Software installed on Rocky 8: Difference between revisions
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3-NA/201008-foss-2021b-Python-2.7.18 | |||
ABySS/2.3.5-foss-2021b | ABySS/2.3.5-foss-2021b | ||
ACTC/1.1-GCCcore-11.2.0 | ACTC/1.1-GCCcore-11.2.0 | ||
AMIXTURE/1.3.0 | |||
AGAT/0.9.2-GCC-11.2.0 | AGAT/0.9.2-GCC-11.2.0 | ||
AGAT/1.1.0 | AGAT/1.1.0 | ||
| Line 29: | Line 29: | ||
ATK/2.38.0-GCCcore-11.3.0 | ATK/2.38.0-GCCcore-11.3.0 | ||
AUGUSTUS/3.4.0-foss-2021b | AUGUSTUS/3.4.0-foss-2021b | ||
Amber/22.0-foss-2021b-AmberTools-22.3- | AUGUSTUS/3.5.0-foss-2022a | ||
AlignGraph/2023-03-02-GCC-8.3.0 | |||
AlphaFold/2.3.4-foss-2022a-CUA-11.7.0-ColabFold | |||
Amber/22.0-foss-2021b-AmberTools-22.3-CUA-11.4.1 | |||
Anaconda3/2022.10 | Anaconda3/2022.10 | ||
Archive-Zip/1.68-GCCcore-11.2.0 | Archive-Zip/1.68-GCCcore-11.2.0 | ||
Armadillo/11.4.3-foss-2021b | Armadillo/11.4.3-foss-2021b | ||
Armadillo/11.4.3-foss-2022a | |||
Arrow/8.0.0-foss-2021b | Arrow/8.0.0-foss-2021b | ||
Autoconf/2.69-GCCcore-8.3.0 | Autoconf/2.69-GCCcore-8.3.0 | ||
| Line 51: | Line 55: | ||
BBMap/38.98-GCC-11.2.0 | BBMap/38.98-GCC-11.2.0 | ||
BCFtools/1.14-GCC-11.2.0 | BCFtools/1.14-GCC-11.2.0 | ||
BCFtools/1.15.1-GCC-11.3.0 | |||
BEOPS/2.4.41-foss-2021b | |||
BETools/2.30.0-GCC-11.2.0 | |||
BLAST+/2.2.31 | BLAST+/2.2.31 | ||
BLAST+/2.12.0-gompi-2021b | BLAST+/2.12.0-gompi-2021b | ||
| Line 67: | Line 72: | ||
BWA/0.7.17-GCCcore-11.2.0 | BWA/0.7.17-GCCcore-11.2.0 | ||
BamTools/2.5.2-GCC-11.2.0 | BamTools/2.5.2-GCC-11.2.0 | ||
BamTools/2.5.2-GCC-11.3.0 | |||
BamUtil/1.0.15-foss-2021b | BamUtil/1.0.15-foss-2021b | ||
Bandage/0.9.0-GCCcore-11.2.0 | Bandage/0.9.0-GCCcore-11.2.0 | ||
| Line 74: | Line 80: | ||
Bazel/5.1.1-GCCcore-11.3.0 | Bazel/5.1.1-GCCcore-11.3.0 | ||
Beagle/5.4.22Jul22.46e-Java-11 | Beagle/5.4.22Jul22.46e-Java-11 | ||
Beast/2.7.1-foss-2021b- | Beast/2.7.1-foss-2021b-CUA-11.4.1 | ||
BigFT/1.9.1-foss-2021b | |||
Bio- | Bio-B-HTS/3.01-GCC-11.2.0 | ||
BioPerl/1.7.8-GCCcore-11.2.0 | BioPerl/1.7.8-GCCcore-11.2.0 | ||
BioPerl/1.7.8-GCCcore-11.3.0 | |||
Biopython/1.79-foss-2021b | Biopython/1.79-foss-2021b | ||
Biopython/1.79-foss-2022a | Biopython/1.79-foss-2022a | ||
| Line 90: | Line 97: | ||
Bison/3.8.2 | Bison/3.8.2 | ||
Blosc/1.21.3-GCCcore-11.2.0 | Blosc/1.21.3-GCCcore-11.2.0 | ||
Boost.MPI/1.79.0-gompi-2022a | |||
Boost.Python/1.77.0-GCC-11.2.0 | Boost.Python/1.77.0-GCC-11.2.0 | ||
Boost/1.75.0-GCC-11.2.0 | Boost/1.75.0-GCC-11.2.0 | ||
Boost/1.77.0-GCC-11.2.0 | Boost/1.77.0-GCC-11.2.0 | ||
Boost/1.79.0-GCC-11.3.0 | Boost/1.79.0-GCC-11.3.0 | ||
Bottleneck/1.3.7-foss-2022a | |||
Bowtie/1.3.1-GCC-11.2.0 | Bowtie/1.3.1-GCC-11.2.0 | ||
Bowtie/1.3.1-GCC-11.3.0 | Bowtie/1.3.1-GCC-11.3.0 | ||
Bowtie2/2.4.1-GCC-8.3.0 | |||
Bowtie2/2.4.4-GCC-11.2.0 | Bowtie2/2.4.4-GCC-11.2.0 | ||
Bowtie2/2.4.5-GCC-11.2.0 | Bowtie2/2.4.5-GCC-11.2.0 | ||
| Line 102: | Line 112: | ||
Brotli/1.0.9-GCCcore-11.2.0 | Brotli/1.0.9-GCCcore-11.2.0 | ||
Brotli/1.0.9-GCCcore-11.3.0 | Brotli/1.0.9-GCCcore-11.3.0 | ||
C-HIT/4.8.1-GCC-11.2.0 | |||
C-HIT/4.8.1-GCC-11.3.0 | |||
CFITSIO/3.49-GCCcore-11.2.0 | CFITSIO/3.49-GCCcore-11.2.0 | ||
CGAL/4.14.3-gompi-2021b | CGAL/4.14.3-gompi-2021b | ||
| Line 112: | Line 122: | ||
CMake/3.23.1-GCCcore-11.3.0 | CMake/3.23.1-GCCcore-11.3.0 | ||
CMake/3.24.3-GCCcore-11.3.0 | CMake/3.24.3-GCCcore-11.3.0 | ||
CUA/11.3.1 | |||
CUA/11.4.1 | |||
CUA/11.7.0 | |||
CUA/12.0.0 | |||
CapnProto/0.9.1-GCCcore-11.2.0 | CapnProto/0.9.1-GCCcore-11.2.0 | ||
CellRanger/7.0.0 | CellRanger/7.0.0 | ||
Centrifuge/1.0.4-gompi-2021b | Centrifuge/1.0.4-gompi-2021b | ||
Cereal/1.3.0 | Cereal/1.3.0 | ||
CheMPS2/1.8.11-foss-2021b | |||
Check/0.15.2-GCCcore-11.2.0 | Check/0.15.2-GCCcore-11.2.0 | ||
CheckM/1.1.3-foss-2021b | CheckM/1.1.3-foss-2021b | ||
| Line 128: | Line 139: | ||
ClustalW2/2.1-GCC-11.2.0 | ClustalW2/2.1-GCC-11.2.0 | ||
Consed/29.0-foss-2021b | Consed/29.0-foss-2021b | ||
Consed/29.0-foss-2022a | |||
CoordgenLibs/3.0.1-gompi-2021b | CoordgenLibs/3.0.1-gompi-2021b | ||
CppUnit/1.15.1-GCCcore-11.2.0 | CppUnit/1.15.1-GCCcore-11.2.0 | ||
Cufflinks/20190706-GCC-11.2.0 | Cufflinks/20190706-GCC-11.2.0 | ||
Cython/0.27.3-GCCcore-11.3.0-Python-2.7.18 | |||
Cytoscape/3.9.1-Java-11 | Cytoscape/3.9.1-Java-11 | ||
B/18.1.32-GCCcore-8.3.0 | |||
B/18.1.40-GCCcore-10.2.0 | |||
B/18.1.40-GCCcore-11.2.0 | |||
B/18.1.40-GCCcore-11.3.0 | |||
B/18.1.40-GCCcore-12.2.0 | |||
B-mysql/4.050-GCC-11.2.0 | |||
B_File/1.857-GCCcore-11.2.0 | |||
B_File/1.858-GCCcore-11.3.0 | |||
Bus/1.13.18-GCCcore-11.2.0 | |||
Bus/1.14.0-GCCcore-11.3.0 | |||
IAMON/2.0.13-GCC-11.2.0 | |||
IAMON/2.0.15-GCC-11.2.0 | |||
IAMON/2.1.0-GCC-11.3.0 | |||
ataWarrior/5.5.0 | |||
endroPy/4.5.2-GCCcore-11.2.0 | |||
eve-Size/0.83-GCCcore-11.2.0-Perl-5.34.0 | |||
ockQ/1.0-foss-2022a | |||
oxygen/1.9.1-GCCcore-11.2.0 | |||
oxygen/1.9.4-GCCcore-11.3.0 | |||
ELPA/2021.11.001-foss-2021b | ELPA/2021.11.001-foss-2021b | ||
EMBOSS/6.6.0-foss-2021b | EMBOSS/6.6.0-foss-2021b | ||
| Line 159: | Line 173: | ||
EnTAP/0.10.8-beta-foss-2021b | EnTAP/0.10.8-beta-foss-2021b | ||
Exonerate/2.4.0-GCC-11.2.0 | Exonerate/2.4.0-GCC-11.2.0 | ||
Exonerate/2.4.0-GCC-11.3.0 | |||
FASTX-Toolkit/0.0.14-GCC-11.2.0 | FASTX-Toolkit/0.0.14-GCC-11.2.0 | ||
FFTW.MPI/3.3.10-gompi-2022a | FFTW.MPI/3.3.10-gompi-2022a | ||
| Line 198: | Line 213: | ||
GCCcore/11.3.0 | GCCcore/11.3.0 | ||
GCCcore/12.2.0 | GCCcore/12.2.0 | ||
G/2.75-GCCcore-11.2.0 | |||
GAL/3.3.2-foss-2021b | |||
GAL/3.5.0-foss-2022a | |||
GRCopy/2.3-GCCcore-11.2.0 | |||
GRCopy/2.3-GCCcore-11.3.0 | |||
GEM/1.5.1-foss-2022a | |||
GEOS/3.9.1-GCC-11.2.0 | GEOS/3.9.1-GCC-11.2.0 | ||
GEOS/3.10.3-GCC-11.3.0 | GEOS/3.10.3-GCC-11.3.0 | ||
| Line 217: | Line 233: | ||
GObject-Introspection/1.68.0-GCCcore-11.2.0 | GObject-Introspection/1.68.0-GCCcore-11.2.0 | ||
GObject-Introspection/1.72.0-GCCcore-11.3.0 | GObject-Introspection/1.72.0-GCCcore-11.3.0 | ||
GROMACS/2021.5-foss-2021b- | GROMACS/2021.5-foss-2021b-CUA-11.4.1-PLUME-2.8.0 | ||
GSL/2.7-GCC-11.2.0 | GSL/2.7-GCC-11.2.0 | ||
GSL/2.7-GCC-11.3.0 | GSL/2.7-GCC-11.3.0 | ||
| Line 229: | Line 245: | ||
Gdk-Pixbuf/2.42.8-GCCcore-11.3.0 | Gdk-Pixbuf/2.42.8-GCCcore-11.3.0 | ||
GeneMark-ET/4.71-GCCcore-11.2.0 | GeneMark-ET/4.71-GCCcore-11.2.0 | ||
GeneMark-ET/4.71-GCCcore-11.3.0 | |||
GeneMarkS-T/5.1-GCCcore-11.2.0 | GeneMarkS-T/5.1-GCCcore-11.2.0 | ||
Genome/05012020-foss-2021b | Genome/05012020-foss-2021b | ||
Genome/05012020-foss-2022a | |||
GenomeThreader/1.7.3-Linux_x86_64-64bit | GenomeThreader/1.7.3-Linux_x86_64-64bit | ||
GenomeTools/1.6.2-GCC-11.2.0 | GenomeTools/1.6.2-GCC-11.2.0 | ||
| Line 242: | Line 260: | ||
Grace/5.1.25-foss-2021b | Grace/5.1.25-foss-2021b | ||
Graphviz/2.50.0-GCCcore-11.2.0 | Graphviz/2.50.0-GCCcore-11.2.0 | ||
Guile/3.0.7-GCCcore-11.2.0 | Guile/1.8.8-GCCcore-8.3.0 | ||
Guile/3.0.7-GCCcore-11.2.0 | |||
HF/4.2.15-GCCcore-11.2.0 | |||
HF/4.2.15-GCCcore-11.3.0 | |||
HF5/1.10.8-gompi-2021b | |||
HF5/1.10.8-gompi-2022a | |||
HF5/1.12.1-gompi-2021b | |||
HF5/1.12.2-gompi-2022a | |||
HEC-RAS/6.10 | HEC-RAS/6.10 | ||
HH-suite/3.3.0-gompi-2021b | HH-suite/3.3.0-gompi-2021b | ||
HH-suite/3.3.0-gompi-2022a | |||
HISAT2/2.2.1-gompi-2021b | HISAT2/2.2.1-gompi-2021b | ||
HISAT2/2.2.1-gompi-2022a | HISAT2/2.2.1-gompi-2022a | ||
| Line 262: | Line 282: | ||
HarfBuzz/2.8.2-GCCcore-11.2.0 | HarfBuzz/2.8.2-GCCcore-11.2.0 | ||
HarfBuzz/4.2.1-GCCcore-11.3.0 | HarfBuzz/4.2.1-GCCcore-11.3.0 | ||
Homer/4.11-foss-2021b | |||
HyPhy/2.5.33-gompi-2021b | HyPhy/2.5.33-gompi-2021b | ||
HybPiper/2.1.6-conda | |||
ICU/69.1-GCCcore-11.2.0 | ICU/69.1-GCCcore-11.2.0 | ||
ICU/71.1-GCCcore-11.3.0 | ICU/71.1-GCCcore-11.3.0 | ||
IBA-U/1.1.3-GCC-11.2.0 | |||
IGV/2.16.1-Java-11 | IGV/2.16.1-Java-11 | ||
IPython/7.26.0-GCCcore-11.2.0 | IPython/7.26.0-GCCcore-11.2.0 | ||
| Line 276: | Line 298: | ||
InterProScan/5.62-94.0-foss-2021b | InterProScan/5.62-94.0-foss-2021b | ||
JAGS/4.3.0-foss-2021b | JAGS/4.3.0-foss-2021b | ||
JUnit/4.12-Java-1.8.0_241 | |||
JasPer/2.0.33-GCCcore-11.2.0 | JasPer/2.0.33-GCCcore-11.2.0 | ||
JasPer/2.0.33-GCCcore-11.3.0 | JasPer/2.0.33-GCCcore-11.3.0 | ||
Java/1.7.0_80 | Java/1.7.0_80 | ||
Java/1.8.0_241 | Java/1.8.0_241 | ||
Java/11.0.16 | Java/11.0.16 | ||
Java/13.0.2 | Java/13.0.2 | ||
Java/15.0.1 | Java/15.0.1 | ||
Java/17.0.6 | Java/17.0.6 | ||
Jellyfish/2.3.0-GCC-11.2.0 | Jellyfish/2.3.0-GCC-11.2.0 | ||
Jellyfish/2.3.0-GCC-11.3.0 | Jellyfish/2.3.0-GCC-11.3.0 | ||
| Line 292: | Line 315: | ||
Julia/1.8.2-linux-x86_64 | Julia/1.8.2-linux-x86_64 | ||
Kalign/3.3.2-GCCcore-11.2.0 | Kalign/3.3.2-GCCcore-11.2.0 | ||
Kalign/3.3.5-GCCcore-11.3.0 | |||
Kent_tools/422-GCC-11.2.0 | Kent_tools/422-GCC-11.2.0 | ||
KerasTuner/1.3.5-foss-2022a | |||
KronaTools/2.8.1-GCCcore-11.2.0 | KronaTools/2.8.1-GCCcore-11.2.0 | ||
LAME/3.100-GCCcore-11.2.0 | LAME/3.100-GCCcore-11.2.0 | ||
| Line 301: | Line 326: | ||
LLVM/12.0.1-GCCcore-11.2.0 | LLVM/12.0.1-GCCcore-11.2.0 | ||
LLVM/14.0.3-GCCcore-11.3.0 | LLVM/14.0.3-GCCcore-11.3.0 | ||
LMB/0.9.29-GCCcore-11.2.0 | |||
LMB/0.9.29-GCCcore-11.3.0 | |||
LS2/2.3-GCCcore-11.2.0 | |||
LTR_retriever/2.9.0-foss-2021b-RepeatMasker-4.1.4 | LTR_retriever/2.9.0-foss-2021b-RepeatMasker-4.1.4 | ||
LTR_retriever/2.9.0-foss-2021b | LTR_retriever/2.9.0-foss-2021b | ||
| Line 310: | Line 335: | ||
LibTIFF/4.3.0-GCCcore-11.2.0 | LibTIFF/4.3.0-GCCcore-11.2.0 | ||
LibTIFF/4.3.0-GCCcore-11.3.0 | LibTIFF/4.3.0-GCCcore-11.3.0 | ||
LightGBM/3.3.5-foss-2021b- | LightGBM/3.3.5-foss-2021b-CUA-11.4.1 | ||
LightGBM/3.3.5-foss-2021b | LightGBM/3.3.5-foss-2021b | ||
LittleCMS/2.12-GCCcore-11.2.0 | LittleCMS/2.12-GCCcore-11.2.0 | ||
| Line 326: | Line 351: | ||
MAFFT/7.490-GCC-11.2.0-with-extensions | MAFFT/7.490-GCC-11.2.0-with-extensions | ||
MAFFT/7.490-gompi-2021b-with-extensions | MAFFT/7.490-gompi-2021b-with-extensions | ||
MAKER/3.01.04-foss-2022a | |||
MCL/14.137-GCCcore-11.2.0 | MCL/14.137-GCCcore-11.2.0 | ||
MEGAN/6.24.23-Java-17 | MEGAN/6.24.23-Java-17 | ||
| Line 331: | Line 357: | ||
MEME/5.5.0-gompi-2021b | MEME/5.5.0-gompi-2021b | ||
METIS/5.1.0-GCCcore-11.2.0 | METIS/5.1.0-GCCcore-11.2.0 | ||
METIS/5.1.0-GCCcore-11.3.0 | |||
MMseqs2/13-45111-gompi-2021b | MMseqs2/13-45111-gompi-2021b | ||
MMseqs2/14-7e284-gompi-2021b | MMseqs2/14-7e284-gompi-2021b | ||
MMseqs2/14-7e284-gompi-2022a | MMseqs2/14-7e284-gompi-2022a | ||
MPACK/3.0.0-foss-2021b | |||
MPFR/4.1.0-GCCcore-11.2.0 | MPFR/4.1.0-GCCcore-11.2.0 | ||
MPFR/4.1.0-GCCcore-11.3.0 | MPFR/4.1.0-GCCcore-11.3.0 | ||
| Line 342: | Line 370: | ||
Mako/1.1.4-GCCcore-11.2.0 | Mako/1.1.4-GCCcore-11.2.0 | ||
Mako/1.2.0-GCCcore-11.3.0 | Mako/1.2.0-GCCcore-11.3.0 | ||
MariaB-connector-c/3.2.2-GCCcore-11.2.0 | |||
MariaB/10.6.4-GCC-11.2.0 | |||
MariaB/10.9.3-GCC-11.3.0 | |||
Mash/2.3-GCC-11.2.0 | Mash/2.3-GCC-11.2.0 | ||
Medusa/1.6-foss-2021b-Python-3.9.6-Java-1.8.0_241 | |||
Mesa/21.1.7-GCCcore-11.2.0 | Mesa/21.1.7-GCCcore-11.2.0 | ||
Mesa/22.0.3-GCCcore-11.3.0 | Mesa/22.0.3-GCCcore-11.3.0 | ||
| Line 351: | Line 381: | ||
Meson/0.62.1-GCCcore-11.3.0 | Meson/0.62.1-GCCcore-11.3.0 | ||
MetaEuk/6-GCC-11.2.0 | MetaEuk/6-GCC-11.2.0 | ||
MinCE/0.4.2-GCCcore-8.3.0-Java-11 | |||
Miniconda3/4.12.0 | Miniconda3/4.12.0 | ||
Miniconda3/22.11.1-1 | |||
Mirage/2.0.0-GCCcore-11.2.0 | Mirage/2.0.0-GCCcore-11.2.0 | ||
MuTect/1.1.7-Java-1.7.0_80 | MuTect/1.1.7-Java-1.7.0_80 | ||
| Line 358: | Line 390: | ||
NASM/2.15.05-GCCcore-11.2.0 | NASM/2.15.05-GCCcore-11.2.0 | ||
NASM/2.15.05-GCCcore-11.3.0 | NASM/2.15.05-GCCcore-11.3.0 | ||
NCCL/2.10.3-GCCcore-11.2.0- | NCCL/2.10.3-GCCcore-11.2.0-CUA-11.4.1 | ||
NCCL/2.12.12-GCCcore-11.3.0-CUA-11.7.0 | |||
NGS/2.10.9-GCCcore-11.2.0 | NGS/2.10.9-GCCcore-11.2.0 | ||
NGS/2.11.2-GCCcore-11.2.0 | NGS/2.11.2-GCCcore-11.2.0 | ||
| Line 365: | Line 398: | ||
NSPR/4.32-GCCcore-11.2.0 | NSPR/4.32-GCCcore-11.2.0 | ||
NSS/3.69-GCCcore-11.2.0 | NSS/3.69-GCCcore-11.2.0 | ||
NVHPC/22.11- | NVHPC/22.11-CUA-11.7.0 | ||
NVHPC/23.1- | NVHPC/23.1-CUA-12.0.0 | ||
Nextflow/22.10.6 | Nextflow/22.10.6 | ||
Ninja/1.10.2-GCCcore-11.2.0 | Ninja/1.10.2-GCCcore-11.2.0 | ||
| Line 379: | Line 412: | ||
OpenJPEG/2.4.0-GCCcore-11.2.0 | OpenJPEG/2.4.0-GCCcore-11.2.0 | ||
OpenJPEG/2.5.0-GCCcore-11.3.0 | OpenJPEG/2.5.0-GCCcore-11.3.0 | ||
OpenMM/7.5.1-foss-2021b- | OpenMM/7.5.1-foss-2021b-eepMind-patch | ||
OpenMM/8.0.0-foss-2022a-CUA-11.7.0 | |||
OpenMPI/4.1.2-GCC-11.2.0-pmi2 | OpenMPI/4.1.2-GCC-11.2.0-pmi2 | ||
OpenMPI/4.1.2-GCC-11.2.0 | OpenMPI/4.1.2-GCC-11.2.0 | ||
| Line 393: | Line 427: | ||
PCRE2/10.40-GCCcore-11.3.0 | PCRE2/10.40-GCCcore-11.3.0 | ||
PLINK/2.00a4-GCC-11.2.0 | PLINK/2.00a4-GCC-11.2.0 | ||
PLUME/2.7.3-foss-2021b | |||
PLUME/2.8.0-foss-2021b | |||
PMIx/3.1.5-GCCcore-10.2.0 | PMIx/3.1.5-GCCcore-10.2.0 | ||
PMIx/4.1.0-GCCcore-11.2.0 | PMIx/4.1.0-GCCcore-11.2.0 | ||
| Line 401: | Line 435: | ||
PROJ/8.1.0-GCCcore-11.2.0 | PROJ/8.1.0-GCCcore-11.2.0 | ||
PROJ/9.0.0-GCCcore-11.3.0 | PROJ/9.0.0-GCCcore-11.3.0 | ||
PSI4/1.7-foss-2021b | |||
PTarPmiR/0.1-foss-2021b-Python-3.9.6 | PTarPmiR/0.1-foss-2021b-Python-3.9.6 | ||
Pango/1.48.8-GCCcore-11.2.0 | Pango/1.48.8-GCCcore-11.2.0 | ||
| Line 415: | Line 450: | ||
Phobius/1.01-GCCcore-11.2.0-Perl-5.34.0 | Phobius/1.01-GCCcore-11.2.0-Perl-5.34.0 | ||
Phrap/0.990329-foss-2021b | Phrap/0.990329-foss-2021b | ||
Phrap/0.990329-foss-2022a | |||
Phred/0.071220.c-foss-2021b | Phred/0.071220.c-foss-2021b | ||
Phred/0.071220.c-foss-2022a | |||
Pillow-SIM/8.3.2-GCCcore-11.2.0 | |||
Pillow/8.3.2-GCCcore-11.2.0 | Pillow/8.3.2-GCCcore-11.2.0 | ||
Pillow/9.1.1-GCCcore-11.3.0 | |||
Pilon/1.23-Java-11 | Pilon/1.23-Java-11 | ||
PnetCF/1.12.3-gompi-2021b | |||
PyBioLib/1.1.988-GCCcore-11.3.0 | PyBioLib/1.1.988-GCCcore-11.3.0 | ||
PyQt5/5.15.4-GCCcore-11.2.0 | PyQt5/5.15.4-GCCcore-11.2.0 | ||
PyRosetta/4.release-339-GCCcore-11.2.0-Python-3.9.6 | PyRosetta/4.release-339-GCCcore-11.2.0-Python-3.9.6 | ||
PyTorch/1.12.1-foss-2021b- | PyTorch-Lightning/1.5.9-foss-2021b-CUA-11.4.1 | ||
PyTorch/1.12.1-foss-2021b-CUA-11.4.1 | |||
PyYAML/5.4.1-GCCcore-11.2.0 | PyYAML/5.4.1-GCCcore-11.2.0 | ||
PyYAML/6.0-GCCcore-11.2.0 | PyYAML/6.0-GCCcore-11.2.0 | ||
| Line 429: | Line 469: | ||
Python/2.7.18-GCCcore-11.2.0-bare | Python/2.7.18-GCCcore-11.2.0-bare | ||
Python/2.7.18-GCCcore-11.2.0 | Python/2.7.18-GCCcore-11.2.0 | ||
Python/2.7.18-GCCcore-11.3.0 | |||
Python/3.7.4-GCCcore-8.3.0 | Python/3.7.4-GCCcore-8.3.0 | ||
Python/3.9.6-GCCcore-11.2.0-bare | Python/3.9.6-GCCcore-11.2.0-bare | ||
| Line 434: | Line 475: | ||
Python/3.10.4-GCCcore-11.3.0-bare | Python/3.10.4-GCCcore-11.3.0-bare | ||
Python/3.10.4-GCCcore-11.3.0 | Python/3.10.4-GCCcore-11.3.0 | ||
QIIME2/2023.2 | |||
QUAST/5.0.2-foss-2021b | QUAST/5.0.2-foss-2021b | ||
Qhull/2020.2-GCCcore-11.2.0 | Qhull/2020.2-GCCcore-11.2.0 | ||
Qhull/2020.2-GCCcore-11.3.0 | |||
Qt5/5.15.2-GCCcore-11.2.0 | Qt5/5.15.2-GCCcore-11.2.0 | ||
QuantumESPRESSO/7.1-foss-2021b | QuantumESPRESSO/7.1-foss-2021b | ||
| Line 441: | Line 484: | ||
R/4.1.2-foss-2021b | R/4.1.2-foss-2021b | ||
R/4.2.1-foss-2021b | R/4.2.1-foss-2021b | ||
R/4.2.1-foss-2022a | R/4.2.1-foss-2022a | ||
R/4.3.1-foss-2022a | |||
RAxML/8.2.12-gompi-2021b-hybrid-avx2 | RAxML/8.2.12-gompi-2021b-hybrid-avx2 | ||
RKit/2022.03.5-foss-2021b | |||
RE2/2022-02-01-GCCcore-11.2.0 | RE2/2022-02-01-GCCcore-11.2.0 | ||
RE2/2022-06-01-GCCcore-11.3.0 | |||
RECON/1.08-GCC-11.2.0 | RECON/1.08-GCC-11.2.0 | ||
RMBlast/2.11.0-gompi-2021b | RMBlast/2.11.0-gompi-2021b | ||
RMBlast/2.13.0-gompi-2021b | RMBlast/2.13.0-gompi-2021b | ||
RMBlast/2.13.0-gompi-2022a | |||
RSEM/1.3.3-foss-2021b | RSEM/1.3.3-foss-2021b | ||
RSEM/1.3.3-foss-2022a | RSEM/1.3.3-foss-2022a | ||
Racon/1.5.0-GCCcore-11.2.0 | Racon/1.5.0-GCCcore-11.2.0 | ||
RapidJSON/1.1.0-GCCcore-11.2.0 | RapidJSON/1.1.0-GCCcore-11.2.0 | ||
RapidJSON/1.1.0-GCCcore-11.3.0 | |||
RepeatMasker/4.1.2-p1-foss-2021b | RepeatMasker/4.1.2-p1-foss-2021b | ||
RepeatMasker/4.1.4-foss-2021b | RepeatMasker/4.1.4-foss-2021b | ||
RepeatMasker/4.1.4-foss-2022a | |||
RepeatModeler/2.0.2a-foss-2021b | RepeatModeler/2.0.2a-foss-2021b | ||
RepeatModeler/2.0.3-foss-2021b | RepeatModeler/2.0.3-foss-2021b | ||
| Line 462: | Line 510: | ||
Ruby/3.0.5-GCCcore-11.2.0 | Ruby/3.0.5-GCCcore-11.2.0 | ||
Rust/1.54.0-GCCcore-11.2.0 | Rust/1.54.0-GCCcore-11.2.0 | ||
Rust/1.60.0-GCCcore-11.3.0 | Rust/1.60.0-GCCcore-11.3.0 | ||
Rust/1.70.0-GCCcore-11.3.0 | |||
SAMtools/0.1.20-GCC-11.2.0 | SAMtools/0.1.20-GCC-11.2.0 | ||
SAMtools/1.6-GCC-11.2.0 | SAMtools/1.6-GCC-11.2.0 | ||
| Line 472: | Line 521: | ||
SMRT-Link/12.0.0.177059-cli-tools-only | SMRT-Link/12.0.0.177059-cli-tools-only | ||
SNAP-HMM/20190603-GCC-11.2.0 | SNAP-HMM/20190603-GCC-11.2.0 | ||
SNAP-HMM/20221022-GCC-11.3.0 | |||
SNAP/2.0.1-GCC-11.2.0 | SNAP/2.0.1-GCC-11.2.0 | ||
SNPGenie/1.0-foss-2021b-Perl-5.34.0 | |||
SPAdes/3.15.3-GCC-11.2.0 | SPAdes/3.15.3-GCC-11.2.0 | ||
SPAdes/3.15.5-GCC-11.2.0-kmer300 | SPAdes/3.15.5-GCC-11.2.0-kmer300 | ||
| Line 487: | Line 538: | ||
STAR/2.7.10b-GCC-11.3.0 | STAR/2.7.10b-GCC-11.3.0 | ||
SWIG/4.0.2-GCCcore-11.2.0 | SWIG/4.0.2-GCCcore-11.2.0 | ||
SWIG/4.0.2-GCCcore-11.3.0 | |||
Salmon/0.8.2 | Salmon/0.8.2 | ||
Salmon/1.9.0-GCC-11.2.0 | Salmon/1.9.0-GCC-11.2.0 | ||
| Line 496: | Line 548: | ||
SciPy-bundle/2021.10-foss-2021b-Python-2.7.18 | SciPy-bundle/2021.10-foss-2021b-Python-2.7.18 | ||
SciPy-bundle/2021.10-foss-2021b | SciPy-bundle/2021.10-foss-2021b | ||
SciPy-bundle/2021.10-foss-2022a-Python-2.7.18 | |||
SciPy-bundle/2022.05-foss-2021b | SciPy-bundle/2022.05-foss-2021b | ||
SciPy-bundle/2022.05-foss-2022a | SciPy-bundle/2022.05-foss-2022a | ||
| Line 513: | Line 566: | ||
Subversion/1.14.1-GCCcore-11.2.0 | Subversion/1.14.1-GCCcore-11.2.0 | ||
SuiteSparse/5.10.1-foss-2021b-METIS-5.1.0 | SuiteSparse/5.10.1-foss-2021b-METIS-5.1.0 | ||
SuiteSparse/5.13.0-foss-2022a-METIS-5.1.0 | |||
Szip/2.1.1-GCCcore-11.2.0 | Szip/2.1.1-GCCcore-11.2.0 | ||
Szip/2.1.1-GCCcore-11.3.0 | Szip/2.1.1-GCCcore-11.3.0 | ||
TASSEL/5.2.44-Java-1.8.0_241 | |||
TMHMM/2.0c-GCCcore-11.2.0-Perl-5.34.0 | TMHMM/2.0c-GCCcore-11.2.0-Perl-5.34.0 | ||
TRF/4.09.1-GCCcore-11.2.0 | TRF/4.09.1-GCCcore-11.2.0 | ||
TRF/4.09.1-GCCcore-11.3.0 | |||
TWL-NINJA/0.97-cluster_only-GCC-11.2.0 | TWL-NINJA/0.97-cluster_only-GCC-11.2.0 | ||
TWL-NINJA/0.98-cluster_only-GCC-11.2.0 | TWL-NINJA/0.98-cluster_only-GCC-11.2.0 | ||
| Line 522: | Line 578: | ||
Tcl/8.6.11-GCCcore-11.2.0 | Tcl/8.6.11-GCCcore-11.2.0 | ||
Tcl/8.6.12-GCCcore-11.3.0 | Tcl/8.6.12-GCCcore-11.3.0 | ||
TensorFlow/2.7.1-foss-2021b- | TensorFlow/2.7.1-foss-2021b-CUA-11.4.1 | ||
TensorFlow/2.11.0-foss-2022a-CUA-11.7.0 | |||
TensorFlow/2.11.0-foss-2022a | TensorFlow/2.11.0-foss-2022a | ||
Theano/1.1.2-foss-2021b-PyMC | Theano/1.1.2-foss-2021b-PyMC | ||
| Line 528: | Line 585: | ||
Tk/8.6.12-GCCcore-11.3.0 | Tk/8.6.12-GCCcore-11.3.0 | ||
Tkinter/2.7.18-GCCcore-11.2.0 | Tkinter/2.7.18-GCCcore-11.2.0 | ||
Tkinter/3.9.6-GCCcore-11.2.0 | Tkinter/2.7.18-GCCcore-11.3.0 | ||
Tkinter/3.9.6-GCCcore-11.2.0 | |||
Tkinter/3.10.4-GCCcore-11.3.0 | |||
Transecoder/5.5.0-GCC-11.3.0 | |||
Transecoder/5.7.0-GCC-11.3.0 | |||
Transrate/1.0.3 | Transrate/1.0.3 | ||
TreeMix/1.13-GCC-11.2.0 | TreeMix/1.13-GCC-11.2.0 | ||
| Line 541: | Line 600: | ||
UCC/1.1.0-GCCcore-12.2.0 | UCC/1.1.0-GCCcore-12.2.0 | ||
UCLUST/1.2.22q-i86linux64 | UCLUST/1.2.22q-i86linux64 | ||
UCX- | UCX-CUA/1.11.2-GCCcore-11.2.0-CUA-11.4.1 | ||
UCX- | UCX-CUA/1.12.1-GCCcore-11.3.0-CUA-11.7.0 | ||
UCX/1.9.0-GCCcore-10.2.0 | UCX/1.9.0-GCCcore-10.2.0 | ||
UCX/1.11.2-GCCcore-11.2.0 | UCX/1.11.2-GCCcore-11.2.0 | ||
UCX/1.12.1-GCCcore-11.3.0 | UCX/1.12.1-GCCcore-11.3.0 | ||
UCX/1.13.1-GCCcore-12.2.0 | UCX/1.13.1-GCCcore-12.2.0 | ||
UUNITS/2.2.28-GCCcore-11.2.0 | |||
UUNITS/2.2.28-GCCcore-11.3.0 | |||
UMI-tools/1.1.2-foss-2021b-Python-3.9.6 | UMI-tools/1.1.2-foss-2021b-Python-3.9.6 | ||
USEARCH/11.0.667-i86linux32 | USEARCH/11.0.667-i86linux32 | ||
| Line 569: | Line 628: | ||
WRF/4.4.2-foss-2021b-dmpar | WRF/4.4.2-foss-2021b-dmpar | ||
WU-Blast/2.2.6-GCC-11.2.0 | WU-Blast/2.2.6-GCC-11.2.0 | ||
WU-Blast/2.2.6-GCC-11.3.0 | |||
X11/20210802-GCCcore-11.2.0 | X11/20210802-GCCcore-11.2.0 | ||
X11/20220504-GCCcore-11.3.0 | X11/20220504-GCCcore-11.3.0 | ||
XML-Compile/1.63-GCCcore-11.2.0 | XML-Compile/1.63-GCCcore-11.2.0 | ||
XML-LibXML/2.0207-GCCcore-11.2.0 | XML-LibXML/2.0207-GCCcore-11.2.0 | ||
XML-LibXML/2.0207-GCCcore-11.3.0 | |||
XZ/5.2.4-GCCcore-8.3.0 | XZ/5.2.4-GCCcore-8.3.0 | ||
XZ/5.2.5-GCCcore-10.2.0 | XZ/5.2.5-GCCcore-10.2.0 | ||
| Line 588: | Line 649: | ||
angsd/0.940-GCC-11.2.0 | angsd/0.940-GCC-11.2.0 | ||
annovar/20200607-GCCcore-11.2.0-Perl-5.34.0 | annovar/20200607-GCCcore-11.2.0-Perl-5.34.0 | ||
ant/1.10.1-Java-1.8.0_241 | |||
ant/1.10.11-Java-11 | ant/1.10.11-Java-11 | ||
ant/1.10.12-Java-11 | ant/1.10.12-Java-11 | ||
| Line 594: | Line 656: | ||
aria2/1.36.0-GCCcore-11.2.0 | aria2/1.36.0-GCCcore-11.2.0 | ||
arpack-ng/3.8.0-foss-2021b | arpack-ng/3.8.0-foss-2021b | ||
arpack-ng/3.8.0-foss-2022a | |||
at-spi2-atk/2.38.0-GCCcore-11.2.0 | at-spi2-atk/2.38.0-GCCcore-11.2.0 | ||
at-spi2-atk/2.38.0-GCCcore-11.3.0 | at-spi2-atk/2.38.0-GCCcore-11.3.0 | ||
| Line 603: | Line 666: | ||
bcbio-gff/0.7.0-foss-2021b | bcbio-gff/0.7.0-foss-2021b | ||
bcl2fastq2/2.20.0-GCC-11.2.0 | bcl2fastq2/2.20.0-GCC-11.2.0 | ||
beagle-lib/4.0.0-foss-2021b- | beagle-lib/4.0.0-foss-2021b-CUA-11.4.1 | ||
binutils/2.32-GCCcore-8.3.0 | binutils/2.32-GCCcore-8.3.0 | ||
binutils/2.32 | binutils/2.32 | ||
| Line 632: | Line 695: | ||
canu/2.2-GCCcore-11.2.0 | canu/2.2-GCCcore-11.2.0 | ||
ccache/4.6.3-GCCcore-11.2.0 | ccache/4.6.3-GCCcore-11.2.0 | ||
cfour/2.1-intel-2021b-mpi | |||
cfour/2.1-intel-2021b-serial | |||
cppy/1.1.0-GCCcore-11.2.0 | cppy/1.1.0-GCCcore-11.2.0 | ||
cppy/1.2.1-GCCcore-11.3.0 | |||
cuNN/8.2.1.32-CUA-11.3.1 | |||
cuNN/8.2.2.26-CUA-11.4.1 | |||
cuNN/8.4.1.50-CUA-11.7.0 | |||
cuNN/8.8.0.121-CUA-12.0.0 | |||
cutadapt/3.5-GCCcore-11.2.0 | cutadapt/3.5-GCCcore-11.2.0 | ||
dask/2022.1.0-foss-2021b | dask/2022.1.0-foss-2021b | ||
| Line 642: | Line 708: | ||
dill/0.3.6-GCCcore-11.3.0 | dill/0.3.6-GCCcore-11.3.0 | ||
dm-tree/0.1.6-GCCcore-11.2.0 | dm-tree/0.1.6-GCCcore-11.2.0 | ||
dorado/0.3.0- | dorado/0.3.0-CUA-11.4.1 | ||
double-conversion/3.1.5-GCCcore-11.2.0 | double-conversion/3.1.5-GCCcore-11.2.0 | ||
double-conversion/3.2.0-GCCcore-11.3.0 | double-conversion/3.2.0-GCCcore-11.3.0 | ||
eggnog-mapper/2.1.9-foss-2022a | eggnog-mapper/2.1.9-foss-2022a | ||
einops/0.4.1-GCCcore-11.2.0 | |||
elfutils/0.185-GCCcore-11.2.0 | elfutils/0.185-GCCcore-11.2.0 | ||
expat/2.2.7-GCCcore-8.3.0 | expat/2.2.7-GCCcore-8.3.0 | ||
| Line 653: | Line 720: | ||
expat/2.4.9-GCCcore-12.2.0 | expat/2.4.9-GCCcore-12.2.0 | ||
expecttest/0.1.3-GCCcore-11.2.0 | expecttest/0.1.3-GCCcore-11.2.0 | ||
fastStructure/1.0-foss-2022a-Python-2.7.18 | |||
fastahack/1.0.0-GCCcore-11.2.0 | fastahack/1.0.0-GCCcore-11.2.0 | ||
fastp/0.23.2-GCC-11.2.0 | fastp/0.23.2-GCC-11.2.0 | ||
| Line 660: | Line 728: | ||
filevercmp/20191210-GCCcore-11.2.0 | filevercmp/20191210-GCCcore-11.2.0 | ||
flatbuffers-python/2.0-GCCcore-11.2.0 | flatbuffers-python/2.0-GCCcore-11.2.0 | ||
flatbuffers-python/2.0-GCCcore-11.3.0 | |||
flatbuffers/2.0.0-GCCcore-11.2.0 | flatbuffers/2.0.0-GCCcore-11.2.0 | ||
flatbuffers/2.0.7-GCCcore-11.3.0 | flatbuffers/2.0.7-GCCcore-11.3.0 | ||
| Line 673: | Line 742: | ||
foss/2021b | foss/2021b | ||
foss/2022a | foss/2022a | ||
freebayes/1.3.6-foss-2021b-R-4.1.2 | |||
freeglut/3.2.1-GCCcore-11.2.0 | freeglut/3.2.1-GCCcore-11.2.0 | ||
freetype/2.11.0-GCCcore-11.2.0 | freetype/2.11.0-GCCcore-11.2.0 | ||
freetype/2.12.1-GCCcore-11.3.0 | freetype/2.12.1-GCCcore-11.3.0 | ||
fsom/20141119-GCCcore-11.2.0 | fsom/20141119-GCCcore-11.2.0 | ||
gaussian/09- | gaussian/09-AM-SSE4a | ||
gaussian/09-Intel-SSE4_2 | gaussian/09-Intel-SSE4_2 | ||
gaussian/16-AVX | gaussian/16-AVX | ||
gaussian/16-AVX2 | gaussian/16-AVX2 | ||
gaussian/16-SSE4 | gaussian/16-SSE4 | ||
gc/8.2.0-GCCcore-11.2.0 | gc/7.6.12-GCCcore-8.3.0 | ||
gc/8.2.0-GCCcore-11.2.0 | |||
gettext/0.19.8.1 | gettext/0.19.8.1 | ||
gettext/0.21-GCCcore-11.2.0 | gettext/0.21-GCCcore-11.2.0 | ||
| Line 725: | Line 796: | ||
hwloc/2.8.0-GCCcore-12.2.0 | hwloc/2.8.0-GCCcore-12.2.0 | ||
hypothesis/4.57.1-GCCcore-11.2.0-Python-2.7.18 | hypothesis/4.57.1-GCCcore-11.2.0-Python-2.7.18 | ||
hypothesis/4.57.1-GCCcore-11.3.0-Python-2.7.18 | |||
hypothesis/6.14.6-GCCcore-11.2.0 | hypothesis/6.14.6-GCCcore-11.2.0 | ||
hypothesis/6.46.7-GCCcore-11.3.0 | hypothesis/6.46.7-GCCcore-11.3.0 | ||
| Line 740: | Line 812: | ||
intltool/0.51.0-GCCcore-11.2.0 | intltool/0.51.0-GCCcore-11.2.0 | ||
intltool/0.51.0-GCCcore-11.3.0 | intltool/0.51.0-GCCcore-11.3.0 | ||
jax/0.3.23-foss-2021b- | jax/0.3.23-foss-2021b-CUA-11.4.1 | ||
jax/0.3.25-foss-2022a-CUA-11.7.0 | |||
jbigkit/2.1-GCCcore-11.2.0 | jbigkit/2.1-GCCcore-11.2.0 | ||
jbigkit/2.1-GCCcore-11.3.0 | jbigkit/2.1-GCCcore-11.3.0 | ||
| Line 781: | Line 854: | ||
libglvnd/1.3.3-GCCcore-11.2.0 | libglvnd/1.3.3-GCCcore-11.2.0 | ||
libglvnd/1.4.0-GCCcore-11.3.0 | libglvnd/1.4.0-GCCcore-11.3.0 | ||
libgtextutils/0.7-GCCcore-11.2.0 | |||
libharu/2.3.0-foss-2021b | libharu/2.3.0-foss-2021b | ||
libiconv/1.16-GCCcore-11.2.0 | libiconv/1.16-GCCcore-11.2.0 | ||
| Line 787: | Line 861: | ||
libjpeg-turbo/2.0.6-GCCcore-11.2.0 | libjpeg-turbo/2.0.6-GCCcore-11.2.0 | ||
libjpeg-turbo/2.1.3-GCCcore-11.3.0 | libjpeg-turbo/2.1.3-GCCcore-11.3.0 | ||
libmatheval/1.1.11-GCCcore-8.3.0 | |||
libogg/1.3.5-GCCcore-11.2.0 | libogg/1.3.5-GCCcore-11.2.0 | ||
libogg/1.3.5-GCCcore-11.3.0 | libogg/1.3.5-GCCcore-11.3.0 | ||
| Line 813: | Line 888: | ||
libtool/2.4.7-GCCcore-11.3.0 | libtool/2.4.7-GCCcore-11.3.0 | ||
libtool/2.4.7-GCCcore-12.2.0 | libtool/2.4.7-GCCcore-12.2.0 | ||
libunistring/1.0-GCCcore-11.2.0 | libunistring/0.9.10-GCCcore-8.3.0 | ||
libunistring/1.0-GCCcore-11.2.0 | |||
libunwind/1.5.0-GCCcore-11.2.0 | libunwind/1.5.0-GCCcore-11.2.0 | ||
libunwind/1.6.2-GCCcore-11.3.0 | libunwind/1.6.2-GCCcore-11.3.0 | ||
| Line 820: | Line 896: | ||
libvorbis/1.3.7-GCCcore-11.3.0 | libvorbis/1.3.7-GCCcore-11.3.0 | ||
libwebp/1.2.0-GCCcore-11.2.0 | libwebp/1.2.0-GCCcore-11.2.0 | ||
libxc/5.2.3-GCC-11.2.0 | libxc/5.1.6-GCC-11.2.0 | ||
libxc/5.2.3-GCC-11.2.0 | |||
libxml++/2.42.1-GCC-11.2.0 | libxml++/2.42.1-GCC-11.2.0 | ||
libxml2/2.9.9-GCCcore-8.3.0 | libxml2/2.9.9-GCCcore-8.3.0 | ||
| Line 832: | Line 909: | ||
libyaml/0.2.5-GCCcore-11.3.0 | libyaml/0.2.5-GCCcore-11.3.0 | ||
lpsolve/5.5.2.11-GCC-11.2.0 | lpsolve/5.5.2.11-GCC-11.2.0 | ||
lpsolve/5.5.2.11-GCC-11.3.0 | |||
lxml/4.6.3-GCCcore-11.2.0 | lxml/4.6.3-GCCcore-11.2.0 | ||
lz4/1.9.3-GCCcore-11.2.0 | lz4/1.9.3-GCCcore-11.2.0 | ||
lz4/1.9.3-GCCcore-11.3.0 | lz4/1.9.3-GCCcore-11.3.0 | ||
maeparser/1.3.0-gompi-2021b | maeparser/1.3.0-gompi-2021b | ||
magma/2.6.2-foss-2021b- | magma/2.6.2-foss-2021b-CUA-11.4.1 | ||
make/4.3-GCCcore-11.2.0 | make/4.3-GCCcore-11.2.0 | ||
make/4.3-GCCcore-11.3.0 | make/4.3-GCCcore-11.3.0 | ||
makeinfo/6.7-GCCcore-8.3.0-minimal | makeinfo/6.7-GCCcore-8.3.0-minimal | ||
makeinfo/6.7-GCCcore-10.2.0-minimal | makeinfo/6.7-GCCcore-10.2.0-minimal | ||
matlab/R2022b | |||
matlab/R2023a | |||
matplotlib/2.2.5-foss-2021b-Python-2.7.18 | matplotlib/2.2.5-foss-2021b-Python-2.7.18 | ||
matplotlib/2.2.5-foss-2022a-Python-2.7.18 | |||
matplotlib/3.4.3-foss-2021b | matplotlib/3.4.3-foss-2021b | ||
matplotlib/3.5.2-foss-2021b | matplotlib/3.5.2-foss-2021b | ||
matplotlib/3.5.2-foss-2022a | |||
methylpy/1.4.6-foss-2021b | methylpy/1.4.6-foss-2021b | ||
minimap2/2.22-GCCcore-11.2.0 | minimap2/2.22-GCCcore-11.2.0 | ||
minimap2/2.24-GCCcore-11.2.0 | minimap2/2.24-GCCcore-11.2.0 | ||
mm-common/1.0.5-GCCcore-11.2.0 | mm-common/1.0.5-GCCcore-11.2.0 | ||
molmod/1.4.8-foss-2021b | |||
motif/2.3.8-GCCcore-11.2.0 | motif/2.3.8-GCCcore-11.2.0 | ||
multichoose/1.0.3-GCCcore-11.2.0 | multichoose/1.0.3-GCCcore-11.2.0 | ||
| Line 862: | Line 945: | ||
ncurses/6.3-GCCcore-12.2.0 | ncurses/6.3-GCCcore-12.2.0 | ||
ncurses/6.3 | ncurses/6.3 | ||
netCF-Fortran/4.5.3-gompi-2021b | |||
netCF/4.8.1-gompi-2021b | |||
netCF/4.9.0-gompi-2022a | |||
netMHCpan/4.1b | |||
nettle/3.7.3-GCCcore-11.2.0 | nettle/3.7.3-GCCcore-11.2.0 | ||
nettle/3.8-GCCcore-11.3.0 | nettle/3.8-GCCcore-11.3.0 | ||
| Line 880: | Line 964: | ||
numactl/2.0.16-GCCcore-12.2.0 | numactl/2.0.16-GCCcore-12.2.0 | ||
numexpr/2.8.4-foss-2021b | numexpr/2.8.4-foss-2021b | ||
parallel/20221122-GCCcore-11.2.0 | pandasql/0.7.3-foss-2021b-Python-3.9.6 | ||
parallel/20210722-GCCcore-11.2.0 | |||
parallel/20221122-GCCcore-11.2.0 | |||
pblat/2.5-GCCcore-8.3.0 | |||
picard/2.25.1-Java-11 | picard/2.25.1-Java-11 | ||
picard/2.27.5-Java-15 | picard/2.27.5-Java-15 | ||
| Line 905: | Line 992: | ||
protobuf/3.17.3-GCCcore-11.2.0 | protobuf/3.17.3-GCCcore-11.2.0 | ||
protobuf/3.19.4-GCCcore-11.3.0 | protobuf/3.19.4-GCCcore-11.3.0 | ||
psutil/5.9.4-GCCcore-11.2.0 | |||
purge_dups/1.2.5-foss-2021b | purge_dups/1.2.5-foss-2021b | ||
pyBigWig/0.3.18-foss-2021b | pyBigWig/0.3.18-foss-2021b | ||
| Line 910: | Line 998: | ||
pybind11/2.7.1-GCCcore-11.2.0-Python-2.7.18 | pybind11/2.7.1-GCCcore-11.2.0-Python-2.7.18 | ||
pybind11/2.7.1-GCCcore-11.2.0 | pybind11/2.7.1-GCCcore-11.2.0 | ||
pybind11/2.7.1-GCCcore-11.3.0-Python-2.7.18 | |||
pybind11/2.9.2-GCCcore-11.3.0 | pybind11/2.9.2-GCCcore-11.3.0 | ||
pytest-xdist/2.5.0-GCCcore-11.2.0 | pytest-xdist/2.5.0-GCCcore-11.2.0 | ||
pytest-xdist/2.5.0-GCCcore-11.3.0 | |||
pytest/7.1.3-GCCcore-11.2.0 | |||
python-isal/0.11.1-GCCcore-11.2.0 | python-isal/0.11.1-GCCcore-11.2.0 | ||
python-isal/1.1.0-GCCcore-11.2.0 | python-isal/1.1.0-GCCcore-11.2.0 | ||
re2c/2.2-GCCcore-11.2.0 | re2c/2.2-GCCcore-11.2.0 | ||
rjags/4-12-foss-2021b-R-4.2.1 | |||
scikit-bio/0.5.7-foss-2021b | scikit-bio/0.5.7-foss-2021b | ||
scikit-build/0.11.1-GCCcore-11.2.0 | scikit-build/0.11.1-GCCcore-11.2.0 | ||
scikit-image/0.19.1-foss-2021b | scikit-image/0.19.1-foss-2021b | ||
scikit-learn/1.0.1-foss-2021b | scikit-learn/1.0.1-foss-2021b | ||
scikit-learn/1.1.2-foss-2022a | |||
scikit-optimize/0.9.0-foss-2021b | scikit-optimize/0.9.0-foss-2021b | ||
seqtk/1.3-GCC-11.2.0 | seqtk/1.3-GCC-11.2.0 | ||
| Line 931: | Line 1,024: | ||
tRNAscan-SE/2.0.12-GCC-11.2.0 | tRNAscan-SE/2.0.12-GCC-11.2.0 | ||
tabixpp/1.1.0-GCC-11.2.0 | tabixpp/1.1.0-GCC-11.2.0 | ||
tbb/2019_U9-GCCcore-8.3.0 | |||
tbb/2020.3-GCCcore-11.2.0 | tbb/2020.3-GCCcore-11.2.0 | ||
tbb/2021.5.0-GCCcore-11.3.0 | tbb/2021.5.0-GCCcore-11.3.0 | ||
tcsh/6.24.01-GCCcore-11.2.0 | tcsh/6.24.01-GCCcore-11.2.0 | ||
tensorboard/2.8.0-foss-2021b | |||
time/1.9-GCCcore-11.2.0 | time/1.9-GCCcore-11.2.0 | ||
tmux/3.3a-GCCcore-11.3.0 | |||
tqdm/4.62.3-GCCcore-11.2.0 | tqdm/4.62.3-GCCcore-11.2.0 | ||
typing-extensions/3.10.0.2-GCCcore-11.2.0 | typing-extensions/3.10.0.2-GCCcore-11.2.0 | ||
| Line 940: | Line 1,036: | ||
ucsc/443 | ucsc/443 | ||
utf8proc/2.6.1-GCCcore-11.2.0 | utf8proc/2.6.1-GCCcore-11.2.0 | ||
utf8proc/2.7.0-GCCcore-11.3.0 | |||
util-linux/2.37-GCCcore-11.2.0 | util-linux/2.37-GCCcore-11.2.0 | ||
util-linux/2.38-GCCcore-11.3.0 | util-linux/2.38-GCCcore-11.3.0 | ||
vcflib/1.0.3-foss-2021b-R-4.1.2 | |||
wget/1.21.3-GCCcore-11.3.0 | wget/1.21.3-GCCcore-11.3.0 | ||
x264/20210613-GCCcore-11.2.0 | x264/20210613-GCCcore-11.2.0 | ||
| Line 952: | Line 1,050: | ||
xprop/1.2.5-GCCcore-11.2.0 | xprop/1.2.5-GCCcore-11.2.0 | ||
xxd/8.2.4220-GCCcore-11.2.0 | xxd/8.2.4220-GCCcore-11.2.0 | ||
yaff/1.6.0-foss-2021b | |||
zlib/1.2.11-GCCcore-8.3.0 | zlib/1.2.11-GCCcore-8.3.0 | ||
zlib/1.2.11-GCCcore-10.2.0 | zlib/1.2.11-GCCcore-10.2.0 | ||
Latest revision as of 14:32, 4 August 2023
As part of our August 29-31,2023 maintenance window, the GACRC will be upgrading the Sapelo2 cluster operating system from CentOS 7 to Rocky 8.
Because this is a major OS update, we need to recompile all the applications and ensure that they work with the new version of OS.
Below is a list of the modules already installed on the Rocky 8 system. More software packages continue to be installed. If the software you need is not in this list yet, please feel free to let us know, if you would like us to install it centrally on the updated cluster.
All singularity containers available in /apps/singularity-images on the current Sapelo2 (CentOS 7) will continue to be available after the maintenance.
List of software already installed centrally on the Rocky 8 system (new Sapelo2, available after the maintenance)
3-NA/201008-foss-2021b-Python-2.7.18 ABySS/2.3.5-foss-2021b ACTC/1.1-GCCcore-11.2.0 AMIXTURE/1.3.0 AGAT/0.9.2-GCC-11.2.0 AGAT/1.1.0 AMOS/3.1.0-foss-2021b ANTLR/2.7.7-GCCcore-11.2.0-Java-11 ANTs/2.4.4-foss-2021b APR-util/1.6.1-GCCcore-11.2.0 APR/1.7.0-GCCcore-11.2.0 ART/2016.06.05-GCC-11.2.0 ASE/3.22.1-foss-2021b ASTRAL/5.7.8-Java-1.8.0_241 ATK/2.36.0-GCCcore-11.2.0 ATK/2.38.0-GCCcore-11.3.0 AUGUSTUS/3.4.0-foss-2021b AUGUSTUS/3.5.0-foss-2022a AlignGraph/2023-03-02-GCC-8.3.0 AlphaFold/2.3.4-foss-2022a-CUA-11.7.0-ColabFold Amber/22.0-foss-2021b-AmberTools-22.3-CUA-11.4.1 Anaconda3/2022.10 Archive-Zip/1.68-GCCcore-11.2.0 Armadillo/11.4.3-foss-2021b Armadillo/11.4.3-foss-2022a Arrow/8.0.0-foss-2021b Autoconf/2.69-GCCcore-8.3.0 Autoconf/2.69-GCCcore-10.2.0 Autoconf/2.71-GCCcore-11.2.0 Autoconf/2.71-GCCcore-11.3.0 Autoconf/2.71-GCCcore-12.2.0 Automake/1.16.1-GCCcore-8.3.0 Automake/1.16.2-GCCcore-10.2.0 Automake/1.16.4-GCCcore-11.2.0 Automake/1.16.5-GCCcore-11.3.0 Automake/1.16.5-GCCcore-12.2.0 Autotools/20180311-GCCcore-8.3.0 Autotools/20200321-GCCcore-10.2.0 Autotools/20210726-GCCcore-11.2.0 Autotools/20220317-GCCcore-11.3.0 Autotools/20220317-GCCcore-12.2.0 BBMap/38.98-GCC-11.2.0 BCFtools/1.14-GCC-11.2.0 BCFtools/1.15.1-GCC-11.3.0 BEOPS/2.4.41-foss-2021b BETools/2.30.0-GCC-11.2.0 BLAST+/2.2.31 BLAST+/2.12.0-gompi-2021b BLAST+/2.13.0-gompi-2021b BLAST+/2.13.0-gompi-2022a BLAST/2.2.26-Linux_x86_64 BLAT/3.5-GCC-11.2.0 BLAT/3.7-GCC-11.3.0 BLIS/0.8.1-GCC-11.2.0 BLIS/0.9.0-GCC-11.3.0 BRAKER/2.1.6-foss-2021b BRIG/0.95-gompi-2021b-Java-1.8.0_241 BUSCO/5.4.3-foss-2021b BWA/0.7.17-GCCcore-11.2.0 BamTools/2.5.2-GCC-11.2.0 BamTools/2.5.2-GCC-11.3.0 BamUtil/1.0.15-foss-2021b Bandage/0.9.0-GCCcore-11.2.0 BayeScan/2.1-foss-2019b Bazel/3.7.2-GCCcore-11.2.0 Bazel/4.2.2-GCCcore-11.2.0 Bazel/5.1.1-GCCcore-11.3.0 Beagle/5.4.22Jul22.46e-Java-11 Beast/2.7.1-foss-2021b-CUA-11.4.1 BigFT/1.9.1-foss-2021b Bio-B-HTS/3.01-GCC-11.2.0 BioPerl/1.7.8-GCCcore-11.2.0 BioPerl/1.7.8-GCCcore-11.3.0 Biopython/1.79-foss-2021b Biopython/1.79-foss-2022a Biopython/1.81-foss-2021b Bismark/0.23.1-foss-2021b Bison/3.3.2-GCCcore-8.3.0 Bison/3.3.2 Bison/3.7.1-GCCcore-10.2.0 Bison/3.7.6-GCCcore-11.2.0 Bison/3.8.2-GCCcore-11.3.0 Bison/3.8.2-GCCcore-12.2.0 Bison/3.8.2 Blosc/1.21.3-GCCcore-11.2.0 Boost.MPI/1.79.0-gompi-2022a Boost.Python/1.77.0-GCC-11.2.0 Boost/1.75.0-GCC-11.2.0 Boost/1.77.0-GCC-11.2.0 Boost/1.79.0-GCC-11.3.0 Bottleneck/1.3.7-foss-2022a Bowtie/1.3.1-GCC-11.2.0 Bowtie/1.3.1-GCC-11.3.0 Bowtie2/2.4.1-GCC-8.3.0 Bowtie2/2.4.4-GCC-11.2.0 Bowtie2/2.4.5-GCC-11.2.0 Bowtie2/2.4.5-GCC-11.3.0 Bracken/2.7-GCCcore-11.2.0 Brotli/1.0.9-GCCcore-11.2.0 Brotli/1.0.9-GCCcore-11.3.0 C-HIT/4.8.1-GCC-11.2.0 C-HIT/4.8.1-GCC-11.3.0 CFITSIO/3.49-GCCcore-11.2.0 CGAL/4.14.3-gompi-2021b CGmapTools/0.1.2-foss-2021b CMake/3.12.1 CMake/3.21.1-GCCcore-11.2.0 CMake/3.22.1-GCCcore-11.2.0 CMake/3.23.1-GCCcore-11.3.0 CMake/3.24.3-GCCcore-11.3.0 CUA/11.3.1 CUA/11.4.1 CUA/11.7.0 CUA/12.0.0 CapnProto/0.9.1-GCCcore-11.2.0 CellRanger/7.0.0 Centrifuge/1.0.4-gompi-2021b Cereal/1.3.0 CheMPS2/1.8.11-foss-2021b Check/0.15.2-GCCcore-11.2.0 CheckM/1.1.3-foss-2021b Chimera/1.16-linux_x86_64 Circos/0.69-9-GCCcore-11.2.0 Clang/13.0.1-GCCcore-11.2.0 Clustal-Omega/1.2.4-GCC-11.2.0 ClustalW2/2.1-GCC-11.2.0 Consed/29.0-foss-2021b Consed/29.0-foss-2022a CoordgenLibs/3.0.1-gompi-2021b CppUnit/1.15.1-GCCcore-11.2.0 Cufflinks/20190706-GCC-11.2.0 Cython/0.27.3-GCCcore-11.3.0-Python-2.7.18 Cytoscape/3.9.1-Java-11 B/18.1.32-GCCcore-8.3.0 B/18.1.40-GCCcore-10.2.0 B/18.1.40-GCCcore-11.2.0 B/18.1.40-GCCcore-11.3.0 B/18.1.40-GCCcore-12.2.0 B-mysql/4.050-GCC-11.2.0 B_File/1.857-GCCcore-11.2.0 B_File/1.858-GCCcore-11.3.0 Bus/1.13.18-GCCcore-11.2.0 Bus/1.14.0-GCCcore-11.3.0 IAMON/2.0.13-GCC-11.2.0 IAMON/2.0.15-GCC-11.2.0 IAMON/2.1.0-GCC-11.3.0 ataWarrior/5.5.0 endroPy/4.5.2-GCCcore-11.2.0 eve-Size/0.83-GCCcore-11.2.0-Perl-5.34.0 ockQ/1.0-foss-2022a oxygen/1.9.1-GCCcore-11.2.0 oxygen/1.9.4-GCCcore-11.3.0 ELPA/2021.11.001-foss-2021b EMBOSS/6.6.0-foss-2021b ETE/3.1.2-foss-2021b EasyBuild/4.6.0 Eigen/3.3.9-GCCcore-11.2.0 Eigen/3.4.0-GCCcore-11.2.0 Eigen/3.4.0-GCCcore-11.3.0 EnTAP/0.10.8-beta-foss-2021b Exonerate/2.4.0-GCC-11.2.0 Exonerate/2.4.0-GCC-11.3.0 FASTX-Toolkit/0.0.14-GCC-11.2.0 FFTW.MPI/3.3.10-gompi-2022a FFTW/3.3.8-gompi-2019b FFTW/3.3.10-GCC-11.3.0 FFTW/3.3.10-gompi-2021b FFmpeg/4.3.2-GCCcore-11.2.0 FLAC/1.3.3-GCCcore-11.2.0 FLAC/1.3.4-GCCcore-11.3.0 FLASH/2.2.00-GCC-11.2.0 FLTK/1.3.7-GCCcore-11.2.0 FSL/6.0.5.1-foss-2021b FTGL/2.4.0-GCCcore-11.3.0 FastANI/1.33-GCC-11.2.0 FastME/2.1.6.1-GCC-11.2.0 FastQC/0.11.9-Java-11 FastTree/2.1.11-GCCcore-11.2.0 Flask/2.0.2-GCCcore-11.2.0 Flask/2.2.2-GCCcore-11.3.0 FlexiBLAS/3.0.4-GCC-11.2.0 FlexiBLAS/3.2.0-GCC-11.3.0 Flye/2.9.1-GCC-11.2.0 FragGeneScan/1.31-GCCcore-11.2.0 FreeImage/3.18.0-GCCcore-11.2.0 FreeSurfer/7.4.1-foss-2021b FriBidi/1.0.10-GCCcore-11.2.0 FriBidi/1.0.12-GCCcore-11.3.0 GATK/4.3.0.0-GCCcore-11.2.0-Java-11 GATK/4.3.0.0-GCCcore-11.2.0-Java-13.0.2 GATK/4.3.0.0-GCCcore-11.3.0-Java-11 GCC/8.3.0 GCC/10.2.0 GCC/11.2.0 GCC/11.3.0 GCC/12.2.0 GCCcore/8.3.0 GCCcore/10.2.0 GCCcore/11.2.0 GCCcore/11.3.0 GCCcore/12.2.0 G/2.75-GCCcore-11.2.0 GAL/3.3.2-foss-2021b GAL/3.5.0-foss-2022a GRCopy/2.3-GCCcore-11.2.0 GRCopy/2.3-GCCcore-11.3.0 GEM/1.5.1-foss-2022a GEOS/3.9.1-GCC-11.2.0 GEOS/3.10.3-GCC-11.3.0 GLPK/5.0-GCCcore-11.2.0 GLPK/5.0-GCCcore-11.3.0 GLib/2.69.1-GCCcore-11.2.0 GLib/2.72.1-GCCcore-11.3.0 GLibmm/2.66.4-GCCcore-11.2.0 GMAP-GSNAP/2021-21-17-GCC-11.2.0 GMAP-GSNAP/2023-02-17-GCC-11.3.0 GMP/6.1.2-GCCcore-8.3.0 GMP/6.2.1-GCCcore-11.2.0 GMP/6.2.1-GCCcore-11.3.0 GObject-Introspection/1.68.0-GCCcore-11.2.0 GObject-Introspection/1.72.0-GCCcore-11.3.0 GROMACS/2021.5-foss-2021b-CUA-11.4.1-PLUME-2.8.0 GSL/2.7-GCC-11.2.0 GSL/2.7-GCC-11.3.0 GST-plugins-base/1.18.5-GCC-11.2.0 GStreamer/1.18.5-GCC-11.2.0 GTK+/3.24.23-GCCcore-11.3.0 GTK2/2.24.33-GCCcore-11.3.0 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