Sapelo2|PeakRanger]] || 1.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PatMaN]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PEAR-Sapelo2|PEAR]] || 0.9.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Paup-Sapelo|Paup]] || 4a146 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Perl-Sapelo2|Perl]] || 5.20.3, 5.24.0, 5.24.1, 5.26.0, 5.26.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[pbh5tools]] || 0.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Perl-Teaching|Perl]] || 5.30.0 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PBSuite]] || 15.2.20 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PETSc-Sapelo2|PETSc]] || 3.8.4 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Peakranger-Sapelo|Peakranger]] || 1.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[PGDBG-Sapelo2|PGDBG]] || 18.10 || [[:Category:Debugger|Debugger]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PEAR]] || 0.9.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PGDSpider-Sapelo2|PGDSpider]] || 2.1.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Perl]] || 5.14.1 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PhaseGenomics-Sapelo2|PhaseGenomics]] || 20181220 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[perM]] || 0.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[phaser-Sapelo2 |phaser]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PETSc]] || 3.1-p8, 3.4.2 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PhaseTank-Sapelo2|PhaseTank]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Pfam_scan]] || 04282012 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PHASIS-Sapelo2 |PHASIS]] || 3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[pftools]] || 2.3.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PHENIX-Sapelo2|PHENIX]] || 1.18.2-3874 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PGDBG]] || 12.10 || [[:Category:Debugger|Debugger]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Phobius-Sapelo2|Phobius]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PGI Compilers-Sapelo|PGI Compilers]] || 2014 || [[:Category:Compiler|Compiler]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Phred/Phrap/Conced-Sapelo2|Phred/Phrap/Conced]] || Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PGI Compilers]] || 2010, 2011, 2012, 2013, 2014 || [[:Category:Compiler|Compiler]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Phycas-Sapelo2|Phycas]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PGPROF]] || 12.10 || [[:Category:Profiler|Profiler]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PHYLIP-Sapelo2|PHYLIP]] || 3.697 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PHASE]] || 2.1.1.linux || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PhyloBayes-MPI-Sapelo2 |PhyloBayes-MPI]] || 20161021 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[phobius]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PhyloCSF-Sapelo2 |PhyloCSF]] || 20180919 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[phred/phrap/conced]] || || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PhyloSift-Sapelo2 |PhyloSift]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Phyldog]] || || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PhyloSkeleton-Sapelo2 |PhyloSkeleton]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PhyloBayes]] || 3.3b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[phyluce-Sapelo2|Phyluce]] || 1.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PhyloBayes-MPI]] || 1.3b, 1.4e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PhyML-Sapelo2|PhyML]] || 3.3.20170530 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Phylip]] || 3.69 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PhyParts-Sapelo2|PhyParts]] || 0.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PHYML]] || 20110919 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[picard-Sapelo2 |picard]] || 2.16.0, 2.21.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[picard-Sapelo |picard]] || 1.135 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[picard-Teaching|Picard]] || 2.16.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[PICRUSt-Sapelo2 |PICRUSt]] || 1.1.3, 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[picard]] || 1.137 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[pigz-Sapelo2|pigz]] || 2.3.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[picrust]] || 1.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PIL-Sapelo2|PIL]] || 1.1.7 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[pileup]] || 0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PILER-Sapelo2|PILER]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[pindel]] || 0.2.4t || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Pilon-Sapelo2|Pilon]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[pknotsRG]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[pilon-Teaching|Pilon]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[PlantCV-Sapelo2|PlantCV]] || 3.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[platanus]] || 1.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Platypus-Sapelo2|Platypus]] || 0.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[platypus-Sapelo|platypus]] || 0.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[PLEK-Sapelo2|PLEK]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[plink]] || 1.07, 1.9-beta3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PLINK-Sapelo2|PLINK]] || 1.07, 1.9b, 2.0-alpha1, 2.0-alpha2, 2.0-alpha2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[popbam]] || 0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[plmc-Sapelo2|Plmc]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[prank]] || 100802 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Porechop-Sapelo2|Porechop]] || 0.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Primer3]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PoSSuMsearch-Sapelo2|PoSSuMsearch]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PRINSEQ]] || 0.20.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[pplacer-Sapelo2|Pplacer]] || 1.1.alpha19 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[proovread]] || 2.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Praat-Sapelo2|Praat]] || 6048-Linux64-nogui || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Prokka]] || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PRANK-Sapelo2|PRANK]] || 170427 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[protobuf-Sapelo|protobuf]] || 2.4.1, 2.6.1, 3.0.0-beta1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[PRAPI-Sapelo2|PRAPI]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[protobuf]] || 2.6.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| [[Primer3-Sapelo2|Primer3]] || 2.3.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
| [[Prottest3]] || 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[psmc]] || 0.6.4-r33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PRINSEQ-Sapelo2|PRINSEQ]] || 0.20.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ptRNApred]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ProbABEL-Sapelo2|ProbABEL]] || 0.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PuMA]] || 0.904 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[prodigal-Sapelo2|Prodigal]] || 2.6.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[pyfasta]] || 0.5.2 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[progressiveCactus-Sapelo2|progressiveCactus]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[pydev]] || 3.3.3 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ProphET-Sapelo2 |ProphET]] || 20200323 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[pynast]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PROJ-Sapelo2|PROJ]] || 4.9.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PyNIO]] || 1.4.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Prokka-Sapelo2|Prokka]] || 1.13, 1.14.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[pyRAD]] || 3.0.61 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Prokka-Teaching|Prokka]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[proovread-Sapelo2|proovread]] || 2.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[pysam]] || 0.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[proovread-Teaching|Proovread]] || 2.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[protobuf-Sapelo2|protobuf]] || 3.3.0, 3.4.0, 3.6.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[PyTables]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[LADR-Teaching|prover9]] || 2009-11A || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|- -->
| [[PSI4-Sapelo2|PSI4]] || 1.3.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Python-Sapelo | Python]] || 2.6.6, 2.7.8, 3.4.3 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[psmc-Sapelo2|psmc]] || 0.6.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Python]] || 2.4.3, 2.7.2, 2.7.8, 3.3.0. 3.4.0 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[pVACtools-Sapelo2|pVACtools]] || 1.5.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="Q"></span>[[Qiime]] || 1.7.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[pyani-Sapelo2|pyani]] || 0.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[qeseq]] || 0.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[pybedtools-Sapelo2|pybedtools]] || 0.7.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[QT]] || 4.8.5 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PyCUDA-Sapelo2|PyCUDA]] || 2019.1.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[QTL Cartographer]] || 1.17j || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[pyDNA-Sapelo2|pyDNA]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[quake]] || 0.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[pydub-Sapelo2|pydub]] || 0.22.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[quast]] || 3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[pyfasta-Sapelo2|pyfasta]] || 0.5.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Quantum Espresso]] || 4.3.2, 5.0.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[PyMOL-Sapelo2|PyMOL]] || 2.3.0a0 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="R"></span>[[R-Sapelo | R]] || 3.1.2, 3.2.1, 3.2.3|| [[:Category:Statistics|Statistics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[PyNBS-Sapelo2 |pyNBS]] || 0.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[R]] || 2.14.0, 2.15.0, 2.15.2, 3.0.0, 3.0.2, 3.0.3, 3.1.0, 3.1.1, 3.2.0, 3.2.3 || [[:Category:Statistics|Statistics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Pynini-Teaching|Pynini]] || 2.0.8 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[PyPy-Sapelo2 |PyPy]] || 6.0.0 (2.7.14) || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RACA]] || 0.9.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Pysam-Sapelo2 |Pysam]] || 0.10.0, 0.13.0, 0.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RADnome]] || 0.0.1-7-25 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Python-Sapelo2 |Python]] || 2.7.12, 2.7.14, 3.5.2, 3.6.4, 3.7.0, 3.7.2, 3.7.4, 3.8.2 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RANDFOLD]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Python-Teaching|Python]] || 3.7.4, 2.7.16 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RAPSearch2-Sapelo |RAPSearch2]] || 2.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[PyTorch-Sapelo2|PyTorch]] || 0.3.1, 1.0.0, 1.2.0, 1.3.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RAPSearch2]] || 2.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[pyvcf-Sapelo2 |pyvcf]] || 0.6.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RATT]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Pweave-Teaching|Pweave]] || 0.30.3 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| <span id ="Q"></span>[[q2-brocc-Sapelo2|q2-brocc]] || 2018.6.0.dev0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RAxML-Sapelo | RAxML]] || 8.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[QCTOOL-Sapelo2|QCTOOL]] || 2.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RAxML]] || 8.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[qiaseq-16S-Sapelo2|qiaseq-16S]] || 20190306 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RAxML-Light]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[QIIME2-Sapelo2|QIIME2]] || 2018.2, 2018.4, 2018.6, 2018.8, 2018.11, 2019.1, 2020.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RCCBatchBlast]] || 5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[QIIME2-Teaching|QIIME2]] || 2018.4, 2018.6, 2018.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[QIIME-Sapelo2|QIIME]] || 1.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RCCBatchBlastPlus]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[QTLcartographer-Sapelo2|QTLcartographer]] || 1.17j || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[READemption-Sapelo|READemption]] || 0.3.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Qualimap2-Sapelo2|Qualimap2]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[REAPR]] || 1.0.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Quantum Espresso-Sapelo2|Quantum Espresso]] || 6.2.0, 6.3.0-QMCPACK-3.6.0-patch, 6.4.1, 6.5 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RECON]] || 1.08 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[QUAST-Sapelo2|QUAST]] || 4.2, 4.6.1, 4.6.3, 5.0.0, 5.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RepeatExplorer]] || 02/2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[QMCPACK-Sapelo2|QMCPACK]] || 3.6.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Repeatmasker-Sapelo|Repeatmasker]] || 4.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="R"></span>[[R-Sapelo2 |R]] || 3.4.4, 3.5.0, 3.6.1, 3.6.2, 4.0.0 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Repeatmasker]] || 4.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[R-Teaching|R]] || 4.0.0 || [[:Category:Statistics|Statistics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Repeatmodeler-Sapelo|Repeatmodeler]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[racon-Sapelo2 |racon]] || 20180406, 1.3.2, 1.4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Repeatmodeler]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[racon-Teaching |racon]] || 1.4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[RaGOO-Sapelo2|RaGOO]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Reptile]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[randfold-Sapelo2|randfold]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RepeatScout]] || 1.05 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[RATT-Sapelo2|RATT]] || 20180710 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[riboPicker]] || 0.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[RAxML-NG-Sapelo2 |RAxML-NG]] || 0.7.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RIP]] || 4 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[RAxML-Sapelo2 |RAxML]] || 8.2.4, 8.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RITA]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[RAxML-Teaching|RAxML]] || 8.2.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RMBlast]] || 2.2.27 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Ray-Sapelo2 |Ray]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Rmpi]] || 0.5-9, 0.6-1, 0.6-3, 0.6-5 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Rcorrector-Sapelo2|Rcorrector]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RNA-SeQC]] || 1.1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Realphy-Sapelo2|Realphy]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RNAmmer-Sapelo|RNAmmer]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Reapr-Sapelo2|REAPR]] || 1.0.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RNAmmer]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[RECON-Sapelo2|RECON]] || 1.08 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[rnaQUAST]] || 0.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[RedDog-Sapelo2|RedDog]] || 1beta.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RNAshapes]] || 2.1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Redundans-Sapelo2|Redundans]] || 0.14a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[RNAz]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[RepeatExplorer-TAREAN-Sapelo2|RepeatExplorer-TAREAN]] || 11/09/2018 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[rnnotator]] || 2.4.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[RepeatMasker-Sapelo2|RepeatMasker]] || 4.0.5, 4.0.7, 4.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Rockhopper]] || 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[RepeatMasker-Teaching|RepeatMasker]] || 4.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Repeatmodeler-Sapelo2|Repeatmodeler]] || 1.0.11, 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[rpy]] || 1.0.3 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[RepeatModeler-Teaching|RepeatModeler]] || 1.0.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[RepeatScout-Sapelo2|RepeatScout]] || 1.05 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[rpy2]] || 2.4.3 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[RepeatScout-Teaching|RepeatScout]] || 1.05 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[REPET-Sapelo2|REPET]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Roche]] || 2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[RESCRIPt-Sapelo2|RESCRIPt]] || 20200805 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RogueNaRok]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[RevBayes-Sapelo2|RevBayes]] || 1.0.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ROOT]] || 5.34.09 || [[:Category:Library|Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[RevBayes-Teaching|RevBayes]] || 1.0.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[RGAugury-Sapelo2|RGAugury]] || 20191115 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RSAT | RSAT (RSA-tools)]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[rjags-Sapelo2|rjags]] || 4.6 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RSEM-Sapelo |RSEM]] || 1.2.20 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[RMBlast-Sapelo2|RMBlast]] || 2.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RSEM]] || 1.2.20 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Rmpi-Sapelo2|Rmpi]] || 0.6-6 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RSEG]] || 0.4.8NC || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[RNAmmer-Sapelo2|RNAmmer]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RSeQC]] || 2.6.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[RNAz-Sapelo2|RNAz]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[rspr]] || 1.2.2 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Roary-Sapelo2 |Roary]] || 3.12.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RUM]] || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Rosetta-Sapelo2 |Rosetta]] || 2017.45.59812, 2019.47.61047 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="S"></span>[[Sage]] || 6.3 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[RSEM-Sapelo2 |RSEM]] || 1.3.0, 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[sailfish]] || 0.6.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[RSeQC-Sapelo2 |RSeQC]] || 3.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[sambamba]] || 0.4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Rstudio-Sapelo2|Rstudio]] || 1.1.463, 1.2.5033 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[samblaster]] || 0.1.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Ruby-Sapelo2|Ruby]] || 2.5.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[samtools-Sapelo|samtools]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[runBNG-Sapelo2|runBNG]] || 1.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[samtools]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Sailfish-Sapelo2|Sailfish]] || 0.10.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SATé]] || 2.2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="S"></span>[[Sage-Sapelo2|Sage]] || 8.0, 9.0, 9.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[sbt]] || 0.13.9 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Salmon-Sapelo2|Salmon]] || 0.8.2, 0.10.2, 0.13.1, 0.14.1, 1.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[scala]] || 2.11.7 || [[:Category:Other|Other]], [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SalmonTools-Sapelo2|SalmonTools]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ScaLAPACK]] || 2.0.2 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SALSA-Sapelo2|SALSA]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Scripture-Sapelo| Scripture ]] || 3/20/2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[sambamba-Sapelo2|sambamba]] || 0.6.6, 0.6.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Scripture]] || 3/20/2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[samblaster-Sapelo2|samblaster]] || 0.1.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SEAStAR]] || 0.4.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SAMtools-Sapelo2|SAMtools]] || 0.1.19, 1.1, 1.3.1, 1.6, 1.9, 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[segemehl]] || 0.1.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SAMtools-Teaching|SAMtools]] || 0.1.20, 1.9, 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[seqMINER]] || 1.3.3e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SANN-Sapelo2|SANN]] || 20190528 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[seqtk-Sapelo|seqtk]] || 1.0-r63-dirty || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[sbt-Sapelo2|sbt]] || 1.1.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[seqtk]] || 1.0-r63-dirty || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[scala-Sapelo2|scala]] || 2.12.4 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SEQuel]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[scikit-image-Sapelo2|scikit-image]] || 0.13.1, 0.14.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[sga-Sapelo|sga]] || 0.10.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Scoary-Sapelo2|Scoary]] || 1.6.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SHE-RA]] || 012012 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SCons-Sapelo2|SCons]] || 2.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SHORE]] || 0.9.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SCOTCH-Sapelo2|SCOTCH]] || 6.0.4 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SHOREmap]] || 2.0, 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[scram-Sapelo2|scram]] || 0.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[sicer]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[screen_assembly-Sapelo2|screen_assembly]] || 1.2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[sickle]] || 1.200 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SeaDAS-Sapelo2|SeaDAS]] || 7.5.3 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SigHunt]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[seaview-Sapelo2|seaview]] || 4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SignalIP]] || 4.1c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[selscan-Sapelo2|selscan]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SISRS]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Seq-Gen-Sapelo2|Seq-Gen]] || 1.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SiZer]] || 07022012 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SeqKit-Sapelo2|SeqKit]] || 0.10.1, 0.10.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[slclust]] || 04282012 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[SeqKit-Teaching|SeqKit]] || 0.10.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[seqqs-Sapelo2|seqqs]] || 20140225 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SMRT-Analysis]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[seqtk-Sapelo2|seqtk]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SNAP]] || 2010-7-28 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SGA-Sapelo2|SGA]] || 0.10.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SNAPP]] || 1.1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Shannon-Sapelo2|Shannon]] || 20190826 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SnoReport]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[shapeit-Sapelo2|shapeit]] || v2.r904 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[snow]] || 0.3-8, 0.3-10, 0.3-12, 0.3-13 || [[:Category:Statistics|Statistics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Shasta-Sapelo2|Shasta]] || 0.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[snowhite]] || 1.1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ShortStack-Sapelo2|ShortStack]] || 3.8.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[snpEff]] || 4.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Sibelia-Sapelo2|Sibelia]] || 3.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SNPhylo]] || 20140701 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SICER-Sapelo2|SICER]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Soap2]] || 2.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SICERpy-Sapelo2|SICERpy]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Soap2 | SOAPaligner]] || 2.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Sickle-Sapelo2|Sickle]] || 1.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SOAPdenovo]] || 1.05 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SignalP-Sapelo2|SignalP]] || 4.1f || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SOAPdenovo-trans]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Silix-Sapelo2|Silix]] || 1.2.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SOAPdenovo2-Sapelo|SOAPdenovo2]] || r240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[SimLoRD-Sapelo2|SimLoRD]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SOAPdenovo2]] || r223, r240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SINE_Scan-Sapelo2|SINE_Scan]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SOAPsnp]] || 1.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[slda-Sapelo2|slda]] || 0.1.6 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SomaticCall]] || 42811 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[smoke-Sapelo2|smoke]] || 4.5 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[spimap]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Smoove-Sapelo2|Smoove]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SPAdes-Sapelo|SPAdes]] || 3.6.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[SMRTLINK-Sapelo2|SMRTLINK]] || 5.1.0.26412, 6.0.0.47841, 7.0.1.66975, 8.0.0.79519 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SPAdes]] || 3.6.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[SMRTLINK-Teaching|SMRTLINK]] || 5.0.1.9585, 5.1.0.26412 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Smudgeplot-Sapelo2|Smudgeplot]] || 0.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SparseAssembler]] || 2012/06/15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Snakemake-Sapelo2|Snakemake]] || 5.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Splitaake]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SNAP-Zoe-Sapelo2|SNAP-Zoe]] || 20060728 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[spolpred]] || 09/10/2013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[SNAP-Zoe-Teaching|SNAP-Zoe]] || 20060728 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Sniffles-Sapelo2|Sniffles]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[sprspace]] || 1.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SnoReport-Sapelo2|SnoReport]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Sputnik]] || 03/20/2013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Snippy-Sapelo2|Snippy]] || 4.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SRA]] || 2.3.4-2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SNP-ML-Sapelo2|SNP-ML]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SSAHA2]] || 2.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[snpEff-Sapelo2|snpEff]] || 4.3t || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SSAKE]] || v3-8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[snpEff-Teaching|SnpEff]] || 4.3t || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[SNPhylo-Sapelo2|SNPhylo]] || 20160204 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SSPACE]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[snp-sites-Sapelo2|snp-sites]] || 2.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ssr_pipeline]] ||0.95 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SOAPaligner-Sapelo2 |SOAPaligner]] || 2.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[stacks-Sapelo|stacks]] || 1.35 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[SOAPdenovo2-Sapelo2|SOAPdenovo2]] || r240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[stacks]] || 1.35 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[SOAPdenovo2-Teaching|SOAPdenovo2]] || r240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[somaticseq-Sapelo2|somaticseq]] || 3.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[STAMPY]] || 1.0.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SOP-GPU-Sapelo2|SOP-GPU]] || 20180404 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[STAR-Sapelo|STAR]] || 2.4.2a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[SortMeRNA-Sapelo2|SortMeRNA]] || 2.1, 3.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[STAR]] || 2.4.1c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SoX-Sapelo2|SoX]] || 14.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[STEM]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SPAdes-Sapelo2|SPAdes]] || 3.11.1, 3.12.0, 3.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[strauto]] || 0.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[SPAdes-Teaching|SPAdes]] || 3.11.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[spams-Sapelo2|spams]] || 2.6.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[StringTie-Sapelo|StringTie]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Spanki-Sapelo2|Spanki]] || 0.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[StringTie]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Spark-Sapelo2|Spark]] || 2.2.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[structure-Sapelo|structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Speciesprimer-Sapelo2|Speciesprimer]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SpeedSeq-Sapelo2|SpeedSeq]] || 0.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[structurama]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Spine-Sapelo2|Spine]] || 0.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[subread]] || 1.4.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SpliceGrapher-Sapelo2|SpliceGrapher]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[suma_package]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Splitstree4-Sapelo2|Splitstree4]] || 4.16.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SUNTANS-Sapelo|SUNTANS]] || 20150923 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[SPM-Sapelo2|SPM]] || 12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SUNTANS]] || 697-trunk, 784 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SRAToolKit-Sapelo2 |SRAToolKit]] || 2.8.2-1, 2.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SuperLU]] || 4.3 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[sRNAWorkbench-Sapelo2|sRNAWorkbench]] || 4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SuperLU_dist]] || 3.3 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SSAHA2-Sapelo2 |SSAHA2]] || 2.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SUPPA-Sapelo|SUPPA]] || 06122015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[SSPACE-longread-Teaching|SSPACE-longread]] || 1-1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SSPACE-STANDARD-Teaching|SSPACE-STANDARD]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[SSPACE-Sapelo2|SSPACE]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SVDetect]] || r0.7m || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Stacks-Sapelo2|Stacks]] || 1.48, 2.2, 2.3, 2.3b, 2.3d, 2.3e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SVDquartets]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Stacks-Teaching|Stacks]] || 2.0, 1.48 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Stampy-Sapelo2|Stampy]] || 1.0.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SWIG]] || 3.0.2 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[STAR-Fusion-Sapelo2|STAR-Fusion]] || 1.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="T"></span>[[T-Coffee]] || 9.03.r1318 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[STAR-Sapelo2|STAR]] || 2.5.3a, 2.6.0c, 2.6.1c, 2.7.1a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[tabix]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[STAR-Teaching|STAR]] || 2.5.3a, 2.6.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[StrAuto-Sapelo2|StrAuto]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[TagCleaner]] || 0.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[StringTie-Sapelo2|StringTie]] || 1.3.3, 1.3.4d, 2.0.3, 2.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
[[File:Up20.png|20px|link=#top]]  
| [[StringTie-Teaching|StringTie]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[TRE |Tandem Repeats Finder]] || 4.07b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Structure-Sapelo2|Structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[TAPDANCE]] || 03/20/2013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Structure-Teaching|Structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Subread-Sapelo2|Subread]] || 1.6.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[tassel]] || 4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SUNTANS-Sapelo2|SUNTANS]] || 20180305 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[tax2tree]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Supernova-Sapelo2|Supernova]] || 2.0.1, 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[TEClass]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SUPPA-Sapelo2|SUPPA]] || 2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[TEMP]] || 1.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SVDetect-Sapelo2|SVDetect]] || 0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[tgicl]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[svtools-Sapelo2|svtools]] || 0.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Theano]] || 0.6.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SWIG-Sapelo2|SWIG]] || 3.0.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[TIGER]] || 1.02 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Synima-Sapelo2|Synima]] || 20181205 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[tmhmm]] || 2.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="T"></span>[[Tabix-Sapelo2|Tabix]] || 0.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[tophat-Sapelo|tophat]] || 2.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[TASSEL-Sapelo2|TASSEL]] || 5.2.44 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[tophat]] || 2.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Tbl2asn-Sapelo2|Tbl2asn]] || 04172018, 03282019, 05012020 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[trans-abyss]] || 1.4.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[TCSF_IMRA-Sapelo2|TCSF_IMRA]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[TransDecoder-Sapelo|TransDecoder]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[TensorFlow-models-Sapelo2|TensorFlow-models]] || 20180620 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[TransDecoder]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[TensorFlow-Sapelo2|TensorFlow]] || 1.8.0, 1.10.1, 1.12.0, 1.14 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Transrate-Sapelo|Transrate]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Theano-Sapelo2|Theano]] || 0.9.0, 1.0.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Tracer]] || v 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[TigMint-Sapelo2|TigMint]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[TRE]] || 4.07b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[TMHMM-Sapelo2|TMHMM]] || 2.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[TreeFix-DTL]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[tmux-Sapelo2|tmux]] || 2.9 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[treemix]] || 1.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Tombo-Sapelo2|Tombo]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Triangle]] || 1.6 || [[:Category:Math_Library|Math Library]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Tophat-Sapelo2|Tophat]] || 2.1.0, 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[trimal]] || 1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[TopHat-Teaching|TopHat]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[torchvision-Sapelo2|torchvision]] || 0.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[trimmomatic-Sapelo|trimmomatic]] || 0.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[TPP-Sapelo2|TPP]] || 5.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[trimmomatic]] || 0.32 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[tqdm-Sapelo2|tqdm]] || 4.43.0, 4.44.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[TrimGalore-Sapelo|TrimGalore]] || 4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[TransDecoder-Sapelo2|TransDecoder]] || 2.1.0, 5.3.0, 5.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[TrimGalore]] || 0.3.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Transposome-Sapelo2|Transposome]] || 0.12.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[trimreads]] || 07232013 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Transrate-Sapelo2|Transrate]] || 1.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Trinity-Sapelo|Trinity]] || 2.06 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Transrate-Sapelo2|Transrate]] || 1.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Trinity]] || 2.06  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[TreeMix-Sapelo2|TreeMix]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Trinotate]] || r20131110 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[TreeTime-Sapelo2|TreeTime]] || 0.6.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[tRNAscan-SE]] || 1.23  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[trimAl-Sapelo2|TrimAl]] || 1.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="U"></span>[[UClust]] || 1.2.22q || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Trimmomatic-Sapelo2|Trimmomatic]] || 0.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[UNAFold]] || 3.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Trimmomatic-Teaching|Trimmomatic]] || 0.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Trim_Galore-Sapelo2|Trim_Galore]] || 0.4.5, 0.6.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[UPP]] || 2.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Trinity-Sapelo2|Trinity]] || r20140717, 2.5.1, 2.6.6, 2.8.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[usearch-Sapelo|usearch]] || 8.0.1623 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Trinity-Teaching|Trinity]] || 2.6.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Trinotate-Sapelo2|Trinotate]] || 3.1.1, 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[usearch]] || 7.0.1090_i86 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[tRNAscan-SE-Sapelo2|TRNAscan-SE]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[UCSC]] || 07-11-2014 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="U"></span>[[UCLUST-Sapelo2|UCLUST]] || 1.2.22q || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="V"></span>[[varscan]] || 2.3.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ucsc-Sapelo2|ucsc]] || 359 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[vcftools-Sapelo|vcftools]] || 0.1.12b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[UMI-tools-Sapelo2|UMI-tools]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[vcftools]] || 0.1.12a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[UPP-Sapelo2|UPP]] || 3.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[velvet-Sapelo|velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[USEARCH-Sapelo2|USEARCH]] || 10.0.240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[velvet]] || 1.2.08, 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Unicycler-Sapelo2|Unicycler]] || 0.4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[VelvetOptimiser]] || 2.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="V"></span>[[VarScan-Sapelo2|VarScan]] || 2.4.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ensembl-tools | VEP]] || 76 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[VCF-kit-Sapelo2|VCF-kit]] || 0.1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[VICUNA]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[vcf2diploid-Sapelo2|vcf2diploid]] || 0.2.6a || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[ViennaRNA]] || 1.8.5, 2.1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[vcf2maf-Sapelo2|vcf2maf]] || 20200520 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[virtualenv]] || 1.8.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[vcf2phylip-Sapelo2|vcf2phylip]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[vmatch]] || 2.1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[vcflib-Sapelo2|vcflib]] || 20180410 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[VMD]] || 1.9.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[VCFtools-Sapelo2|VCFtools]] || 0.1.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[vsearch]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[VCFtools-Teaching|VCFtools]] || 0.1.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Velvet-Sapelo2|Velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[VTK]] || 5.8.0 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Velvet-Teaching|Velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|- -->
| [[VelvetOptimiser-Sapelo2|VelvetOptimiser]] || 2.2.5, 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="W"></span>[[webLogo]] || 3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ViennaRNA-Sapelo2|ViennaRNA]] || 2.4.3, 2.4.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[weka]] || 3.6.10 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ViewBS-Sapelo2|ViewBS]] || 0.1.7, 0.1.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[wgs-Sapelo|wgs]] || 8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[Vmatch-Sapelo2|Vmatch]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[wgs]] || 8.2beta-binary || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[VSEARCH-Sapelo2|VSEARCH]] || 2.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[wigToBigWig]] || v4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="W"></span>[[WGS-Sapelo2|WGS]] || 8.3rc2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[WISE2]] || 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[WASP-Sapelo2|WASP]] || 0.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[WPS-Sapelo|WPS]] || 3.7 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[WebLogo-Sapelo2|WebLogo]] || 3.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[WPS]] || 3.4.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[WEKA-Sapelo2|WEKA]] || 3.8.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[WRF-Sapelo|WRF]] || 3.7 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[WPS-Sapelo2|WPS]] || 3.8 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[WRF]] || 3.4.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
<!-- | [[WPS-Teaching|WPS]] || 3.8 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[WRF-Chem-Sapelo2|WRF-Chem]] || 3.6.1, 3.8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[WU Blast-Sapelo|WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[WRF-Fire-Sapelo2|WRF-Fire]] || 20170221 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[WRF-Sapelo2|WRF]] || 3.6.1, 3.8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="X"></span> [[XP-CLR-Sapelo|XP-CLR]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[WRF-Teaching|WRF]] || 3.8 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Xscape]] || 11182014 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[WRFDA-Teaching|WRFDA]] || 3.8 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[WU Blast-Sapelo2|WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="Y"></span>[[yasra]] || 2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="X"></span> <!-- [[xdot-Teaching|xdot]] || 1.1 || [[:Category:Graphics|Graphics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="Z"></span>[[zlib-Sapelo|zlib]] || 1.2.5, 1.2.8 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| --> [[xforms-Sapelo2|xforms]] || 1.2.4 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Zorro]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="Y"></span>[[YASRA-Sapelo2|YASRA]] || 2.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
<!--LIST END-->
|}
|}
[[#top|Back To Top]] [[File:Up20.png|20px|link=#top]]
[[#top|Back To Top]] [[File:Up20.png|20px|link=#top]]


[[Category:Zcluster]][[Category:Sapelo]]
[[Category:Sapelo2]][[Category:Teaching]][[Category:Software]]

Latest revision as of 22:18, 27 October 2020

Below is a partial list of software packages installed on Sapelo2, Teaching (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2/Teaching, along with a short description, please run the following command on Sapelo2/Teaching: 

module spider

You can also use the command above to search for a specific application. For more information, please see Lmod.

Note: Although we have not made individual software pages for the applications installed on on the Slurm test cluster (Sap2test), there are currently over 550 software packages installed there. For information on software installed there, please see Software on sap2test.


Installed Software List

Last updated 2020-10-27. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name Version Category Cluster Top
Biopython 1.75 Bioinformatics Teaching Up20.png
BLAST+ 2.9.0 Bioinformatics Teaching Up20.png
BLAST 2.2.26 Bioinformatics Teaching Up20.png
BLAT 3.4, 3.5 Bioinformatics Sapelo2 Up20.png
BlobTools 1.1.1 Bioinformatics Sapelo2 Up20.png
Blosc 1.12.1 Library Sapelo2 Up20.png
BOLT-LMM 2.3.4 Bioinformatics Sapelo2 Up20.png
Boost 1.54.0, 1.61.0, 1.63.0, 1.65.1 Library Sapelo2 Up20.png
Boto3 1.9.14 Other Sapelo2 Up20.png
bowtie2 2.2.3, 2.3.3, 2.3.4.1, 2.3.4.2, 2.3.5.1 Bioinformatics Sapelo2 Up20.png
Bowtie2 2.3.5.1, 2.4.1 Bioinformatics Teaching Up20.png
Bowtie 1.2.2 Bioinformatics Sapelo2 Up20.png
Bracken 2.2 Bioinformatics Sapelo2 Up20.png
braker 2.0.5, 2.1.2 Bioinformatics Sapelo2 Up20.png
BreakDancer 1.4.5 Bioinformatics Sapelo2 Up20.png
breseq 0.34.1 Bioinformatics Sapelo2 Up20.png
BS-Seeker2 2.1.5 Bioinformatics Sapelo2 Up20.png
BUSCO 2.0, 3.0.2, 4.0.5, 4.0.6 Bioinformatics Sapelo2 Up20.png
BUSCO 4.0.5, 4.0.6 Bioinformatics Sap2test Up20.png
BWA 0.7.15, 0.7.17 Bioinformatics Sapelo2 Up20.png
Caffe 04082018 Other Sapelo2 Up20.png
cactus 1.0 Bioinformatics Sapelo2 Up20.png
cairo 1.14.6, 1.14.10, 1.14.12 Bioinformatics Sapelo2 Up20.png
Canu 1.7, 1.7.1, 1.8, 1.9, 2.1 Bioinformatics Sapelo2 Up20.png
CAP-miRSeq 05/20184 Bioinformatics Sapelo2 Up20.png
CAP3 03092015 Bioinformatics Sapelo2 Up20.png
cBar 1.2 Bioinformatics Sapelo2 Up20.png
CD-HIT 4.6.1-2012-08-27, 4.6.8 Bioinformatics Sapelo2 Up20.png
CDNA_Cupcake 5.9, 7.2, 8.4 Bioinformatics Sapelo2 Up20.png
CDO 1.9.7 Other Sapelo2 Up20.png
CellProfiler 3.1.8 Bioinformatics Sapelo2 Up20.png
Cellrange 3.0.1, 3.1.0 Bioinformatics Sapelo2 Up20.png
CENSOR 4.2.29 Bioinformatics Sapelo2 Up20.png
CFITSIO 3.38 Library Sapelo2 Up20.png
CFOUR 1.2, 2.00-beta, 2.1 Chemistry Sapelo2 Up20.png
CGAL 4.11 Library Sapelo2 Up20.png
Cgmaptools 0.1.1 Bioinformatics Sapelo2 Up20.png
Cgview_comparison_tool 2017.09.19 Bioinformatics Sapelo2 Up20.png
CheckM 1.0.12 Bioinformatics Sapelo2 Up20.png
Chimera 1.13 Bioinformatics Sapelo2 Up20.png
Chromosomer 0.1.3, 0.1.4a0 Bioinformatics Sapelo2 Up20.png
circlator 1.5.3 Bioinformatics Sapelo2 Up20.png
Circos 0.69-6 Bioinformatics Sapelo2 Up20.png
Cleaveland4 4.4 Bioinformatics Sapelo2 Up20.png
Click 7.0 Other Sapelo2 Up20.png
ClonalFrameML 1.11 Bioinformatics Sapelo2 Up20.png
ClonalOrigin 0.0.1 Bioinformatics Sapelo2 Up20.png
Clust 1.9.0 Bioinformatics Sapelo2 Up20.png
ClustAGE 0.8 Bioinformatics Sapelo2 Up20.png
Clustal-Omega 1.2.4 Bioinformatics Sapelo2 Up20.png
ClustalW2 2.1 Bioinformatics Sapelo2 Up20.png
CMake 3.0.0, 3.4.3, 3.5.2, 3.6.1, 3.6.2, 3.7.2, 3.8.0, 3.9.1, 3.9.5, 3.10.2 Other Sapelo2 Up20.png
CNIT 2020-05-13 Bioinformatics Sapelo2 Up20.png
CNVnator 0.3.3, 0.4.1 Bioinformatics Sapelo2 Up20.png
Cogent 3.5, 3.9, 6.0 Bioinformatics Sapelo2 Up20.png
Coinfinder 1.0.1 Bioinformatics Sapelo2 Up20.png
CONCOCT 1.1.0 Bioinformatics Sapelo2 Up20.png
Consed 29.0 Bioinformatics Sapelo2 Up20.png
cooler 0.8.5 Bioinformatics Sapelo2 Up20.png
CPLEX 12.6.3 Engineering Sapelo2 Up20.png
crest 1.0 Bioinformatics Sapelo2 Up20.png
CRISPResso 1.0.13 Bioinformatics Sapelo2 Up20.png
CUDA 7.0.28, 7.5.18, 8.0.61, 8.0.61_375.26-GCC-5.4.0-2.26, 9.0.176, 9.1.85, 9.2.88, 10.0.130, 10.1.243 Programming Sapelo2 Up20.png
cuDNN 7.0.4, 7.2.1.38, 7.4.2.24 Programming Sapelo2 Up20.png
Cufflinks 2.2.1 Bioinformatics Sapelo2 Up20.png
cURL 7.49.1 Other Sapelo2 Up20.png
cutadapt 1.9.1, 1.14, 1.16, 2.6 Bioinformatics Sapelo2 Up20.png
Cython 0.27.3, 0.28.5 Programming Sapelo2 Up20.png
CythonGSL 0.2.2 Other Sapelo2 Up20.png
Cytoscape 3.7.2, 3.8.0 Bioinformatics Sapelo2 Up20.png
Cytoscape 3.7.2 Bioinformatics Teaching Up20.png
Dadi 1.7.0, 2.0.2 Bioinformatics Sapelo2 Up20.png
Danpos2 2.2.2 Bioinformatics Sapelo2 Up20.png
Darknet 3 Other Sapelo2 Up20.png
DAS_Tool 1.1.1 Bioinformatics Sapelo2 Up20.png
datamash 1.7 Other Sapelo2 Up20.png
DBG2OLC 20170208 Bioinformatics Sapelo2 Up20.png
DDocent 2.7.8 Bioinformatics Sapelo2 Up20.png
DDSCAT 7.3.2 Chemistry Sapelo2 Up20.png
decontaMiner 1.2 Bioinformatics Sapelo2 Up20.png
deepTools 3.0.2, 3.2.1, 3.3.1 Bioinformatics Sapelo2 Up20.png
DeepVariant 0.7.0 Bioinformatics Sapelo2 Up20.png
Delft3d 20190610 Other Sapelo2 Up20.png
delineate 1.2.2 Bioinformatics Sapelo2 Up20.png
DendroPy 4.3.0, 4.4.0 Bioinformatics Sapelo2 Up20.png
detectMITE 20170425 Bioinformatics Sapelo2 Up20.png
detonate 1.11 Bioinformatics Sapelo2 Up20.png
DIAMOND 0.8.31, 0.9.19, 0.9.22, 0.9.24, 0.9.31 Bioinformatics Sapelo2 Up20.png
DISCOVARdenovo 52488 Bioinformatics Sapelo2 Up20.png
DIYABC 2.1.0 Bioinformatics Sapelo2 Up20.png
DiscoVista 20190429 Bioinformatics Sapelo2 Up20.png
Distruct 2.2 Bioinformatics Sapelo2 Up20.png
DLCpar 1.0 Bioinformatics Sapelo2 Up20.png
Domainoid 20200127 Bioinformatics Sapelo2 Up20.png
Doxygen 1.8.7, 1.8.11, 1.8.13 Other Sapelo2 Up20.png
dRep 2.3.0 Bioinformatics Sapelo2 Up20.png
DSSP 3.0.7 Bioinformatics Sapelo2 Up20.png
DyNet 2.1 Other Sapelo2 Up20.png
EDGE-pro 1.3.1 Bioinformatics Sapelo2 Up20.png
EggNOG-Mapper 1.0.3, 2.0.1 Bioinformatics Sapelo2 Up20.png
Eigen 3.2.3, 3.3.5 Library Sapelo2 Up20.png
EIGENSOFT 6.1.4, 7.2.1 Bioinformatics Sapelo2 Up20.png
EMBOSS 6.6.0 Bioinformatics Sapelo2 Up20.png
EMMAX beta beta Bioinformatics Sapelo2 Up20.png
Ensembl-VEP 20180914 Bioinformatics Sapelo2 Up20.png
EnTAP 0.8.4 beta Bioinformatics Sapelo2 Up20.png
epic2 0.0.36 Bioinformatics Sapelo2 Up20.png
EricScript 0.5.5 Bioinformatics Sapelo2 Up20.png
ESMF 7.0.2 Other Sapelo2 Up20.png
eSpeak 1.48.04 Other Sapelo2 Up20.png
Ete 3.1.1 Bioinformatics Sapelo2 Up20.png
EVcouplings 0.0.5 Bioinformatics Sapelo2 Up20.png
EVidenceModeler 0.1.3 Bioinformatics Sapelo2 Up20.png
Exonerate 2.4.0 Bioinformatics Sapelo2 Up20.png
FALCON 02282018_unzip Bioinformatics Sapelo2 Up20.png
Fast-Plast 1.2.6, 1.2.8 Bioinformatics Sapelo2 Up20.png
FASTA 36.3.5e Bioinformatics Sapelo2 Up20.png
fast-GeP 1.0.1 Bioinformatics Sapelo2 Up20.png
FastME 2.1.5 Bioinformatics Sapelo2 Up20.png
FastQC 0.11.5,0.11.8 Bioinformatics Sapelo2 Up20.png
FastQValidator 0.1.1a Bioinformatics Sapelo2 Up20.png
FastQ_Screen 0.14.0 Bioinformatics Sapelo2 Up20.png
FastSTRUCTURE 1.0 Bioinformatics Sapelo2 Up20.png
FastTree 2.1.10 Bioinformatics Sapelo2 Up20.png
FastViromeExplorer 20180918 Bioinformatics Sapelo2 Up20.png
FASTX-Toolkit 0.0.14 Bioinformatics Sapelo2 Up20.png
FFmpeg 3.1.3, 3.4.1 Other Sapelo2 Up20.png
FFTW 3.3.4, 3.3.6, 3.3.7 Math Library Sapelo2 Up20.png
FIAT 1.6.0 Other Sapelo2 Up20.png
fineSTRUCTURE 2.1.3 Bioinformatics Sapelo2 Up20.png
FLASH 1.2.11 Bioinformatics Sapelo2 Up20.png
FLTK 1.3.4 Other Sapelo2 Up20.png
Flye 2.3.6, 2.6, 2.8.1 Bioinformatics Sapelo2 Up20.png
FoX 4.1.2 Library Sapelo2 Up20.png
Freebayes 1.2.0, 1.3.2 Bioinformatics Sapelo2 Up20.png
freesasa 2.0.3 Bioinformatics Sapelo2 Up20.png
FriBidi 1.0.1 Library Sapelo2 Up20.png
Funannotate 1.5.0 Bioinformatics Sapelo2 Up20.png
FuzzyWuzzy 0.17.0 Other Sapelo2 Up20.png
fxtract 2.3 Bioinformatics Sapelo2 Up20.png
g2gtools 0.2.9 Bioinformatics Sapelo2 Up20.png
GAG 2.0.1 Bioinformatics Sapelo2 Up20.png
GAMESS 14Feb2018 Chemistry Sapelo2 Up20.png
GapFiller 2.1.1 Bioinformatics Sapelo2 Up20.png
GAPIT 20180524 Bioinformatics Sapelo2 Up20.png
GAPPadder 0.1 Bioinformatics Sapelo2 Up20.png
GARLI 2.01 Bioinformatics Sapelo2 Up20.png
GATK 3.4-0, 3.8-0, 3.8-1, 4.0.3.0, 4.0.11.0, 4.1.0.0, 4.1.2.0, 4.1.5.0, 4.1.6.0 Bioinformatics Sapelo2 Up20.png
GAUSSIAN 09, 16 Chemistry Sapelo2 Up20.png
GAUSSIAN 16 Chemistry Teaching Up20.png
GaussView 5, 6.1 Chemistry Sapelo2 Up20.png
GaussView 6.1 Chemistry Teaching Up20.png
GBlocks 0.91b Bioinformatics Sapelo2 Up20.png
GCTA 1.26.0, 1.93.0-beta Bioinformatics Sapelo2 Up20.png
GD 2.66 Bioinformatics Sapelo2 Up20.png
GDAL 2.1.0, 2.2.2 Library Sapelo2 Up20.png
gdc-client 1.3.0 Bioinformatics Sapelo2 Up20.png
Gdk-pixbuf 2.36.0 Library Sapelo2 Up20.png
GEAN 0.1 Bioinformatics Sapelo2 Up20.png
GEM 1.0, 1.1 Bioinformatics Sapelo2 Up20.png
GEM-library 20130406-045632 Bioinformatics Sapelo2 Up20.png
GeneMark.hmm.eukaryotic 4.30 Bioinformatics Sapelo2 Up20.png
GeneMarkES 4.33, 4.57 Bioinformatics Sapelo2 Up20.png
GeneMarkS-T 4.33 Bioinformatics Sapelo2 Up20.png
GeneMarkS 4.30 Bioinformatics Sapelo2 Up20.png
GenericRepeatFinder 1.0 Bioinformatics Sapelo2 Up20.png
GenMap 1.0.1 Bioinformatics Sapelo2 Up20.png
Genocore 2020-05-13 Bioinformatics Sapelo2 Up20.png
Genome Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 Bioinformatics Sapelo2 Up20.png
GenomeTools 1.5.9 Bioinformatics Sapelo2 Up20.png
Genrich 0.5, 0.6 Bioinformatics Sapelo2 Up20.png
GEOS 3.6.2 Library Sapelo2 Up20.png
GET_HOMOLOGUES 1.7.6 Bioinformatics Sapelo2 Up20.png
GET_PHYLOMARKERS 1.2.11, 1.3.1 Bioinformatics Sapelo2 Up20.png
gfaviz 1.0.0 Other Sapelo2 Up20.png
Gffcompare 0.10.4 Bioinformatics Sapelo2 Up20.png
gffread 0.9.12 Bioinformatics Sapelo2 Up20.png
GFlow 0.1.7 Library Sapelo2 Up20.png
Ghostscript 9.20, 9.22 Other Sapelo2 Up20.png
GISTIC 2.0.3 Bioinformatics Sapelo2 Up20.png
Gkin 1.1 Bioinformatics Sapelo2 Up20.png
GL2PS 1.4.0 Library Sapelo2 Up20.png
GLib 2.49.5, 2.53.5, 2.54.3 Library Sapelo2 Up20.png
GLIMMER 3.02b Bioinformatics Sapelo2 Up20.png
GLPK 4.63, 4.65 Programming Sapelo2 Up20.png
GMAP-GSNAP 2016-11-07, 2018-07-04 Bioinformatics Sapelo2 Up20.png
GMP 4.3.2, 6.1.1, 6.1.2 Library Sapelo2 Up20.png
gnuplot 5.0.5 Graphics Sapelo2 Up20.png
GObject-Introspection 1.49.1, 1.54.1 Other Sapelo2 Up20.png
grace 5.1.25 Graphics Sapelo2 Up20.png
GraftM 0.11.1 Bioinformatics Sapelo2 Up20.png
GraphicsMagicK 1.3.28 Other Sapelo2 Up20.png
Graphviz 2.40.1 Other Sapelo2 Up20.png
GROCSVs 0.2.5 Bioinformatics Sapelo2 Up20.png
Gromacs 2016.4, 2018.1 Chemistry Sapelo2 Up20.png
GSL 1.16, 2.1, 2.3. 2.4, 2.5 Math Library Sapelo2 Up20.png
GStreamer 1.14.0 Bioinformatics Sapelo2 Up20.png
GTDBTk 0.2.2, 1.0.2 Bioinformatics Sapelo2 Up20.png
gtftogenepred 377-3 Bioinformatics Sapelo2 Up20.png
GTK+ 2.24.31 Library Sapelo2 Up20.png
GTS 0.7.6 Library Sapelo2 Up20.png
Guile 1.8.8 Other Sapelo2 Up20.png
h5py 2.7.1 Other Sapelo2 Up20.png
HapCUT 0.7 Bioinformatics Sapelo2 Up20.png
HapCUT2 20190606 Bioinformatics Sapelo2 Up20.png
HarfBuzz 1.3.1, 1.7.5 Other Sapelo2 Up20.png
HARP 140925_103521 Bioinformatics Sapelo2 Up20.png
HarvestTools 1.2 Bioinformatics Sapelo2 Up20.png
HH-suite 3.0-beta.3 Bioinformatics Sapelo2 Up20.png
HiC-Pro 2.11.0-beta Bioinformatics Sapelo2 Up20.png
Hinge 0.5.0-4-deb_cv1 Bioinformatics Sapelo2 Up20.png
hindex 1.42 Bioinformatics Sapelo2 Up20.png
HISAT2 2.1.0 Bioinformatics Sapelo2 Up20.png
HISAT2 2.1.0 Bioinformatics Teaching Up20.png
HMMER 2.3, 3.1b2, 3.2.1 Bioinformatics Sapelo2 Up20.png
Homer 4.9.1, 4.10, 4.11 Bioinformatics Sapelo2 Up20.png
HPCGridRunner 1.0.2 Tools Sapelo2 Up20.png
htop 2.0.1 Other Sapelo2 Up20.png
HTSeq 0.9.1 Bioinformatics Sapelo2 Up20.png
HTSlib 1.3.2, 1.6, 1.8 Library Sapelo2 Up20.png
HTStream 1.3.0 Bioinformatics Sapelo2 Up20.png
HUMAnN2 0.11.2 Bioinformatics Sapelo2 Up20.png
HybPiper 1.3.1 Bioinformatics Sapelo2 Up20.png
HyPhy 2.5.15 Bioinformatics Sapelo2 Up20.png
Hypre 2.11.1 Library Sapelo2 Up20.png
ICORN2 0.95 Bioinformatics Sapelo2 Up20.png
IDBA-UD 1.1.3 Bioinformatics Sapelo2 Up20.png
IDR 2.0.2 Bioinformatics Sapelo2 Up20.png
IgBlast 1.16.0 Bioinformatics Sapelo2 Up20.png
IGV 2.4.4 Bioinformatics Sapelo2 Up20.png
IGVTools 2.3.98 Bioinformatics Sapelo2 Up20.png
illumiprocessor 2.0.9 Bioinformatics Sapelo2 Up20.png
ImageMagick 7.0.5, 7.0.7 Other Sapelo2 Up20.png
Infernal 1.1.2 Bioinformatics Sapelo2 Up20.png
IonCom 20190521 Bioinformatics Sapelo2 Up20.png
iprscan (InterProScan) 5.29-68.0, 5.31-70.0, 5.32-71.0, 5.41-78.0, 5.44-90.0 Bioinformatics Sapelo2 Up20.png
ipyrad 0.7.24, 0.7.28, 0.7.30, 0.9.19 Bioinformatics Sapelo2 Up20.png
IPython 5.3.0, 6.2.1, 7.5.0 Other Sapelo2 Up20.png
IQ-Tree 1.5.5, 1.6.5, 1.6.12 Bioinformatics Sapelo2 Up20.png
IQ-Tree 1.6.12 Bioinformatics Teaching Up20.png
IRMA 0.6.7, 0.9.3 Bioinformatics Sapelo2 Up20.png
ISGPipeline 0.16.10-3 Bioinformatics Sapelo2 Up20.png
IsONclust 0.0.4 Bioinformatics Sapelo2 Up20.png
IsoSeq3 3.1.2 Bioinformatics Sapelo2 Up20.png
ITSTool 2.0.4 Utility Sapelo2 Up20.png
JAGS 4.3.0 Statistics Sapelo2 Up20.png
JasPer 1.900.1, 2.0.12 Other Sapelo2 Up20.png
Java 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144, 1.8.0_202 Programming Sapelo2 Up20.png
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jcvi 0.8.12 Bioinformatics Sapelo2 Up20.png
Jellyfish 2.2.6 Bioinformatics Sapelo2 Up20.png
JModelTest 2.1.10 Bioinformatics Sapelo2 Up20.png
Juicer 1.5.6 Bioinformatics Sapelo2 Up20.png
Julia 1.3.1 Programming Sapelo2 Up20.png
JUnit 4.12 Other Sapelo2 Up20.png
Jupyter 4.3.0 Other Sapelo2 Up20.png
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kallisto 0.43.1, 0.46.0 Bioinformatics Sapelo2 Up20.png
KAT 2.4.1 Bioinformatics Sapelo2 Up20.png
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keras 2.0.6, 2.2.2 Other Sapelo2 Up20.png
KinFin 1.0.3 Bioinformatics Sapelo2 Up20.png
KmerGenie 1.7044 Bioinformatics Sapelo2 Up20.png
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KronaTools 2.7 Bioinformatics Sapelo2 Up20.png
LAME 3.100 Other Sapelo2 Up20.png
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LASTZ 1.04.00 Bioinformatics Sapelo2 Up20.png
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LDhelmet 1.10 Bioinformatics Sapelo2 Up20.png
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Lep-MAP3 0.2 Bioinformatics Sapelo2 Up20.png
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LibStatGen 1.0.14 Bioinformatics Sapelo2 Up20.png
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LINKS 1.8.7 Bioinformatics Sapelo2 Up20.png
LittleCMS 2.8 Other Sapelo2 Up20.png
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LMDB 0.9.22 Bioinformatics Sapelo2 Up20.png
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LongRanger 2.2.2 Bioinformatics Sapelo2 Up20.png
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LoRMA 0.5 Bioinformatics Sapelo2 Up20.png
LRCstats 1.1 Bioinformatics Sapelo2 Up20.png
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LS-PrePost 4.5 Engineering Sapelo2 Up20.png
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LTR_Finder 1.0.7 Bioinformatics Sapelo2 Up20.png
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LZO 2.10 Bioinformatics Sapelo2 Up20.png
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MacSyFinder 1.0.5 Bioinformatics Sapelo2 Up20.png
MACS2 2.1.1, 2.1.2, 2.2.7.1 Bioinformatics Sapelo2 Up20.png
MAFFT 7.273, 7.313, 7.397, 7.407, 7.453, 7.470 Bioinformatics Sapelo2 Up20.png
Magic-BLAST 1.4.0 Bioinformatics Sapelo2 Up20.png
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MAJIQ 2.1 Bioinformatics Sapelo2 Up20.png
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MAnorm 1.1.4 Bioinformatics Sapelo2 Up20.png
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Mash 2.1 Bioinformatics Sapelo2 Up20.png
MashMap 2.0 Bioinformatics Sapelo2 Up20.png
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MaSuRCA 3.2.2, 3.2.9, 3.3.1 Bioinformatics Sapelo2 Up20.png
Mathematica 12.1 Programming Sapelo2 Up20.png
Matlab R2017b, R2018b, R2019b Programming Sapelo2 Up20.png
Matplotlib 1.5.3, 2.0.2, 2.1.0, 2.1.2, 2.2.3, 3.0.0 Other Sapelo2 Up20.png
Mauve 2015-02-13 Bioinformatics Sapelo2 Up20.png
Maven 3.5.2 Bioinformatics Sapelo2 Up20.png
Mawk 1.3.4 Other Sapelo2 Up20.png
MaxBin 2.2.7 Bioinformatics Sapelo2 Up20.png
MCL 14.137 Bioinformatics Sapelo2 Up20.png
MCScanX 0.8 Bioinformatics Sapelo2 Up20.png
Medaka 0.9.0 Bioinformatics Sapelo2 Up20.png
Medusa 1.6 Bioinformatics Sapelo2 Up20.png
MEGA 7.0.26-1 Bioinformatics Sapelo2 Up20.png
MEGAHIT 1.1.1, 1.1.3 Bioinformatics Sapelo2 Up20.png
Megalodon 0.1.0, 1.0.0, 2.2.0 Bioinformatics Sapelo2 Up20.png
MeGAMerge 3.0.1 Bioinformatics Sapelo2 Up20.png
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Mercurial 4.4.2 Other Sapelo2 Up20.png
Mesa 12.0.2, 17.3.6 Other Sapelo2 Up20.png
MET 7.0 Other Sapelo2 Up20.png
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METABOLIC 3.0 Bioinformatics Sapelo2 Up20.png
MetaCLADE 1.1 Bioinformatics Sapelo2 Up20.png
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MetaPhlAn2 2.7.8 Bioinformatics Sapelo2 Up20.png
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minced 0.2.1 Bioinformatics Sapelo2 Up20.png
Minia 3.2.0 Bioinformatics Sapelo2 Up20.png
miniasm 0.3 Bioinformatics Sapelo2 Up20.png
Miniconda3 4.4.10 Other Sapelo2 Up20.png
minimap2 2.10, 2.13, 2.17 Bioinformatics Sapelo2 Up20.png
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mip 1.7.3 Other Sapelo2 Up20.png
mirdeep-p 1.3 Bioinformatics Sapelo2 Up20.png
miRDeep2 0.0.8 Bioinformatics Sapelo2 Up20.png
MiRDP2 1.1.2 Bioinformatics Sapelo2 Up20.png
MISO 0.5.4 Bioinformatics Sapelo2 Up20.png
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MITE-Tracker 0.1 Bioinformatics Sapelo2 Up20.png
MITObim 1.9.1 Bioinformatics Sapelo2 Up20.png
MitoZ 2.3 Bioinformatics Sapelo2 Up20.png
mmquant 1.3 Bioinformatics Sapelo2 Up20.png
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Mothur 1.39.5 Bioinformatics Sapelo2 Up20.png
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MSG 0.4.9 Bioinformatics Sapelo2 Up20.png
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MultiQC 1.5 Bioinformatics Sapelo2 Up20.png
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Nanocorr 5.9 Bioinformatics Sapelo2 Up20.png
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NanoPlot 1.26.3 Bioinformatics Sapelo2 Up20.png
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NBO 7.0 Chemistry Sapelo2 Up20.png
NCCL 2.4.2 Other Sapelo2 Up20.png
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ncview 2.1.7 Graphics Sapelo2 Up20.png
NCO 4.7.4 Other Sapelo2 Up20.png
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Neptune 1.2.5 Bioinformatics Sapelo2 Up20.png
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Newbler 3.0 Bioinformatics Sapelo2 Up20.png
Nextflow 18.10.1 Bioinformatics Sapelo2 Up20.png
NextGenMap 0.5.5 Bioinformatics Sapelo2 Up20.png
ngmlr 0.2.6-beta Bioinformatics Sapelo2 Up20.png
NGmerge 0.3 Bioinformatics Sapelo2 Up20.png
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NGSEPcore 3.3.2 Bioinformatics Sapelo2 Up20.png
ngsplot 2.6.3 Bioinformatics Sapelo2 Up20.png
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Nseg 20180530 Bioinformatics Sapelo2 Up20.png
NucleoATAC 0.3.4 Bioinformatics Sapelo2 Up20.png
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OpenCV 3.4.1, 3.4.7 Other Sapelo2 Up20.png
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OpenSlide 3.4.1 Other Sapelo2 Up20.png
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ORGanelle_ASeMbler 0.2.03 Bioinformatics Sapelo2 Up20.png
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OrthoMCL 2.0.9 Bioinformatics Sapelo2 Up20.png
p7zip 16.02 Other Sapelo2 Up20.png
PAGIT 1.64 Bioinformatics Sapelo2 Up20.png
Pairix 0.3.7 Bioinformatics Sapelo2 Up20.png
pairtools 0.3.0 Bioinformatics Sapelo2 Up20.png
Pal_finder 0.02.04 Bioinformatics Sapelo2 Up20.png
PAML 4.9h Bioinformatics Sapelo2 Up20.png
PAML 4.9i Bioinformatics Teaching Up20.png
PANDAseq 2.5 Bioinformatics Sapelo2 Up20.png
Pangloss 0.9.1 Bioinformatics Sapelo2 Up20.png
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Panoply 4.11.6 Graphics Sapelo2 Up20.png
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Parsnp 1.2 Bioinformatics Sapelo2 Up20.png
PartitionFinder 2.1.1 Bioinformatics Sapelo2 Up20.png
PanOCT 3.23 Bioinformatics Sapelo2 Up20.png
PASA 2.3.3 Bioinformatics Sapelo2 Up20.png
PASTA 1.8.2 Bioinformatics Sapelo2 Up20.png
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Pb-assembly 0.0.2, 0.0.8 Bioinformatics Sapelo2 Up20.png
pbh5tools 0.8.0 Bioinformatics Sapelo2 Up20.png
PBLAT 2.0.0 Bioinformatics Sapelo2 Up20.png
pbmm2 1.0.0, 1.3.0 Bioinformatics Sapelo2 Up20.png
pcawg-dkfz-workflow 2.2.0 Bioinformatics Sapelo2 Up20.png
PBSuite 15.8.24 Bioinformatics Sapelo2 Up20.png
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PeakRanger 1.18 Bioinformatics Sapelo2 Up20.png
PEAR 0.9.8 Bioinformatics Sapelo2 Up20.png
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Perl 5.30.0 Programming Teaching Up20.png
PETSc 3.8.4 Math Library Sapelo2 Up20.png
PGDBG 18.10 Debugger Sapelo2 Up20.png
PGDSpider 2.1.1.5 Bioinformatics Sapelo2 Up20.png
PhaseGenomics 20181220 Bioinformatics Sapelo2 Up20.png
phaser 1.2.0 Bioinformatics Sapelo2 Up20.png
PhaseTank 1.0 Bioinformatics Sapelo2 Up20.png
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PHENIX 1.18.2-3874 Bioinformatics Sapelo2 Up20.png
Phobius 1.01 Bioinformatics Sapelo2 Up20.png
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PHYLIP 3.697 Bioinformatics Sapelo2 Up20.png
PhyloBayes-MPI 20161021 Bioinformatics Sapelo2 Up20.png
PhyloCSF 20180919 Bioinformatics Sapelo2 Up20.png
PhyloSift 1.0.1 Bioinformatics Sapelo2 Up20.png
PhyloSkeleton 1.1 Bioinformatics Sapelo2 Up20.png
Phyluce 1.6.1 Bioinformatics Sapelo2 Up20.png
PhyML 3.3.20170530 Bioinformatics Sapelo2 Up20.png
PhyParts 0.0.1 Bioinformatics Sapelo2 Up20.png
picard 2.16.0, 2.21.6 Bioinformatics Sapelo2 Up20.png
PICRUSt 1.1.3, 2.3.0 Bioinformatics Sapelo2 Up20.png
pigz 2.3.3 Other Sapelo2 Up20.png
PIL 1.1.7 Library Sapelo2 Up20.png
PILER 2.5 Bioinformatics Sapelo2 Up20.png
Pilon 1.22 Bioinformatics Sapelo2 Up20.png
PlantCV 3.8.0 Bioinformatics Sapelo2 Up20.png
Platypus 0.8.1 Bioinformatics Sapelo2 Up20.png
PLEK 1.2 Bioinformatics Sapelo2 Up20.png
PLINK 1.07, 1.9b, 2.0-alpha1, 2.0-alpha2, 2.0-alpha2.3 Bioinformatics Sapelo2 Up20.png
Plmc 0.1 Bioinformatics Sapelo2 Up20.png
Porechop 0.2.4 Bioinformatics Sapelo2 Up20.png
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Pplacer 1.1.alpha19 Bioinformatics Sapelo2 Up20.png
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PRANK 170427 Bioinformatics Sapelo2 Up20.png
PRAPI 2.0 Bioinformatics Sapelo2 Up20.png
Primer3 2.3.7 Bioinformatics Sapelo2 Up20.png
PRINSEQ 0.20.4 Bioinformatics Sapelo2 Up20.png
ProbABEL 0.5.0 Bioinformatics Sapelo2 Up20.png
Prodigal 2.6.3 Bioinformatics Sapelo2 Up20.png
progressiveCactus 0.1 Bioinformatics Sapelo2 Up20.png
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PROJ 4.9.2 Other Sapelo2 Up20.png
Prokka 1.13, 1.14.6 Bioinformatics Sapelo2 Up20.png
proovread 2.14.1 Bioinformatics Sapelo2 Up20.png
protobuf 3.3.0, 3.4.0, 3.6.0 Other Sapelo2 Up20.png
PSI4 1.3.2 Chemistry Sapelo2 Up20.png
psmc 0.6.5 Bioinformatics Sapelo2 Up20.png
pVACtools 1.5.10 Bioinformatics Sapelo2 Up20.png
pyani 0.2.10 Bioinformatics Sapelo2 Up20.png
pybedtools 0.7.10 Bioinformatics Sapelo2 Up20.png
PyCUDA 2019.1.2 Other Sapelo2 Up20.png
pyDNA 0.1 Bioinformatics Sapelo2 Up20.png
pydub 0.22.1 Other Sapelo2 Up20.png
pyfasta 0.5.2 Bioinformatics Sapelo2 Up20.png
PyMOL 2.3.0a0 Graphics Sapelo2 Up20.png
pyNBS 0.2.0 Bioinformatics Sapelo2 Up20.png
PyPy 6.0.0 (2.7.14) Programming Sapelo2 Up20.png
Pysam 0.10.0, 0.13.0, 0.14.1 Bioinformatics Sapelo2 Up20.png
Python 2.7.12, 2.7.14, 3.5.2, 3.6.4, 3.7.0, 3.7.2, 3.7.4, 3.8.2 Programming Sapelo2 Up20.png
Python 3.7.4, 2.7.16 Programming Teaching Up20.png
PyTorch 0.3.1, 1.0.0, 1.2.0, 1.3.1 Other Sapelo2 Up20.png
pyvcf 0.6.8 Bioinformatics Sapelo2 Up20.png
q2-brocc 2018.6.0.dev0 Bioinformatics Sapelo2 Up20.png
QCTOOL 2.0.6 Bioinformatics Sapelo2 Up20.png
qiaseq-16S 20190306 Bioinformatics Sapelo2 Up20.png
QIIME2 2018.2, 2018.4, 2018.6, 2018.8, 2018.11, 2019.1, 2020.6 Bioinformatics Sapelo2 Up20.png
QIIME 1.9.1 Bioinformatics Sapelo2 Up20.png
QTLcartographer 1.17j Bioinformatics Sapelo2 Up20.png
Qualimap2 2.2.1 Bioinformatics Sapelo2 Up20.png
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QMCPACK 3.6.0 Chemistry Sapelo2 Up20.png
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RaGOO 1.1 Bioinformatics Sapelo2 Up20.png
randfold 2.0.1 Bioinformatics Sapelo2 Up20.png
RATT 20180710 Bioinformatics Sapelo2 Up20.png
RAxML-NG 0.7.0 Bioinformatics Sapelo2 Up20.png
RAxML 8.2.4, 8.2.11 Bioinformatics Sapelo2 Up20.png
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Ray 2.3.1 Bioinformatics Sapelo2 Up20.png
Rcorrector 1.0.2 Bioinformatics Sapelo2 Up20.png
Realphy 1.1.2 Bioinformatics Sapelo2 Up20.png
REAPR 1.0.18 Bioinformatics Sapelo2 Up20.png
RECON 1.08 Bioinformatics Sapelo2 Up20.png
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Redundans 0.14a Bioinformatics Sapelo2 Up20.png
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RepeatMasker 4.0.5, 4.0.7, 4.0.9 Bioinformatics Sapelo2 Up20.png
Repeatmodeler 1.0.11, 2.0.1 Bioinformatics Sapelo2 Up20.png
RepeatScout 1.05 Bioinformatics Sapelo2 Up20.png
REPET 2.5 Bioinformatics Sapelo2 Up20.png
RESCRIPt 20200805 Bioinformatics Sapelo2 Up20.png
RevBayes 1.0.10 Bioinformatics Sapelo2 Up20.png
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rjags 4.6 Other Sapelo2 Up20.png
RMBlast 2.6.0 Bioinformatics Sapelo2 Up20.png
Rmpi 0.6-6 Programming Sapelo2 Up20.png
RNAmmer 1.2 Bioinformatics Sapelo2 Up20.png
RNAz 2.1 Bioinformatics Sapelo2 Up20.png
Roary 3.12.0 Bioinformatics Sapelo2 Up20.png
Rosetta 2017.45.59812, 2019.47.61047 Chemistry Sapelo2 Up20.png
RSEM 1.3.0, 1.3.1 Bioinformatics Sapelo2 Up20.png
RSeQC 3.0.0 Bioinformatics Sapelo2 Up20.png
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runBNG 1.03 Bioinformatics Sapelo2 Up20.png
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SalmonTools 0.1 Bioinformatics Sapelo2 Up20.png
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samblaster 0.1.24 Bioinformatics Sapelo2 Up20.png
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SANN 20190528 Bioinformatics Sapelo2 Up20.png
sbt 1.1.1 Programming Sapelo2 Up20.png
scala 2.12.4 Programming Sapelo2 Up20.png
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SCons 2.5.0 Other Sapelo2 Up20.png
SCOTCH 6.0.4 Other Sapelo2 Up20.png
scram 0.2.2 Bioinformatics Sapelo2 Up20.png
screen_assembly 1.2.7 Bioinformatics Sapelo2 Up20.png
SeaDAS 7.5.3 Graphics Sapelo2 Up20.png
seaview 4.7 Bioinformatics Sapelo2 Up20.png
selscan 1.3.0 Bioinformatics Sapelo2 Up20.png
Seq-Gen 1.3.4 Bioinformatics Sapelo2 Up20.png
SeqKit 0.10.1, 0.10.2 Bioinformatics Sapelo2 Up20.png
seqqs 20140225 Bioinformatics Sapelo2 Up20.png
seqtk 1.2 Bioinformatics Sapelo2 Up20.png
SGA 0.10.15 Bioinformatics Sapelo2 Up20.png
Shannon 20190826 Bioinformatics Sapelo2 Up20.png
shapeit v2.r904 Bioinformatics Sapelo2 Up20.png
Shasta 0.2.0 Bioinformatics Sapelo2 Up20.png
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Sibelia 3.0.7 Bioinformatics Sapelo2 Up20.png
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SignalP 4.1f Bioinformatics Sapelo2 Up20.png
Silix 1.2.9 Bioinformatics Sapelo2 Up20.png
SimLoRD 1.0.2 Bioinformatics Sapelo2 Up20.png
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SOAPdenovo2 r240 Bioinformatics Sapelo2 Up20.png
somaticseq 3.4.1 Bioinformatics Sapelo2 Up20.png
SOP-GPU 20180404 Bioinformatics Sapelo2 Up20.png
SortMeRNA 2.1, 3.0.3 Bioinformatics Sapelo2 Up20.png
SoX 14.4.2 Other Sapelo2 Up20.png
SPAdes 3.11.1, 3.12.0, 3.14.0 Bioinformatics Sapelo2 Up20.png
spams 2.6.1 Other Sapelo2 Up20.png
Spanki 0.5.1 Bioinformatics Sapelo2 Up20.png
Spark 2.2.1 Other Sapelo2 Up20.png
Speciesprimer 2.1.2 Bioinformatics Sapelo2 Up20.png
SpeedSeq 0.1.2 Bioinformatics Sapelo2 Up20.png
Spine 0.3.2 Bioinformatics Sapelo2 Up20.png
SpliceGrapher 0.2.5 Bioinformatics Sapelo2 Up20.png
Splitstree4 4.16.0 Bioinformatics Sapelo2 Up20.png
SPM 12 Other Sapelo2 Up20.png
SRAToolKit 2.8.2-1, 2.9.1 Bioinformatics Sapelo2 Up20.png
sRNAWorkbench 4.5 Bioinformatics Sapelo2 Up20.png
SSAHA2 2.5.5 Bioinformatics Sapelo2 Up20.png
SSPACE 2.1.1 Bioinformatics Sapelo2 Up20.png
Stacks 1.48, 2.2, 2.3, 2.3b, 2.3d, 2.3e Bioinformatics Sapelo2 Up20.png
Stampy 1.0.31 Bioinformatics Sapelo2 Up20.png
STAR-Fusion 1.5.0 Bioinformatics Sapelo2 Up20.png
STAR 2.5.3a, 2.6.0c, 2.6.1c, 2.7.1a Bioinformatics Sapelo2 Up20.png
StrAuto 1.0 Bioinformatics Sapelo2 Up20.png
StringTie 1.3.3, 1.3.4d, 2.0.3, 2.0.6 Bioinformatics Sapelo2 Up20.png
StringTie 2.1.1 Bioinformatics Teaching Up20.png
Structure 2.3.4 Bioinformatics Sapelo2 Up20.png
Subread 1.6.2 Bioinformatics Sapelo2 Up20.png
SUNTANS 20180305 Other Sapelo2 Up20.png
Supernova 2.0.1, 2.1.1 Bioinformatics Sapelo2 Up20.png
SUPPA 2.3 Bioinformatics Sapelo2 Up20.png
SVDetect 0.7 Bioinformatics Sapelo2 Up20.png
svtools 0.5.1 Bioinformatics Sapelo2 Up20.png
SWIG 3.0.12 Bioinformatics Sapelo2 Up20.png
Synima 20181205 Bioinformatics Sapelo2 Up20.png
Tabix 0.2.6 Bioinformatics Sapelo2 Up20.png
TASSEL 5.2.44 Bioinformatics Sapelo2 Up20.png
Tbl2asn 04172018, 03282019, 05012020 Bioinformatics Sapelo2 Up20.png
TCSF_IMRA 1.3 Bioinformatics Sapelo2 Up20.png
TensorFlow-models 20180620 Other Sapelo2 Up20.png
TensorFlow 1.8.0, 1.10.1, 1.12.0, 1.14 Other Sapelo2 Up20.png
Theano 0.9.0, 1.0.2 Other Sapelo2 Up20.png
TigMint 1.1.2 Bioinformatics Sapelo2 Up20.png
TMHMM 2.0c Bioinformatics Sapelo2 Up20.png
tmux 2.9 Other Sapelo2 Up20.png
Tombo 1.5 Bioinformatics Sapelo2 Up20.png
Tophat 2.1.0, 2.1.1 Bioinformatics Sapelo2 Up20.png
torchvision 0.5.0 Other Sapelo2 Up20.png
TPP 5.1.0 Bioinformatics Sapelo2 Up20.png
tqdm 4.43.0, 4.44.1 Other Sapelo2 Up20.png
TransDecoder 2.1.0, 5.3.0, 5.5.0 Bioinformatics Sapelo2 Up20.png
Transposome 0.12.1 Bioinformatics Sapelo2 Up20.png
Transrate 1.0.3 Bioinformatics Sapelo2 Up20.png
Transrate 1.0.3 Bioinformatics Sapelo2 Up20.png
TreeMix 1.13 Bioinformatics Sapelo2 Up20.png
TreeTime 0.6.3 Bioinformatics Sapelo2 Up20.png
TrimAl 1.4.1 Bioinformatics Sapelo2 Up20.png
Trimmomatic 0.36 Bioinformatics Sapelo2 Up20.png
Trim_Galore 0.4.5, 0.6.5 Bioinformatics Sapelo2 Up20.png
Trinity r20140717, 2.5.1, 2.6.6, 2.8.4 Bioinformatics Sapelo2 Up20.png
Trinotate 3.1.1, 3.2.1 Bioinformatics Sapelo2 Up20.png
TRNAscan-SE 2.0.0 Bioinformatics Sapelo2 Up20.png
UCLUST 1.2.22q Bioinformatics Sapelo2 Up20.png
ucsc 359 Bioinformatics Sapelo2 Up20.png
UMI-tools 1.0.1 Bioinformatics Sapelo2 Up20.png
UPP 3.2 Other Sapelo2 Up20.png
USEARCH 10.0.240 Bioinformatics Sapelo2 Up20.png
Unicycler 0.4.7 Bioinformatics Sapelo2 Up20.png
VarScan 2.4.2 Bioinformatics Sapelo2 Up20.png
VCF-kit 0.1.6 Bioinformatics Sapelo2 Up20.png
vcf2diploid 0.2.6a Chemistry Sapelo2 Up20.png
vcf2maf 20200520 Bioinformatics Sapelo2 Up20.png
vcf2phylip 1.5 Bioinformatics Sapelo2 Up20.png
vcflib 20180410 Bioinformatics Sapelo2 Up20.png
VCFtools 0.1.15 Bioinformatics Sapelo2 Up20.png
Velvet 1.2.10 Bioinformatics Sapelo2 Up20.png
VelvetOptimiser 2.2.5, 2.2.6 Bioinformatics Sapelo2 Up20.png
ViennaRNA 2.4.3, 2.4.6 Bioinformatics Sapelo2 Up20.png
ViewBS 0.1.7, 0.1.9 Bioinformatics Sapelo2 Up20.png
Vmatch 2.3.0 Bioinformatics Sapelo2 Up20.png
VSEARCH 2.8.1 Bioinformatics Sapelo2 Up20.png
WGS 8.3rc2 Bioinformatics Sapelo2 Up20.png
WASP 0.3.4 Bioinformatics Sapelo2 Up20.png
WebLogo 3.6.0 Bioinformatics Sapelo2 Up20.png
WEKA 3.8.3 Other Sapelo2 Up20.png
WPS 3.8 Other Sapelo2 Up20.png
WRF-Chem 3.6.1, 3.8.0 Other Sapelo2 Up20.png
WRF-Fire 20170221 Other Sapelo2 Up20.png
WRF 3.6.1, 3.8.0 Other Sapelo2 Up20.png
WU Blast 2.2.6 Bioinformatics Sapelo2 Up20.png
xforms 1.2.4 Graphics Sapelo2 Up20.png
YASRA 2.33 Bioinformatics Sapelo2 Up20.png

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