NCL-Teaching: Difference between revisions
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[[Category: | [[Category:Teaching]][[Category:Software]][[Category:Other]] | ||
=== Category === | === Category === | ||
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=== Running Program === | === Running Program === | ||
Also refer to [[ | Also refer to [[Running_Jobs_on_the_teaching_cluster]] | ||
For more information on Environment Modules on Sapelo2 please see the [[Lmod]] page. | For more information on Environment Modules on Sapelo2 please see the [[Lmod]] page. | ||
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<pre class="gscript"> | <pre class="gscript"> | ||
# | #!/bin/bash | ||
# | #SBATCH --job-name=j_NCL | ||
# | #SBATCH --partition=batch | ||
# | #SBATCH --ntasks=1 | ||
# | #SBATCH --mem=2gb | ||
# | #SBATCH --time=04:00:00 | ||
#SBATCH --output=NCL.%j.out | |||
#SBATCH --error=NCL.%j.err | |||
cd $ | #SBATCH --mail-user=username@uga.edu | ||
#SBATCH --mail-type=END,FAIL | |||
cd $SLURM_SUBMIT_DIR | |||
module load NCL/6.5.0-foss-2018a | module load NCL/6.5.0-foss-2018a | ||
export NCARG_ROOT=$EBROOTNCL | |||
ncl [options] | ncl [options] | ||
</pre> | </pre> | ||
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Submit the job to the queue with | Submit the job to the queue with | ||
<pre class="gcommand"> | <pre class="gcommand"> | ||
sbatch sub.sh | |||
</pre> | </pre> | ||
Latest revision as of 11:45, 18 February 2019
Category
Other
Program On
Teaching
Version
6.4.0, 6.5.0
Author / Distributor
Please see https://www.ncl.ucar.edu/
When citing NCL, please use the following: The NCAR Command Language (Version 6.5.0) [Software]. (2018). Boulder, Colorado: UCAR/NCAR/CISL/TDD. http://dx.doi.org/10.5065/D6WD3XH5"
Description
From https://www.ncl.ucar.edu/: "NCL is an interpreted language designed specifically for scientific data analysis and visualization."
Running Program
Also refer to Running_Jobs_on_the_teaching_cluster
For more information on Environment Modules on Sapelo2 please see the Lmod page.
- Version 6.4.0, installed in /usr/local/apps/eb/NCL/6.4.0-foss-2016b
- Version 6.5.0, installed in /usr/local/apps/eb/NCL/6.5.0-foss-2018a
To use version 6.4.0, please first load the module with
module load NCL/6.4.0-foss-2016b
To use version 6.5.0, please first load the module with
module load NCL/6.5.0-foss-2018a
Sample job submission script (sub.sh) to run version 6.5.0 ncl in a batch job:
#!/bin/bash #SBATCH --job-name=j_NCL #SBATCH --partition=batch #SBATCH --ntasks=1 #SBATCH --mem=2gb #SBATCH --time=04:00:00 #SBATCH --output=NCL.%j.out #SBATCH --error=NCL.%j.err #SBATCH --mail-user=username@uga.edu #SBATCH --mail-type=END,FAIL cd $SLURM_SUBMIT_DIR module load NCL/6.5.0-foss-2018a export NCARG_ROOT=$EBROOTNCL ncl [options]
where [options] are ncl options and arguments you want to use. Other parameters of the job, such as the maximum wall clock time, maximum memory, and the job name need to be modified appropriately as well.
Submit the job to the queue with
sbatch sub.sh
Documentation
Please see http://www.ncl.ucar.edu/Document/
Examples are available at http://www.ncl.ucar.edu/Applications/
module load NCL/6.5.0-foss-2018a ncl -h Usage: ncl -fhnopxsPQV <args> <file.ncl> -f: use new file structure and NetCDF4 features when possible -h: print this message and exit -n: don't enumerate values in print() -o: retain former behavior for certain backwards-incompatible changes -p: don't page output from the system() command -x: echo NCL commands -s: disable pre-loading of default script files -P: enable NCL profiler -Q: turn off echo of NCL version and copyright info -V: print NCL version and exit
Installation
- Version 6.4.0, 6.5.0 pre-compiled binary codes downloaded from http://www.ncl.ucar.edu/Download/install_from_binary.shtml
System
64-bit Linux