Software2: Difference between revisions

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Below is a partial list of software packages installed on Sapelo, Sapelo2, Teaching (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2/Teaching, along with a short description, please run the following command on Sapelo2/Teaching:
<pre class="gcommand">
module spider
</pre>
You can also use the command above to search for a specific application. For more information, please see [[Lmod]].
==Installed Software List==
==Installed Software List==
Last updated '''{{REVISIONYEAR}}-{{REVISIONMONTH}}-{{REVISIONDAY2}}'''.
Last updated '''{{REVISIONYEAR}}-{{REVISIONMONTH}}-{{REVISIONDAY2}}'''.
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! scope="col" width="160px"| Category
! scope="col" width="160px"| Category
! scope="col" width="60px"| Cluster
! scope="col" width="60px"| Cluster
! scope="col" width="20px"|
! scope="col" width="20px"| Top
|-
|-
<!--LIST BEGIN-->
<!--LIST BEGIN-->
| [[AUGUSTUS-Teaching|AUGUSTUS]] ||3.2.3|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| <span id ="0"></span>[[4p-Sapelo |4p]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BCFtools-Teaching|BCFtools]] ||1.3.1 1.8 1.6 1.3.1, 1.8, 1.6, 1.3.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[4p-Sapelo2 |4p]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BEDTools-Teaching|BEDTools]] ||2.26.0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| <span id ="A"></span>[[ABySS-Sapelo|ABySS]] || 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Biopython-Teaching|Biopython]] ||1.68 1.68 1.68, 1.68, 1.68|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[ABySS-Sapelo2|ABySS]] || 1.9.0, 2.0.2, 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BLAST-Teaching|BLAST]] ||2.2.26|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[ADMIXTURE-Sapelo2|ADMIXTURE]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Bowtie2-Teaching|Bowtie2]] ||2.2.3 2.3.4.1 2.3.3 2.2.3, 2.3.4.1, 2.3.3, 2.2.3|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[AFNI-Sapelo2|AFNI]] || 17.3.05 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BWA-Teaching|BWA]] ||0.7.15 0.7.17 0.7.15, 0.7.17, 0.7.15|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[AGE-Sapelo|AGE]] || 0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[canu-Teaching|Canu]] ||1.4 1.7 1.6 1.5 1.4, 1.7, 1.6, 1.5, 1.4|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[AMBER-Sapelo|AMBER]] || 14 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[GATK-Teaching|GATK]] ||3.4-0 3.8-0 3.4-0, 3.8-0, 3.4-0|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[AMBER-Sapelo2|AMBER]] || 14 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Java-Teaching|Java]] ||1.8.0_92 1.8.0_144 1.8.0_141 1.8.0_121 1.8.0_112 1.8.0_92, 1.8.0_144, 1.8.0_141, 1.8.0_121, 1.8.0_112, 1.8.0_92|| [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[AMOS-Sapelo2|AMOS]] || 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[MAFFT-Teaching|MAFFT]] ||7.130 7.313 7.273 7.130, 7.313, 7.273, 7.130|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[ANI-Sapelo|ANI]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Perl-Teaching|Perl]] ||5.20.3 5.26.1 5.26.1 5.26.0 5.24.1 5.24.0 5.20.3, 5.26.1, 5.26.1, 5.26.0, 5.24.1, 5.24.0, 5.20.3|| [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[ANNOgesic-Sapelo|ANNOgesic]] || 0.6.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Python-Teaching|Python]] ||2.7.12 3.6.4 3.5.2 2.7.14 2.7.14 2.7.14 2.7.14 2.7.14 2.7.12, 3.6.4, 3.5.2, 2.7.14, 2.7.14, 2.7.14, 2.7.14, 2.7.14, 2.7.12|| [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[ANSYS-Sapelo|ANSYS]] || 16.2 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="Q"></span>[[Qiime-Sapelo|Qiime]] || 1.9.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[ARC-Sapelo|ARC]] || 1.1.4-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[RAxML-Teaching|RAxML]] ||8.2.11 8.2.11 8.2.11, 8.2.11, 8.2.11|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[ART-Sapelo|ART]] || 20160605 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SAMtools-Teaching|SAMtools]] ||0.1.19 1.6 1.3.1 1.3.1 0.1.19, 1.6, 1.3.1, 1.3.1, 0.1.19|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[ART-Sapelo2|ART]] || 20160605 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Stacks-Teaching|Stacks]] ||1.48 2.0 1.48, 2.0, 1.48|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[ASTRAL-Sapelo2|ASTRAL]] || 5.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[STAR-Teaching|STAR]] ||2.5.3a 2.6.0c 2.5.3a, 2.6.0c, 2.5.3a|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[AStalavista-Sapelo|AStalavista]] || 3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[SWIG]] || 3.0.2 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| [[AUGUSTUS-Sapelo2|AUGUSTUS]] || 3.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="T"></span>[[T-Coffee-Sapelo|T-Coffee]] ||11.00.8cbe486|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[AUGUSTUS-Teaching|AUGUSTUS]] || 3.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[T-REX-Sapelo|T-REX]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[aeneas-Sapelo|aeneas]] || 1.7.3 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[tabix]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| [[AlignGraph-Sapelo2|AlignGraph]] || 20180709 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id="Z"></span>[[Zbar-Sapelo|Zbar]] || 0.10 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[AlleleSeq_pipeline-Sapelo2|AlleleSeq_pipeline]] || 1.2a || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[zlib-Sapelo|zlib]] || 1.2.5, 1.2.8 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[Allmaps-Sapelo|Allmaps]] || 0.6.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[amos-Sapelo|amos]] || 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Anaconda2-Sapelo|Anaconda2]] || 4.2.0, 4.3.0, 4.4.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Anaconda2-Sapelo2|Anaconda2]] || 5.0.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Anaconda3-Sapelo|Anaconda3]] || 4.2.0, 4.3.0, 5.0.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Anaconda3-Sapelo2|Anaconda3]] || 5.0.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Anaconda-Sapelo|Anaconda]] || 2.2.0, 2.5.0, 3-2.2.0, 2-4.1.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[annovar-Sapelo2|annovar]] || 2017Jul16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Apache-ant-Sapelo|apache-ant]] || 1.9.6 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Aragorn-Sapelo2|Aragorn]] || 1.2.38 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Arlequin-Sapelo2|Arlequin]] || 3.5.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Artemis-Sapelo2|Artemis]] || 17.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Artemis-Teaching|Artemis]] || 17.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Augustus-Sapelo|augustus]] || 3.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="B"></span>[[BAGEL-Sapelo|BAGEL]] || 2016.12.14, 2017.02.13 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BBMap-Sapelo |BBMap]] || 35.82 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BBMap-Sapelo2 |BBMap]] || 37.67 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BCFtools-Sapelo2|BCFtools]] || 1.3.1, 1.6, 1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BCFtools-Teaching|BCFtools]] || 1.3.1, 1.6, 1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BEAST-Sapelo|BEAST]] || 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BEDOPS-Sapelo2|BEDOPS]] || 2.4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BEDTools-Sapelo|BEDTools]] || 2.24.0, 2.25.0  2.26.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BEDTools-Sapelo2|BEDTools]] || 2.26.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BEDTools-Teaching|BEDTools]] || 2.26.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BEDops-Sapelo|BEDops]] || 2.4.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BEST-Sapelo|BEST]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BLAST+-Teaching|BLAST+]] || 2.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BLAST-Sapelo2|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BLAST-Teaching|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BLAT-Sapelo2|BLAT]] || 3.4, 3.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BP&P-Sapelo|BP&P]] || 4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BS Seeker2-Sapelo|BS Seeker2]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BUSCO-Sapelo|BUSCO]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BWA-Sapelo2|BWA]] || 0.7.15, 0.7.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BWA-Teaching|BWA]] || 0.7.17, 0.7.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BaitsTools-Sapelo|BaitsTools]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[bam-readcount-Sapelo|bam-readcount]] || 0.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BamTools-Sapelo2|BamTools]] || 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Bamtools-Sapelo|Bamtools]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Barrnap-Sapelo2|Barrnap]] || 0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[basespace-cli-Sapelo|basespace-cli]] || 0.8.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BayesAss-Sapelo2|BayesAss]] || 3.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Bazel-Sapelo|Bazel]] || 0.4.5 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Bazel-Sapelo2|Bazel]] || 0.8.1, 0.11.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[bcftools-Sapelo|bcftools]] || 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[bcl2fastq-Sapelo|bcl2fastq]] || 2.17.1.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[bcl2fastq-Sapelo2|bcl2fastq]] || 2.20.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Beast-Sapelo2|Beast]] || 2.4.8pre || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BiBench-Sapelo|BiBench]] || 0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BioPerl-Sapelo|BioPerl]] || 1.6.923 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BioPerl-Sapelo2|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BioPerl-Teaching|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BioPython-Sapelo|BioPython]] || 1.66 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BioPython-Sapelo2|BioPython]] || 1.68 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Bioawk-Sapelo|bioawk]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BionanoSolve-Sapelo2|BionanoSolve]] || 3.2.1-04122018 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Biopython-Teaching|Biopython]] || 1.68 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Bismark-Sapelo|Bismark]] || 0.16.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Bison-Sapelo2|Bison]] || 2.7, 3.0.2, 3.0.4 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Blat-Sapelo|Blat]] || 36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Boost-Sapelo|Boost]] || 1.47.0, 1.57.0, 1.59.0 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Boost-Sapelo2|Boost]] || 1.54.0, 1.61.0, 1.63.0, 1.65.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[bowtie2-Sapelo|bowtie2]] || 2.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[bowtie2-Sapelo2|bowtie2]] || 2.2.3, 2.3.3, 2.3.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Bowtie2-Teaching|Bowtie2]] || 2.2.3, 2.3.3, 2.3.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[bowtie-Sapelo|bowtie]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Bowtie-Sapelo2|Bowtie]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[braker-Sapelo2|braker]] || 2.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BreakDancer-Sapelo2|BreakDancer]] || 1.4.5-foss-2016b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[breakdancer-Sapelo|breakdancer]] || 1.1.2_2013_03_08 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[bwa-Sapelo|Burrows-Wheeler Aligner (BWA)]] || 0.7.10, 0.7.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[busco-Sapelo2|busco]] || 3.0.2, 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="C"></span>[[CAP-miRSeq-Sapelo2|CAP-miRSeq]] || 05/20184 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CAP3-Sapelo2|CAP3]] || 03092015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CD-HIT-Sapelo2|CD-HIT]] || 4.6.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cDNA_Cupcake-Sapelo|CDNA_Cupcake]] || 3.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CENSOR-Sapelo2|CENSOR]] || 4.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CFOUR-Sapelo|CFOUR]] || 1.2, 2.00-beta || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CGAT-Sapelo|CGAT]] || 0.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CGmapTools-Sapelo|CGmapTools]] || 0.0.3b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CIRCexplorer2-Sapelo|CIRCexplorer2]] || 2.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CMake-Sapelo2|CMake]] || 3.0.0, 3.4.3, 3.5.2, 3.6.1, 3.6.2, 3.7.2, 3.8.0, 3.9.1, 3.9.5, 3.10.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CNVnator-Sapelo|CNVnator]] || 0.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CNVnator-Sapelo2|CNVnator]] || 0.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CONSEL-Sapelo|CONSEL]] || 0.20 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CPLEX-Sapelo|CPLEX]] || 12.6.3 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CPLEX-Sapelo2|CPLEX]] || 12.6.3 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CUDA-Sapelo|CUDA]] || 5.0.35, 6.5.14, 7.5.18, 8.0.61 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CUDA-Sapelo2|CUDA]] || 7.0.28, 7.5.18, 8.0.61, 8.0.61_375.26-GCC-5.4.0-2.26, 9.0.176 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cURL-Sapelo2|cURL]] || 7.49.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Caffe-Sapelo|Caffe]] || 12.04.2015 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Caffe-Sapelo2|Caffe]] || 04082018 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cairo-Sapelo|Cairo]] || 1.10.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cairo-Sapelo2|cairo]] || 1.14.6, 1.14.10, 1.14.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[canu-Sapelo|canu]] || 1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[canu-Sapelo2|canu]] || 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[canu-Teaching|Canu]] || 1.4, 1.5, 1.6, 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cap3-Sapelo|cap3]] || 03/09/2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cd-hit-Sapelo|cdhit]] || 4.6.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CellProfiler-Sapelo|CellProfiler]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[censor-Sapelo|censor]] || 4.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Centrifuge-Sapelo|Centrifuge]] || 2.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Check-Sapelo|Check]] || 0.10.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CheckM-Sapelo|CheckM]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Chimera-Sapelo2|Chimera]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Chromosomer-Sapelo|Chromosomer]] || 0.1.4a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[circlator-Sapelo|circlator]] || 1.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[circlator-Sapelo2|circlator]] || 1.5.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[circos-Sapelo|circos]] || 0.69 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Circos-Sapelo2|Circos]] || 0.69-6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cisa-Sapelo|cisa]] || 20140304 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cleaveland4-Sapelo|Cleaveland4]] || 4.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cleaveland4-Sapelo2|Cleaveland4]] || 4.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Clustal-Omega-Sapelo2|Clustal-Omega]] || 1.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ClustalW2-Sapelo2|ClustalW2]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ClustalW-Sapelo|ClustalW]] || 1.83 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[clusteringConsensus-Sapelo|clusteringConsensus]] || 1.02 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cmake-Sapelo|cmake]] || 2.8.12.2, 3.0.2, 3.7.2, 3.9.3 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cnv-seq-Sapelo|cnv-seq]] || 03132017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Conspred-Sapelo|Conspred]] || v1.32 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cortex_var-Sapelo|cortex_var]] || 1.0.5.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Croco_tools-Sapelo|Croco_tools]] || 1.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CrossMap-Sapelo|CrossMap]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cufflinks-Sapelo|cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cufflinks-Sapelo2|Cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cufflinks-Teaching|Cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cutadapt-Sapelo|Cutadapt]] || 1.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cutadapt-Sapelo2|cutadapt]] || 1.9.1, 1.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cv2-Sapelo|cv2]] || 3.3.0.10 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CytoScape-Sapelo|CytoScape]] || 3.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="D"></span>[[DBG2OLC-Sapelo2|DBG2OLC]] || 20170208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DBG2OLC-Teaching|DBG2OLC]] || 20170208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DDSCAT-Sapelo2|DDSCAT]] || 7.3.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DELLY-Sapelo|DELLY]] || 0.7.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DIAMOND-Sapelo|DIAMOND]] || 0.8.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DIAMOND-Sapelo2|DIAMOND]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DISCOVARdenovo-Sapelo2|DISCOVARdenovo]] || 52488 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DLCpar-Sapelo|DLCpar]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DLCpar-Sapelo2|DLCpar]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Danpos2-Sapelo|Danpos2]] || 2.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[datamash-Sapelo|datamash]] || 1.0.7 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Ddocent-Sapelo|ddocent]] || 2.2.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DeFCoM-Sapelo|DeFCoM]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DeconSeq-Sapelo|DeconSeq]] || 0.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[deepTools-Sapelo2|deepTools]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[deepnet-Sapelo|deepnet]] || 20151013 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[deeptools-Sapelo|deeptools]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DendroPy-Sapelo2|DendroPy]] || 4.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[dendropy-Sapelo|dendropy]] || 3.12.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[depict-Sapelo|depict]] || 140721 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[detect-NAHR-Sapelo|detect-NAHR]] || 2015.09.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Doxygen-Sapelo2|Doxygen]] || 1.8.7, 1.8.11, 1.8.13 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="E"></span>[[EIGENSOFT-Sapelo2|EIGENSOFT]] || 6.1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[EMBOSS-Sapelo|EMBOSS]] || 6.5.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[EMBOSS-Sapelo2|EMBOSS]] || 6.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[EMBOSS-Teaching|EMBOSS]] || 6.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[EMMAX-Sapelo2|EMMAX beta]] || beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[EPIG-Seq-Sapelo |EPIG-Seq]] || v01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ESMF-Sapelo2|ESMF]] || 7.0.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[emirge-Sapelo|emirge]] || 0.61.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[espeak-Sapelo|espeak]] || 1.48.04 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ExaML-Sapelo |ExaML]] || 3.0.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[exabayes-Sapelo |exabayes]] || 1.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[exonerate-Sapelo |exonerate]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Exonerate-Sapelo2 |Exonerate]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Exonerate-Teaching|Exonerate]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Expander-Sapelo|Expander]] || 7.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="F"></span>[[FALCON-Sapelo|FALCON]] || 0.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FALCON-Sapelo2|FALCON]] || 02282018_unzip || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FASTA-Sapelo2|FASTA]] || 36.3.5e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FASTQSim-Sapelo|FASTQSim]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FASTX-Toolkit-Sapelo2|FASTX-Toolkit]] || 0.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FFTW-Sapelo|FFTW]] || 2.1.5, 3.3.4 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FFTW-Sapelo2|FFTW]] || 3.3.4, 3.3.6, 3.3.7 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FFmpeg-Sapelo|FFmpeg]] || 2.8.2 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FFmpeg-Sapelo2|FFmpeg]] || 3.1.3, 3.4.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FIAT-Sapelo2|FIAT]] || 1.6.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FLASH-Sapelo|FLASH]] || 1.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FLASH-Sapelo2|FLASH]] || 1.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FLTK-Sapelo2|FLTK]] || 1.3.4 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Fast-Plast-Sapelo2|Fast-Plast]] || 1.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FastME-Sapelo|FastME]] || 2.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FastME-Sapelo2|FastME]] || 2.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FastPlast-Sapelo|FastPlast]] || 1.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FastQC-Sapelo|FastQC]] || 0.11.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FastQC-Sapelo2|FastQC]] || 0.11.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[fastSTRUCTURE-Sapelo2|FastSTRUCTURE]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[fastStructure-Sapelo|fastStructure]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FastTree-Sapelo2 |FastTree]] || 2.1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FastX-Sapelo|FastX]] || 0.0.13.2, 0.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[fastphase-Sapelo|fastphase]] || 1.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Find_Cns-Sapelo|Find_Cns]] || 2016/07/21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[fineRADstructure-Sapelo|fineRADstructure]] || 2016/12/09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FineSTRUCTURE-Sapelo|FineSTRUCTURE]] || 2.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[fineSTRUCTURE-Sapelo2|fineSTRUCTURE]] || 2.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FoX-Sapelo2|FoX]] || 4.1.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FreeSurfer-Sapelo|FreeSurfer]] || 6.0.0 || [[:Category:Medical-Informatics|Medical-Informatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Freebayes-Sapelo|Freebayes]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[freebayes-Sapelo2|Freebayes]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FriBidi-Sapelo2|FriBidi]] || 1.0.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="G"></span>[[GAG-Sapelo2|GAG]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GAG-Teaching|GAG]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GAMESS-Sapelo|GAMESS]] || 5Dec2014 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GAMESS-Sapelo2|GAMESS]] || 14Feb2018 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GAP-Sapelo|GAP]] || 4.8.7 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GAPIT-Sapelo2|GAPIT]] || 20180524 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GATK-Sapelo2|GATK]] || 3.4-0, 3.8-0, 4.0.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GATK-Teaching|GATK]] || 3.4-0, 3.8-0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GAUSSIAN-Sapelo|GAUSSIAN]] || 09 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GAUSSIAN-Sapelo2|GAUSSIAN]] || 09 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GAWN-Sapelo|GAWN]] || 0.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GBlocks-Sapelo2|GBlocks]] || 0.91b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GCTA-Sapelo |GCTA]] || 1.26.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GCTA-Sapelo2 |GCTA]] || 1.26.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GD-Sapelo2|GD]] || 2.66 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GDAL-Sapelo2|GDAL]] || 2.1.0, 2.2.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GDC-client-Sapelo |GDC-client]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GEM-library-Sapelo2 |GEM-library]] || 20130406-045632 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GEM-Sapelo |GEM]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GEOS-Sapelo2|GEOS]] || 3.6.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GFlow-Sapelo2|GFlow]] || 0.1.7 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GKIN-Sapelo|GKIN]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GLPK-Sapelo2|GLPK]] || 4.63, 4.65 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GLib-Sapelo2|GLib]] || 2.49.5, 2.53.5, 2.54.3 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GMA-Sapelo|GMA]] || 0.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GMAP-GSNAP-Sapelo2|GMAP-GSNAP]] || 2016-11-07 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GMATA-Sapelo|GMATA]] || 2017-01-14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GMP-Sapelo|GMP]] || 4.3.1, 6.0.0 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GMP-Sapelo2|GMP]] || 4.3.2, 6.1.1, 6.1.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GMPFRXX-Sapelo|GMPFRXX]] || 20081116 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GNU Compilers-Sapelo|GNU Compilers]] || 4.4.7, 4.7.4, 5.3.0 || [[:Category:Compiler|Compiler]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GObject-Introspection-Sapelo2|GObject-Introspection]] || 1.49.1, 1.54.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GSL-Sapelo|GSL]] || 1.16 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GSL-Sapelo2|GSL]] || 1.16, 2.1, 2.3. 2.4 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GStreamer-Sapelo2|GStreamer]] || 1.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GTK+-Sapelo2|GTK+]] || 2.24.31 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GTS-Sapelo2|GTS]] || 0.7.6 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gam-ngs-Sapelo|gam-ngs]] || 1.1b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GapFiller-Sapelo|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GapFiller-Sapelo2|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GapFiller-Teaching|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Gat-Sapelo|gat]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gatk-Sapelo|gatk]] || 3.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GaussView-Sapelo|GaussView]] || 5 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Gblocks-Sapelo|Gblocks]] || 0.91b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Gd-Sapelo|gd]] || 2.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gdal-Sapelo|gdal]] || 2.1.0 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gdc-client-Sapelo2 |gdc-client]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Gdk-pixbuf-Sapelo2|Gdk-pixbuf]] || 2.36.0 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Gemini-Sapelo |Gemini]] || 0.20.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GeneMark-ES-Sapelo|GeneMark-ES]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GeneMark.hmm.eukaryotic-Sapelo2|GeneMark.hmm.eukaryotic]] || 4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GeneMarkES-Sapelo2|GeneMarkES]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GeneMarkES-Teaching|GeneMarkES]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GeneMarkS-T-Sapelo2|GeneMarkS-T]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GeneMarkS-Sapelo2|GeneMarkS]] || 4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Gengetopt-Sapelo|Gengetopt]] || 2.22 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Genome-Sapelo2|Genome]] || Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GenomeTools-Sapelo |GenomeTools]] || 1.5.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GenomeTools-Sapelo2|GenomeTools]] || 1.5.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SMRTanalysis-Sapelo|GenomicConsensus]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gensim-Sapelo|gensim]] || 2.3.0 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[geos-Sapelo|geos]] || 3.5.0 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gerud3-Sapelo|Gerud3]] || 12202017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Gff3ToGenePred-Sapelo|gff3ToGenePred]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gffcompare-Sapelo|gffcompare]] || 0.10.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Gffcompare-Sapelo2|Gffcompare]] || 0.10.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gffread-Sapelo2|gffread]] || 0.9.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Ghostscript-Sapelo2|Ghostscript]] || 9.20, 9.22 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[git-Sapelo|git]] || 1.7.1, 2.7.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gmap-gsnap-Sapelo|gmap-gsnap]] || 2017-01-14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Gnuplot-Sapelo|gnuplot]] || 4.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gnuplot-Sapelo2|gnuplot]] || 5.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[google-cloud-Sapelo|google-cloud]] || 0.32.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GrADS-Sapelo|GrADS]] || 2.1a3 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[grace-Sapelo|grace]] || 5.1.25 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[grace-Sapelo2|grace]] || 5.1.25 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GraftM-Sapelo|GraftM]] || 0.10.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Graphviz-Sapelo|Graphviz]] || 2.40.1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Graphviz-Sapelo2|Graphviz]] || 2.40.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Gromacs-Sapelo |Gromacs]] || 5.0.2, 5.1.3 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Guile-Sapelo2|Guile]] || 1.8.8 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="H"></span>[[h5py-Sapelo|h5py]] || 2.6.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HDF5-Sapelo |HDF5]] || 1.8.6, 1.8.14 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HGTFinder-Sapelo|HGTFinder]] || 20170929 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HH-suite-Sapelo|HH-suite]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Hinge-Sapelo|HINGE]] || 032717 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HISAT2-Sapelo|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HISAT2-Sapelo2|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HISAT2-Teaching|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HMMER-Sapelo2|HMMER]] || 3.1b2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HPCGridRunner-Sapelo|HPCGridRunner]] || 1.0.2 || [[:Category:Tools|Tools]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HPCGridRunner-Sapelo2|HPCGridRunner]] || 1.0.2 || [[:Category:Tools|Tools]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HTSeq-Sapelo2|HTSeq]] || 0.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HUMAnN2-Sapelo|HUMAnN2]] || 0.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[hapcut2-Sapelo|hapcut2]] || 20170126 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Haploview-Sapelo|Haploview]] || 4.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Harp-Sapelo|harp]] || 130306_105556 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HiCUP-Sapelo|HiCUP]] || 0.5.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Hic-pro-Sapelo|hic-pro]] || 2.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[hindex-Sapelo2|hindex]] || 1.42 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HipMer-Sapelo|HipMer]] || 0.9.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Hmmer-Sapelo|Hmmer]] || 3.1b2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Homer-Sapelo|Homer]] || 4.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Homer-Sapelo2|Homer]] || 4.9.1, 4.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[htseq-Sapelo|htseq]] || 0.6.1p1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HyDe-Sapelo|HyDe]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HyPhy-Sapelo|HyPhy]] || 2.3.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="I"></span>[[I-TASSER-Sapelo|I-TASSER]] || 5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IDBA-Sapelo |IDBA]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IGV-Sapelo |IGV]] || 2.3.81 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IGV-Sapelo2 |IGV]] || 2.4.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IGVTools-Sapelo |IGVTools]] || 2.3.81 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IGVTools-Sapelo2 |IGVTools]] || 2.3.98 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IQ-Tree-Sapelo|IQ-Tree]] || 1.5.5, 1.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IQ-Tree-Sapelo2|IQ-Tree]] || 1.5.5, 1.6.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[iRep-Sapelo|iRep]] || 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ITSTool-Sapelo2|ITSTool]] || 2.0.4 || [[:Category:Utility|Utility]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[illumiprocessor-Sapelo |illumiprocessor]] || 2.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Infernal-Sapelo2|Infernal]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Intel Compilers-Sapelo|Intel Compilers]] || 14.0.0, 15.0.2 || [[:Category:Compiler|Compiler]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[iprscan-Sapelo|iprscan (InterProScan)]] || 5.16-55.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[iprscan-Sapelo2|iprscan (InterProScan)]] || 5.29-68.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ipyrad-Sapelo|ipyrad]] || 0.3.7, 0.5.15, 0.7.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ipyrad-Sapelo2|ipyrad]] || 0.7.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ipyrad-Teaching|Ipyrad]] || 0.7.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IsoSeq_SA3nUP-Sapelo|IsoSeq_SA3nUP]] || 09272017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[iva-Sapelo|iva]] || 1.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="J"></span>[[JAGS-Sapelo|JAGS]] || 3.4.0, 4.1.0, 4.2.0 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[JAGS-Sapelo2|JAGS]] || 4.3.0 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[JModelTest-Sapelo2|JModelTest]] || 2.1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[JasPer-Sapelo|JasPer]] || 1.900.1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[JasPer-Sapelo2|JasPer]] || 1.900.1, 2.0.12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Java-Sapelo|Java]] || 6, 7, 8 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Java-Sapelo2|Java]] || 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Java-Teaching|Java]] || 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Jellyfish-Sapelo|Jellyfish]] || 2.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Jellyfish-Sapelo2|Jellyfish]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Jupyter-Sapelo|Jupyter Notebook]] || 2.5.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="K"></span>[[KAT-Sapelo|KAT]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Kaiju-Sapelo2|Kaiju]] || 1.6.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[kallisto-Sapelo|kallisto]] || 0.42.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[kallisto-Sapelo2|kallisto]] || 0.43.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[kentUtils-Sapelo|KentUtils]] || 302.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[keras-Sapelo|keras]] || 1.0.8, 2.0.4 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[keras-Sapelo2|keras]] || 2.0.6 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[KmerGenie-Sapelo|KmerGenie]] || 1.7016 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[KmerGenie-Teaching|KmerGenie]] || 1.7044 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Kraken-Sapelo|Kraken]] || 0.10.5-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="L"></span>[[LAME-Sapelo2|LAME]] || 3.100 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LAMMPS-Sapelo |LAMMPS]] || 16Aug13, 5Sep14, 10Aug15, 7Dec15, 16Feb16, 30Jul16, 17Nov16 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LAST-Sapelo|LAST]] || 719 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LASTZ-Sapelo|LASTZ]] || 1.02.00, 1.03.73 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LASTZ-Sapelo2|LASTZ]] || 1.04.00 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LDhat-Sapelo|LDhat]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LDhat-Sapelo2|LDhat]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LDhelmet-Sapelo|LDhelmet]] || 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LDhelmet-Sapelo2|LDhelmet]] || 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LDhot-Sapelo|LDhot]] || 0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LEfSe-Sapelo|LEfSe]] || 20160621 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LIBSVM-Sapelo|LIBSVM]] || 3.21 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LS-DYNA-Sapelo2|LS-DYNA]] || 10.123355 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LS-PrePost-Sapelo2|LS-PrePost]] || 4.5 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LTR_retriever-Sapelo|LTR_retriever]] || 20170907 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LTR_retriever-Sapelo2|LTR_retriever]] || 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LUMPY|LUMPY]] || 0.2.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LUMPY-Sapelo2|LUMPY]] || 0.2.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LZO-Sapelo|LZO]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LZO-Sapelo2|LZO]] || 2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[libradtran-Sapelo|libradtran]] || 1.7, 2.0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[librosa-Sapelo|librosa]] || 0.4.3 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[lmod|lmod]] || 5.8 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LoFreq-Sapelo|LoFreq]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LoFreq-Sapelo2|LoFreq]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LocARNA-Sapelo|LocARNA]] || 1.9.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LongRanger-Sapelo2|LongRanger]] || 2.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="M"></span>[[Macs2-Sapelo|MACS2]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Macs2-Sapelo2|MACS2]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MAFFT-Sapelo2|MAFFT]] || 7.273, 7.313 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MAFFT-Teaching|MAFFT]] || 7.130, 7.273, 7.313 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MCL-Sapelo2|MCL]] || 14.137 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MCScanX-transposed-Sapelo |MCScanX-transposed]] || 0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MCScanX-Sapelo |MCScanX]] || 0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MCScanX-Sapelo2 |MCScanX]] || 0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MDEnergy-Sapelo |MDEnergy]] || 2.3 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MEGAHIT-Sapelo2 |MEGAHIT]] || 1.1.1, 1.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MEGAN-Sapelo |MEGAN]] || 6.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MEME-Sapelo|MEME]] || 4.10.2, 4.11.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MEME-Sapelo2|MEME]] || 4.11.0, 5.0.0_1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MET-Sapelo2 |MET]] || 7.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[METIS-Sapelo2|METIS]] || 5.1.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MHAP-Sapelo|MHAP]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MISO-Sapelo|MISO]] || 09132016 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MITE-Hunter-Sapelo2|MITE-Hunter]] || 11-2011 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MKL-Sapelo|MKL]] || 11.1, 11.2 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MOABS-Sapelo|MOABS]] || 1.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MOCAT-Sapelo|MOCAT]] || 1.3r2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MOTHUR-Sapelo|MOTHUR]] || 1.37.5, 1.39.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MP-EST-Sapelo|MP-EST]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MPFR-Sapelo|MPFR]] || 3.1.2 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MPFRC++-Sapelo|MPFRC++]] || 3.6.2 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MREPS-Sapelo2|MREPS]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MSTMap-Sapelo|MSTmap]] || 20170927 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MUMmer-Sapelo|MUMmer]] || 3.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MUMmer-Sapelo2|MUMmer]] || 3.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MUMmer-Teaching|MUMmer]] || 3.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MUSCLE-Sapelo|MUSCLE]] || 3.8.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MUSCLE-Sapelo2|MUSCLE]] || 3.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MVFtools-Sapelo|MVFtools]] || 10112017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MaCS-simulator-Sapelo|MaCS-simulator]] || 0.5d || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MaSuRCA-Sapelo|MaSuRCA]] || 3.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MaSuRCA-Sapelo2|MaSuRCA]] || 3.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mafft-Sapelo|Mafft]] || 7.273-e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mageck-vispr-Sapelo|mageck-vispr]] || 02242017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mageck-Sapelo|mageck]] || 0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Magma-Sapelo|Magma]] || 2.22-9 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mahotast-Sapelo|Mahotas]] || 1.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[mahotas-Sapelo2|mahotas]] || 1.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Make-Sapelo|Make]] || 4.2 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Maker-Sapelo2|Maker]] || 2.31.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Maker-Teaching|Maker]] || 2.31.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MatLab-Sapelo|Matlab]] || R2015aSP1, R2015b, R2016b || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mauve-Sapelo|Mauve]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mauve-Sapelo2|Mauve]] || 2015-02-13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Maven-Sapelo2|Maven]] || 3.5.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MaxBin-Sapelo |MaxBin]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Megahit-Sapelo |Megahit]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Meraculous|Meraculous]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Meraculous-Sapelo2|Meraculous]] || 2.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mercurial-Sapelo |Mercurial]] || 3.9 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mercurial-Sapelo2 |Mercurial]] || 4.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MetaBAT-Sapelo|MetaBAT]] || 20151110 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[metaSort-Sapelo|metaSort]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Metal-Sapelo|Metal]] || 20110325 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Metaphlan2-Sapelo|Metaphlan2]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Metavelvet-Sapelo|Metavelvet]] || 1.2.02 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MetavelvetSL-Sapelo|MetavelvetSL]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MethPipeline-Sapelo|MethPipeline]] || 0.1_120115 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[methylpy-Sapelo|methylpy]] || 08/25/2016 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[methylpy-Sapelo2|methylpy]] || 1.2.9, 1.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MiRDeep2-Sapelo|miRDeep2]] || 0.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MiRDeep2-Sapelo2|miRDeep2]] || 0.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MiRanda-Sapelo|miRanda]] || aug2010 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Migrate-Sapelo|Migrate]] || 3.6.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[minced-Sapelo2|minced]] || 0.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Minimac3-Sapelo|Minimac3]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Minimap2-Sapelo|Minimap2]] || 2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Minimap-Sapelo|Minimap]] || 0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mirdeep-p-Sapelo|mirdeep-p]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mirdeep-p-Sapelo2|mirdeep-p]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[mlehot-Sapelo|mlehot]] || 1.8.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mothur-Sapelo2|Mothur]] || 1.39.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[motif-Sapelo2|motif]] || 2.3.5, 2.3.8 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mplus-Sapelo|Mplus]] || 7.4 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MrBayes-Sapelo|MrBayes]] || 3.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MrBayes-Sapelo2|MrBayes]] || 3.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MrDemuxy-Sapelo|MrDemuxy]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MuTect-Sapelo|MuTect]] || 1.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MultiLoc2-Sapelo|MultiLoc2]] || 26-10-2009 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MultiMappingCounter-Sapelo|MultiMappingCounter]] || 21-09-2017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MultiQC-Sapelo2|MultiQC]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="N"></span>[[NAMD-Sapelo|NAMD]] || 2.11 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NAMD-Sapelo2|NAMD]] || 2.12 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NASM-Sapelo2|NASM]] || 2.11, 2.12, 2.13 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NCBI Blast +-Sapelo|NCBI Blast +]] || 2.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NCBI Blast-Sapelo|NCBI Blast]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NCBIBLAST+-Sapelo|NCBIBLAST+]] || 2.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NCL-Sapelo2|NCL]] || 6.4.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NETCDF-Sapelo|NETCDF]] || 3.6.3, 4.1.3, 4.3.2 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NGS-QC-Toolkit-Sapelo|NGS-QC Toolkit]] || 2.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NGS-Sapelo2|NGS]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NWCHEM-Sapelo|NWCHEM]] || 6.5 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ncbi_tools++-Sapelo|Ncbi_tools++]] || 12.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NeEstimator-Sapelo2|NeEstimator]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Newbler-Sapelo|Newbler]] || 2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NextGenMap-Sapelo2|NextGenMap]] || 0.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ngmlr-Sapelo2|ngmlr]] || 0.2.6-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Ngsutils-Sapelo |Ngsutils]] || 0.5.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[nhPhyML-Sapelo2|nhPhyML]] || 20180515 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Nseg-Sapelo2|Nseg]] || 20180530 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NucleoATAC-Sapelo2|NucleoATAC]] || 0.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NxTrim-Sapelo|NxTrim]] || v0.3.2-alpha || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="O"></span>[[OCaml-Sapelo2|OCaml]] || 4.01.0, 4.02.3 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ORCA-Sapelo |ORCA]] || 3.0.3, 4.0.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ORCA-Sapelo2 |ORCA]] || 3.0.3, 4.0.0.2, 4.0.1.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ORGanelle_ASeMbler-Sapelo2|ORGASM]] || 0.2.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ORGanelle_ASeMbler-Sapelo2|ORGanelle_ASeMbler]] || 0.2.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Oases-Sapelo2|Oases]] || 0.2.08, 0.2.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Octave-Sapelo|Octave]] || 4.0.3 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Oligotyping-Sapelo|Oligotyping]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[OpenBUGS-Sapelo|OpenBUGS]] || 3.2.3 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[OpenCV-Sapelo|OpenCV]] || 2.4.13.3, 3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[opera-Sapelo|opera]] || 2.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[OrthoFiller-Sapelo|OrthoFiller]] || 1.1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[OrthoFinder-Sapelo|OrthoFinder]] || 1.1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[OrthoFinder-Sapelo2|OrthoFinder]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[OrthoFinder-Teaching|OrthoFinder]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="P"></span>[[PAGIT-Sapelo2|PAGIT]] || 1.64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PAML-Sapelo2|PAML]] || 4.9h || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PAML-Teaching|PAML]] || 4.9h || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PANDAseq-Sapelo2 |PANDAseq]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PASA-Sapelo2|PASA]] || 2.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PASTA-Sapelo|PASTA]] || 1.6.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PASTA-Sapelo2|PASTA]] || 1.8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PAUP-Sapelo2|PAUP]] || 4a162_centos64_intel || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PBLAT-Sapelo2|PBLAT]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PBSuite-Sapelo |PBSuite]] || 15.8.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PBSuite-Sapelo2 |PBSuite]] || 15.8.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PCRE-Sapelo2 |PCRE]] || 8.38, 8.39, 8.41 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PEAR-Sapelo|PEAR]] || 0.9.10-src || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PEAR-Sapelo2|PEAR]] || 0.9.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PETSc-Sapelo|PETSc]] || 3.7.6 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PETSc-Sapelo2|PETSc]] || 3.8.4 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PGI Compilers-Sapelo|PGI Compilers]] || 2014 || [[:Category:Compiler|Compiler]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PHASE-Sapelo |PHASE]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PHYLIP-Sapelo2|PHYLIP]] || 3.697 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PICRUSt-Sapelo2 |PICRUSt]] || 1.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PILER-Sapelo2|PILER]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pIRS-Sapelo|pIRS]] || 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PLEK-Sapelo|PLEK]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PLINK-Sapelo2|PLINK]] || 1.07, 1.9b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PLUMED-Sapelo|PLUMED]] || 2.3.3 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PRATT-Sapelo|PRATT]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PRINSEQ-Sapelo|PRINSEQ]] || 0.20.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PRINSEQ-Sapelo2|PRINSEQ]] || 0.20.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[palfinder-Sapelo |palfinder]] || 0.02.04 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Paml-Sapelo|paml]] || 4.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pandas-Sapelo |pandas]] || 0.16.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Pango-Sapelo2 |Pango]] || 1.40.3, 1.41.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ParaFly-Sapelo|ParaFly]] || 0.1.0 || [[:Category:utility|utility]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PartitionFinder-Sapelo2|PartitionFinder]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Paup-Sapelo|Paup]] || 4a147 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pbh5tools-Sapelo2 |pbh5tools]] || 0.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PePr-Sapelo|PePr]] || 1.1.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Peakranger-Sapelo|Peakranger]] || 1.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Perl-Sapelo|Perl]] || 5.24.0-thread || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Perl-Sapelo2|Perl]] || 5.20.3, 5.24.0, 5.24.1, 5.26.0, 5.26.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Perl-Teaching|Perl]] || 5.26.1, 5.26.0, 5.24.1, 5.24.0, 5.20.3 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PhaseTank-Sapelo|PhaseTank]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PhaseTank-Sapelo2|PhaseTank]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[phaser-Sapelo |phaser]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Phobius-Sapelo2|Phobius]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Phred/Phrap/Conced-Sapelo2|Phred/Phrap/Conced]] || Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PhyML-Sapelo|PhyML]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PhyML-Sapelo2|PhyML]] || 3.3.20170530 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PhyloBayes-MPI-Sapelo |PhyloBayes-MPI]] || 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PhyloBayes-MPI-Sapelo2 |PhyloBayes-MPI]] || 20161021 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PhyloGenie-Sapelo|PhyloGenie]] || 11082017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PhyloNet-Sapelo |PhyloNet]] || 3.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[phyluce-Sapelo |phyluce]] || 1.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[phyluce-Sapelo2|Phyluce]] || 1.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[picard-Sapelo |picard]] || 2.1.1, 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[picard-Sapelo2 |picard]] || 2.16.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[picard-Teaching|Picard]] || 2.16.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[picrust-Sapelo|picrust]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pigz-Sapelo|pigz]] || 2.3.4 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pigz-Sapelo2|pigz]] || 2.3.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Pilon-Sapelo|Pilon]] || 1.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Pilon-Sapelo2|Pilon]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pilon-Teaching|Pilon]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Pindel-Sapelo|Pindel]] || 0.2.5b8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Pitchfork-Sapelo|Pitchfork]] || 09272017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[platypus-Sapelo|platypus]] || 0.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[plink-Sapelo|plink]] || 1.07, 1.9-beta3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[poretools-Sapelo|poretools]] || 0.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[portaudio-Sapelo|portaudio]] || 19 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[prep-chem-src-Sapelo|prep-chem-src]] || 1.5 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Primer3-Sapelo |Primer3]] || 2.0.0-alpha || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Primer3-Sapelo2|Primer3]] || 2.3.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ProbABEL-Sapelo|ProbABEL]] || 0.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[prodigal-Sapelo|Prodigal]] || 2.6.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[prodigal-Sapelo2|Prodigal]] || 2.6.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Prokka-Sapelo|Prokka]] || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Prokka-Sapelo2|Prokka]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[proovread-Sapelo |proovread]] || 2.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[proovread-Teaching|Proovread]] || 2.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[protobuf-Sapelo|protobuf]] || 2.4.1, 2.6.1, 3.0.0-beta1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[protobuf-Sapelo2|protobuf]] || 3.3.0, 3.4.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Prottest3-Sapelo|Prottest3]] || 3.4.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pyDNase-Sapelo|pyDNase]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PyPy-Sapelo |PyPy]] || 2.7-5.10.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PyPy-Sapelo2 |PyPy]] || 6.0.0 (2.7.14) || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pyRAD-Sapelo|pyRAD]] || 3.0.64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PyTorch-Sapelo|PyTorch]] || 0.1.9, 0.1.11 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pybedtools-Sapelo|pybedtools]] || 09/22/2016 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pybedtools-Sapelo2|pybedtools]] || 0.7.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pydub-Sapelo|pydub]] || 0.21.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pyfasta-Sapelo|pyfasta]] || 0.5.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Pysam-Sapelo2 |Pysam]] || 0.10.0, 0.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Python-Sapelo |Python]] || 2.6.6, 2.7.8, 2.7.13, 3.5.2, 3.6.4 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Python-Sapelo2 |Python]] || 2.7.12, 2.7.14, 3.4.3, 3.5.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Python-Teaching|Python]] || 3.6.4, 3.5.2, 2.7.14, 2.7.12 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="Q"></span>[[QIIME2-Sapelo2|QIIME2]] || 2018.2, 2018.4, 2018.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[QIIME2-Teaching|QIIME2]] || 2018.4, 2018.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[QUAST-Sapelo|QUAST]] || 4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[QUAST-Sapelo2|QUAST]] || 4.2, 4.6.1, 4.6.3, 5.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Qiime-Sapelo|Qiime]] || 1.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Quake-Sapelo|Quake]] || 0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Qualimap2-Sapelo|Qualimap2]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Qualimap2-Sapelo2|Qualimap2]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Quantum Espresso-Sapelo|Quantum Espresso]] || 5.4.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Quantum Espresso-Sapelo2|Quantum Espresso]] || 6.2.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="R"></span>[[R-Sapelo |R]] || 3.1.2, 3.2.1, 3.2.3, 3.3.1 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[R-Sapelo2 |R]] || 3.4.4 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[R-Teaching|R]] || 3.4.4 || [[:Category:Statistics|Statistics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RAPSearch2-Sapelo |RAPSearch2]] || 2.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RATT-Sapelo|RATT]] || 10052017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RATT-Sapelo2|RATT]] || 20180710 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RAxML-Sapelo |RAxML]] || 8.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RAxML-Sapelo2 |RAxML]] || 8.2.4, 8.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RAxML-Teaching|RAxML]] || 8.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RDPTools-Sapelo|RDPTools]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[READemption-Sapelo|READemption]] || 0.3.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Reapr-Sapelo|REAPR]] || 1.0.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Reapr-Sapelo2|REAPR]] || 1.0.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RECON-Sapelo2|RECON]] || 1.08 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RED-Sapelo|RED]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[REPCLASS-Sapelo|REPCLASS]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[REPET-Sapelo2|REPET]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RES-Scanner-Sapelo|RES-Scanner]] || 20170726 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RGT-Sapelo|RGT]] || 0.11.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RMBlast-Sapelo2|RMBlast]] || 2.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RNAmmer-Sapelo|RNAmmer]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RNAmmer-Sapelo2|RNAmmer]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RNAple-Sapelo|RNAple]] || 0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RSEM-Sapelo |RSEM]] || 1.2.20 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RSEM-Sapelo2 |RSEM]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RSeQC-Sapelo|RSeQC]] || 2.6.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[racon-Sapelo |racon]] || 20161214 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[racon-Sapelo2 |racon]] || 20180406 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Randfold-Sapelo|Randfold]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[randfold-Sapelo2|randfold]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Ray-Sapelo |Ray]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Rcorrector-Sapelo2|Rcorrector]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[repdenovo-Sapelo|repdenovo]] || 02232017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RepeatExplorer-TAREAN-Sapelo|RepeatExplorer-TAREAN]] || 12/13/2016, 01/10/2017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RepeatExplorer-Sapelo|RepeatExplorer]] || 02/2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RepeatMasker-Teaching|RepeatMasker]] || 4.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RepeatModeler-Teaching|RepeatModeler]] || 1.0.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RepeatScout-Sapelo2|RepeatScout]] || 1.05 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[RepeatScout-Teaching|RepeatScout]] || 1.05 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Repeatmasker-Sapelo|Repeatmasker]] || 4.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Repeatmasker-Sapelo2|Repeatmasker]] || 4.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Repeatmodeler-Sapelo|Repeatmodeler]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Repeatmodeler-Sapelo2|Repeatmodeler]] || 1.0.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Revbayes-Sapelo|Revbayes]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Rmpi-Sapelo|Rmpi]] || 0.6-6 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Rmpi-Sapelo2|Rmpi]] || 0.6-6 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Roary-Sapelo |Roary]] || 3.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Roary-Sapelo2 |Roary]] || 3.12.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Roms_tools-Sapelo |Roms_tools]] || 3.1.1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Rosetta-Sapelo |Rosetta]] || 2016.15.58628, 2017.26.59567 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Ruby-Sapelo|Ruby]] || 2.4.2 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[runBNG-Sapelo2|runBNG]] || 1.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="S"></span>[[SAMtools-Sapelo2|SAMtools]] || 0.1.19, 1.3.1, 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SAMtools-Teaching|SAMtools]] || 1.6, 1.3.1, 0.1.19 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SATé-Sapelo|SATé]] || 2.2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SGA-Sapelo|SGA]] || 0.10.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SHORE-Sapelo|SHORE]] || 0.9.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SINE_Scan-Sapelo|SINE_Scan]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SInC-simulator-Sapelo|SInC-simulator]] || 2017.06.06 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SMRTLINK-Sapelo2|SMRTLINK]] || 5.1.0.26412 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SMRTLINK-Teaching|SMRTLINK]] || 5.0.1.9585, 5.1.0.26412 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SMRTanalysis-Sapelo|SMRTanalysis]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SNAP-Zoe-Sapelo2|SNAP-Zoe]] || 20060728 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SNAP-Zoe-Teaching|SNAP-Zoe]] || 20060728 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SNP-ML-Sapelo2|SNP-ML]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SNPhylo-Sapelo|SNPhylo]] || 20160204 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SNPhylo-Sapelo2|SNPhylo]] || 20160204 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SOAPaligner-Sapelo |SOAPaligner]] || 2.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SOAPaligner-Sapelo2 |SOAPaligner]] || 2.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SOAPdenovo2-Sapelo|SOAPdenovo2]] || r240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SOAPdenovo2-Sapelo2|SOAPdenovo2]] || r240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SOAPdenovo2-Teaching|SOAPdenovo2]] || r240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SOP-GPU-Sapelo2|SOP-GPU]] || 20180404 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SPAdes-Sapelo|SPAdes]] || 3.7.0, 3.8.0, 3.9.0, 3.10.0, 3.11.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SPAdes-Sapelo2|SPAdes]] || 3.11.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SPAdes-Teaching|SPAdes]] || 3.11.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SQUID-Sapelo|SQUID]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SRAToolKit-Sapelo |SRAToolKit]] || 2.8.2-1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SRAToolKit-Sapelo2 |SRAToolKit]] || 2.8.2-1, 2.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SSAHA2-Sapelo2 |SSAHA2]] || 2.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SSPACE-Sapelo|SSPACE]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SSPACE-Sapelo2|SSPACE]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[STAMP-Sapelo |STAMP]] || 2.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[STAMPY-Sapelo |STAMPY]] || 1.0.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[STAR-Sapelo|STAR]] || 2.5.3a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[STAR-Sapelo2|STAR]] || 2.5.3a, 2.6.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[STAR-Teaching|STAR]] || 2.5.3a, 2.6.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SUNTANS-Sapelo|SUNTANS]] || 20150923 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SUNTANS-Sapelo2|SUNTANS]] || 20180305 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SUPPA-Sapelo|SUPPA]] || 06122015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SVDetect-Sapelo|SVDetect]] || 0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SVDetect-Sapelo2|SVDetect]] || 0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SVMlight-Sapelo|SVMlight]] || 6.02 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SWIG-Sapelo|SWIG]] || 3.0.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SWIG-Sapelo2|SWIG]] || 3.0.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Sabre|Sabre]] || 02/03/2017 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[|Sage-Sapelo|Sage]] || 7.4, 8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Salmon-Sapelo|Salmon]] || 0.6.1-pre || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Salmon-Sapelo2|Salmon]] || 0.8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[sam2pairwise-Sapelo|sam2pairwise]] || 1.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[samtools-Sapelo|samtools]] || 1.3.1 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[sbt-Sapelo|sbt]] || 0.13.12, 1.0.2 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[sbt-Sapelo2|sbt]] || 1.1.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ScaLAPACK-Sapelo|ScaLAPACK]] || 2.0.2 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[scala-Sapelo|scala]] || 2.10.6, 2.11.7, 2.12.0-RC1, 2.12.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[scala-Sapelo2|scala]] || 2.12.4 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[scalpel-Sapelo|scalpel]] || 0.5.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Scripture-Sapelo|Scripture]] || 3/20/2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Seq-Gen-Sapelo|Seq-Gen]] || 1.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[seqtk-Sapelo|seqtk]] || 1.0-r63-dirty || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[seqtk-Sapelo2|seqtk]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[shapeit-Sapelo|shapeit]] || v2.r837 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[shapeit-Sapelo2|shapeit]] || v2.r904 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ShortStack-Sapelo|ShortStack]] || 3.8.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[sicer-Sapelo|sicer]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[sickle-Sapelo|sickle]] || 1.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SignalP-Sapelo2|SignalP]] || 4.1f || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Silix-Sapelo2|Silix]] || 1.2.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[slda-Sapelo|slda]] || 0.1.4 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[smoke-Sapelo2|smoke]] || 4.5 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[snakemake-Sapelo|snakemake]] || 4.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Sniffles-Sapelo2|Sniffles]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[snpEff-Sapelo2|snpEff]] || 4.3t || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[snpEff-Teaching|SnpEff]] || 4.3t || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SortMeRNA-Sapelo|SortMeRNA]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SortMeRNA-Sapelo2|SortMeRNA]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Spark-Sapelo|Spark]] || 1.6.0, 2.0.1, 2.2.1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SpeedSeq-Sapelo|SpeedSeq]] || 052317 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[stacks-Sapelo|stacks]] || 1.40, 1.44, 2.0beta2, 2.0beta7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Stacks-Sapelo2|Stacks]] || 1.48 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Stacks-Teaching|Stacks]] || 2.0, 1.48 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[StringTie-Sapelo|StringTie]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[StringTie-Sapelo2|StringTie]] || 1.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[StringTie-Teaching|StringTie]] || 1.3.3, 1.3.4d || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[structure-Sapelo|structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Structure-Sapelo2|Structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[subread-Sapelo|subread]] || 1.5.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Subread-Sapelo2|Subread]] || 1.6.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Supernova-Sapelo2|Supernova]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="T"></span>[[T-Coffee-Sapelo|T-Coffee]] || 11.00.8cbe486 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[T-REX-Sapelo|T-REX]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[TASSEL-Sapelo2|TASSEL]] || 5.2.44 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[TEPID-Sapelo|TEPID]] || 0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[TIGRA-Sapelo|TIGRA]] || 0.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[TMHMM-Sapelo2|TMHMM]] || 2.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cDNA_Cupcake-Sapelo|TOFU2]] || 3.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[TPP-Sapelo2|TPP]] || 5.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[tRNAscan-SE-Sapelo|TRNAscan-SE]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[tRNAscan-SE-Sapelo2|TRNAscan-SE]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[TRF-Sapelo|Tandem Repeats Finder]] || 4.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[tassel-Sapelo|tassel]] || 5.2.42 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Tbl2asn-Sapelo2|Tbl2asn]] || 04172018 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[TensorFlow-models-Sapelo2|TensorFlow-models]] || 20180620 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[TensorFlow-Sapelo2|TensorFlow]] || 1.8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[tesseract-Sapelo|tesseract]] || 3.04.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Theano-Sapelo|Theano]] || 0.8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[TopHat-Teaching|TopHat]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[tophat-Sapelo|tophat]] || 2.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Tophat-Sapelo2|Tophat]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[TransDecoder-Sapelo|TransDecoder]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[TransDecoder-Sapelo2|TransDecoder]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Transposome-Sapelo|Transposome]] || 0.09.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[TransposonPSI-Sapelo|TransposonPSI]] || 08222010 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Transrate-Sapelo|Transrate]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[TreeMix-Sapelo|TreeMix]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[TrimGalore-Sapelo|TrimGalore]] || 4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Trim_Galore-Sapelo2|Trim_Galore]] || 0.4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[trimmomatic-Sapelo|trimmomatic]] || 0.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Trimmomatic-Sapelo2|Trimmomatic]] || 0.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Trimmomatic-Teaching|Trimmomatic]] || 0.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Trinity-Sapelo|Trinity]] || 2.06 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Trinity-Sapelo2|Trinity]] || r20140717, 2.5.1, 2.6.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Trinity-Teaching|Trinity]] || 2.6.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Trinotate-Sapelo|Trinotate]] || 3.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Trinotate-Sapelo2|Trinotate]] || 3.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="U"></span>[[UCHIME-Sapelo|UCHIME]] || 4.2.40 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[UCSC-Sapelo|UCSC]] || 06-17-2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[UPP-Sapelo2|UPP]] || 3.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ucsc-Sapelo2|ucsc]] || 359 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[usearch-Sapelo|usearch]] || 10.0.240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="V"></span>[[VCF-kit-Sapelo2|VCF-kit]] || 0.1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[VCFtools-Sapelo2|VCFtools]] || 0.1.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[VCFtools-Teaching|VCFtools]] || 0.1.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[VSEARCH-Sapelo2|VSEARCH]] || 2.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[VarScan-Sapelo2|VarScan]] || 2.4.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[vcf2diploid-Sapelo2|vcf2diploid]] || 0.2.6a || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[vcf2phylip-Sapelo2|vcf2phylip]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Vcflib-Sapelo|vcflib]] || 1.0.0-rc1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[vcflib-Sapelo2|vcflib]] || 20180410 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[vcftools-Sapelo|vcftools]] || 0.1.12b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[velvet-Sapelo|velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Velvet-Sapelo2|Velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Velvet-Teaching|Velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ViennaRNA-Sapelo|ViennaRNA]] || 2.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ViennaRNA-Sapelo2|ViennaRNA]] || 2.4.3, 2.4.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Viromescan-Sapelo|viromescan]] || 05292017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Vmatch-Sapelo2|Vmatch]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[voxnet-Sapelo|voxnet]] || 0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[vsearch-Sapelo|vsearch]] || 1.10.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="W"></span>[[WPS-Sapelo|WPS]] || 3.6, 3.6.1, 3.7, 3.8 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[WPS-Sapelo2|WPS]] || 3.8 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[WRF-Chem-Sapelo|WRF-Chem]] || 3.6.1, 3.8 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[WRF-Chem-Sapelo2|WRF-Chem]] || 3.6.1, 3.8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[WRF-Fire-Sapelo2|WRF-Fire]] || 20170221 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[WRF-Sapelo|WRF]] || 3.6, 3.6.1, 3.7, 3.8 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[WRF-Sapelo2|WRF]] || 3.6.1, 3.8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[WU Blast-Sapelo|WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[WU Blast-Sapelo2|WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[wgs-Sapelo|wgs]] || 8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[whatshap-Sapelo|whatshap]] || 0.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[WinHap-Sapelo|WinHap]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="X"></span>[[RDPTools-Sapelo|Xander_assembler]] || 7/12/2016 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[xforms-Sapelo2|xforms]] || 1.2.4 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="Y"></span>[[YAHA-Sapelo|YAHA]] || 0.1.83 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[YASRA-Sapelo|YASRA]] || 2.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[YASRA-Sapelo2|YASRA]] || 2.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[yt-Sapelo|yt]] || 3.2.3 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="Z"></span>[[Zbar-Sapelo|Zbar]] || 0.10 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
| [[zlib-Sapelo|zlib]] || 1.2.5, 1.2.8 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Zorro]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
<!--LIST END-->
<!--LIST END-->
|-
|}
|}
[[#top|Back To Top]] [[File:Up20.png|20px|link=#top]]
[[#top|Back To Top]] [[File:Up20.png|20px|link=#top]]
[[Category:Zcluster]][[Category:Sapelo]]
 
[[Category:Sapelo2old]][[Category:Sapelo]][[Category:Teaching]][[Category:Software]]

Latest revision as of 11:27, 26 October 2020

Below is a partial list of software packages installed on Sapelo, Sapelo2, Teaching (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2/Teaching, along with a short description, please run the following command on Sapelo2/Teaching: 

module spider

You can also use the command above to search for a specific application. For more information, please see Lmod.

Installed Software List

Last updated 2020-10-26. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name Version Category Cluster Top
4p 1.0 Bioinformatics Sapelo Up20.png
4p 1.0 Bioinformatics Sapelo2 Up20.png
ABySS 2.0.2 Bioinformatics Sapelo Up20.png
ABySS 1.9.0, 2.0.2, 2.1.0 Bioinformatics Sapelo2 Up20.png
ADMIXTURE 1.3.0 Bioinformatics Sapelo2 Up20.png
AFNI 17.3.05 Other Sapelo2 Up20.png
AGE 0.4 Bioinformatics Sapelo Up20.png
AMBER 14 Chemistry Sapelo Up20.png
AMBER 14 Chemistry Sapelo2 Up20.png
AMOS 3.1.0 Bioinformatics Sapelo2 Up20.png
ANI 2.0 Bioinformatics Sapelo Up20.png
ANNOgesic 0.6.17 Bioinformatics Sapelo Up20.png
ANSYS 16.2 Engineering Sapelo Up20.png
ARC 1.1.4-beta Bioinformatics Sapelo Up20.png
ART 20160605 Bioinformatics Sapelo Up20.png
ART 20160605 Bioinformatics Sapelo2 Up20.png
ASTRAL 5.6.1 Bioinformatics Sapelo2 Up20.png
AStalavista 3.2 Bioinformatics Sapelo Up20.png
AUGUSTUS 3.2.3 Bioinformatics Sapelo2 Up20.png
AUGUSTUS 3.2.3 Bioinformatics Teaching Up20.png
aeneas 1.7.3 Other Sapelo Up20.png
AlignGraph 20180709 Bioinformatics Sapelo2 Up20.png
AlleleSeq_pipeline 1.2a Chemistry Sapelo2 Up20.png
Allmaps 0.6.6 Bioinformatics Sapelo Up20.png
amos 3.1.0 Bioinformatics Sapelo Up20.png
Anaconda2 4.2.0, 4.3.0, 4.4.0 Programming Sapelo Up20.png
Anaconda2 5.0.1 Programming Sapelo2 Up20.png
Anaconda3 4.2.0, 4.3.0, 5.0.0 Programming Sapelo Up20.png
Anaconda3 5.0.1 Programming Sapelo2 Up20.png
Anaconda 2.2.0, 2.5.0, 3-2.2.0, 2-4.1.1 Programming Sapelo Up20.png
annovar 2017Jul16 Bioinformatics sapelo2 Up20.png
apache-ant 1.9.6 Other Sapelo Up20.png
Aragorn 1.2.38 Bioinformatics Sapelo2 Up20.png
Arlequin 3.5.2.2 Bioinformatics Sapelo2 Up20.png
Artemis 17.0.1 Bioinformatics Sapelo2 Up20.png
Artemis 17.0.1 Bioinformatics Teaching Up20.png
augustus 3.2.3 Bioinformatics Sapelo Up20.png
BAGEL 2016.12.14, 2017.02.13 Chemistry Sapelo Up20.png
BBMap 35.82 Bioinformatics Sapelo Up20.png
BBMap 37.67 Bioinformatics Sapelo2 Up20.png
BCFtools 1.3.1, 1.6, 1.8 Bioinformatics Sapelo2 Up20.png
BCFtools 1.3.1, 1.6, 1.8 Bioinformatics Teaching Up20.png
BEAST 2.4.1 Bioinformatics Sapelo Up20.png
BEDOPS 2.4.30 Bioinformatics Sapelo2 Up20.png
BEDTools 2.24.0, 2.25.0 2.26.0 Bioinformatics Sapelo Up20.png
BEDTools 2.26.0 Bioinformatics Sapelo2 Up20.png
BEDTools 2.26.0 Bioinformatics Teaching Up20.png
BEDops 2.4.14 Bioinformatics Sapelo Up20.png
BEST 2.3.1 Bioinformatics Sapelo Up20.png
BLAST+ 2.6.0 Bioinformatics Teaching Up20.png
BLAST 2.2.26 Bioinformatics Sapelo2 Up20.png
BLAST 2.2.26 Bioinformatics Teaching Up20.png
BLAT 3.4, 3.5 Bioinformatics Sapelo2 Up20.png
BP&P 4.0 Bioinformatics Sapelo Up20.png
BS Seeker2 2.1.1 Bioinformatics Sapelo Up20.png
BUSCO 3.0.2 Bioinformatics Sapelo Up20.png
BWA 0.7.15, 0.7.17 Bioinformatics Sapelo2 Up20.png
BWA 0.7.17, 0.7.15 Bioinformatics Teaching Up20.png
BaitsTools 1.0 Bioinformatics Sapelo Up20.png
bam-readcount 0.8.0 Bioinformatics Sapelo Up20.png
BamTools 2.4.1 Bioinformatics Sapelo2 Up20.png
Bamtools 2.4.0 Bioinformatics Sapelo Up20.png
Barrnap 0.9 Bioinformatics Sapelo2 Up20.png
basespace-cli 0.8.10 Bioinformatics Sapelo Up20.png
BayesAss 3.0.4 Bioinformatics Sapelo2 Up20.png
Bazel 0.4.5 Other Sapelo Up20.png
Bazel 0.8.1, 0.11.1 Other Sapelo2 Up20.png
bcftools 1.6 Bioinformatics Sapelo Up20.png
bcl2fastq 2.17.1.14 Bioinformatics Sapelo Up20.png
bcl2fastq 2.20.0 Bioinformatics Sapelo2 Up20.png
Beast 2.4.8pre Bioinformatics Sapelo2 Up20.png
BiBench 0.2 Bioinformatics Sapelo Up20.png
BioPerl 1.6.923 Bioinformatics Sapelo Up20.png
BioPerl 1.7.1 Bioinformatics Sapelo2 Up20.png
BioPerl 1.7.1 Bioinformatics Teaching Up20.png
BioPython 1.66 Bioinformatics Sapelo Up20.png
BioPython 1.68 Bioinformatics Sapelo2 Up20.png
bioawk 1.0 Bioinformatics Sapelo Up20.png
BionanoSolve 3.2.1-04122018 Bioinformatics Sapelo2 Up20.png
Biopython 1.68 Bioinformatics Teaching Up20.png
Bismark 0.16.3 Bioinformatics Sapelo Up20.png
Bison 2.7, 3.0.2, 3.0.4 Other Sapelo Up20.png
Blat 36 Bioinformatics Sapelo Up20.png
Boost 1.47.0, 1.57.0, 1.59.0 Library Sapelo Up20.png
Boost 1.54.0, 1.61.0, 1.63.0, 1.65.1 Library Sapelo2 Up20.png
bowtie2 2.2.4 Bioinformatics Sapelo Up20.png
bowtie2 2.2.3, 2.3.3, 2.3.4.1 Bioinformatics Sapelo2 Up20.png
Bowtie2 2.2.3, 2.3.3, 2.3.4.1 Bioinformatics Teaching Up20.png
bowtie 1.1.1 Bioinformatics Sapelo Up20.png
Bowtie 1.2.2 Bioinformatics Sapelo2 Up20.png
braker 2.0.5 Bioinformatics Sapelo2 Up20.png
BreakDancer 1.4.5-foss-2016b Bioinformatics Sapelo2 Up20.png
breakdancer 1.1.2_2013_03_08 Bioinformatics Sapelo Up20.png
Burrows-Wheeler Aligner (BWA) 0.7.10, 0.7.15 Bioinformatics Sapelo Up20.png
busco 3.0.2, 2.0 Bioinformatics Sapelo2 Up20.png
CAP-miRSeq 05/20184 Bioinformatics Sapelo2 Up20.png
CAP3 03092015 Bioinformatics Sapelo2 Up20.png
CD-HIT 4.6.8 Bioinformatics Sapelo2 Up20.png
CDNA_Cupcake 3.9 Bioinformatics Sapelo Up20.png
CENSOR 4.2.29 Bioinformatics Sapelo2 Up20.png
CFOUR 1.2, 2.00-beta Chemistry Sapelo Up20.png
CGAT 0.2.4 Bioinformatics Sapelo Up20.png
CGmapTools 0.0.3b Bioinformatics Sapelo Up20.png
CIRCexplorer2 2.2.3 Bioinformatics Sapelo Up20.png
CMake 3.0.0, 3.4.3, 3.5.2, 3.6.1, 3.6.2, 3.7.2, 3.8.0, 3.9.1, 3.9.5, 3.10.2 Other Sapelo2 Up20.png
CNVnator 0.3.3 Bioinformatics Sapelo Up20.png
CNVnator 0.3.3 Bioinformatics Sapelo2 Up20.png
CONSEL 0.20 Bioinformatics Sapelo Up20.png
CPLEX 12.6.3 Engineering Sapelo Up20.png
CPLEX 12.6.3 Engineering Sapelo2 Up20.png
CUDA 5.0.35, 6.5.14, 7.5.18, 8.0.61 Programming Sapelo Up20.png
CUDA 7.0.28, 7.5.18, 8.0.61, 8.0.61_375.26-GCC-5.4.0-2.26, 9.0.176 Programming Sapelo2 Up20.png
cURL 7.49.1 Other Sapelo2 Up20.png
Caffe 12.04.2015 Other Sapelo Up20.png
Caffe 04082018 Other Sapelo2 Up20.png
Cairo 1.10.0 Bioinformatics Sapelo Up20.png
cairo 1.14.6, 1.14.10, 1.14.12 Bioinformatics Sapelo2 Up20.png
canu 1.4 Bioinformatics Sapelo Up20.png
canu 1.7 Bioinformatics Sapelo2 Up20.png
Canu 1.4, 1.5, 1.6, 1.7 Bioinformatics Teaching Up20.png
cap3 03/09/2015 Bioinformatics Sapelo Up20.png
cdhit 4.6.7 Bioinformatics Sapelo Up20.png
CellProfiler 2.2.0 Bioinformatics Sapelo Up20.png
censor 4.2.29 Bioinformatics Sapelo Up20.png
Centrifuge 2.3.2 Bioinformatics Sapelo Up20.png
Check 0.10.0 Programming Sapelo Up20.png
CheckM 1.0.5 Bioinformatics Sapelo Up20.png
Chimera 1.13 Bioinformatics Sapelo2 Up20.png
Chromosomer 0.1.4a Bioinformatics Sapelo Up20.png
circlator 1.4.1 Bioinformatics Sapelo Up20.png
circlator 1.5.3 Bioinformatics Sapelo2 Up20.png
circos 0.69 Bioinformatics Sapelo Up20.png
Circos 0.69-6 Bioinformatics Sapelo2 Up20.png
cisa 20140304 Bioinformatics Sapelo Up20.png
Cleaveland4 4.4 Bioinformatics Sapelo Up20.png
Cleaveland4 4.4 Bioinformatics Sapelo2 Up20.png
Clustal-Omega 1.2.4 Bioinformatics Sapelo2 Up20.png
ClustalW2 2.1 Bioinformatics Sapelo2 Up20.png
ClustalW 1.83 Bioinformatics Sapelo Up20.png
clusteringConsensus 1.02 Bioinformatics Sapelo Up20.png
cmake 2.8.12.2, 3.0.2, 3.7.2, 3.9.3 Other Sapelo Up20.png
cnv-seq 03132017 Bioinformatics Sapelo Up20.png
Conspred v1.32 Bioinformatics Sapelo Up20.png
cortex_var 1.0.5.21 Bioinformatics Sapelo Up20.png
Croco_tools 1.0 Other Sapelo Up20.png
CrossMap 0.2.5 Bioinformatics Sapelo Up20.png
cufflinks 2.2.1 Bioinformatics Sapelo Up20.png
Cufflinks 2.2.1 Bioinformatics Sapelo2 Up20.png
Cufflinks 2.2.1 Bioinformatics Teaching Up20.png
Cutadapt 1.14 Bioinformatics Sapelo Up20.png
cutadapt 1.9.1, 1.16 Bioinformatics Sapelo2 Up20.png
cv2 3.3.0.10 Other Sapelo Up20.png
CytoScape 3.3.0 Bioinformatics Sapelo Up20.png
DBG2OLC 20170208 Bioinformatics Sapelo2 Up20.png
DBG2OLC 20170208 Bioinformatics Teaching Up20.png
DDSCAT 7.3.2 Chemistry Sapelo2 Up20.png
DELLY 0.7.7 Bioinformatics Sapelo Up20.png
DIAMOND 0.8.36 Bioinformatics Sapelo Up20.png
DIAMOND 1.0 Bioinformatics Sapelo2 Up20.png
DISCOVARdenovo 52488 Bioinformatics Sapelo2 Up20.png
DLCpar 1.0 Bioinformatics Sapelo Up20.png
DLCpar 1.0 Bioinformatics Sapelo2 Up20.png
Danpos2 2.2.2 Bioinformatics Sapelo Up20.png
datamash 1.0.7 Other Sapelo Up20.png
ddocent 2.2.16 Bioinformatics Sapelo Up20.png
DeFCoM 1.0.1 Bioinformatics Sapelo Up20.png
DeconSeq 0.4.3 Bioinformatics Sapelo Up20.png
deepTools 3.0.2 Bioinformatics Sapelo2 Up20.png
deepnet 20151013 Other Sapelo Up20.png
deeptools 2.3.1 Bioinformatics Sapelo Up20.png
DendroPy 4.3.0 Bioinformatics Sapelo2 Up20.png
dendropy 3.12.0 Bioinformatics Sapelo Up20.png
depict 140721 Bioinformatics Sapelo Up20.png
detect-NAHR 2015.09.16 Bioinformatics Sapelo Up20.png
Doxygen 1.8.7, 1.8.11, 1.8.13 Other Sapelo2 Up20.png
EIGENSOFT 6.1.4 Bioinformatics Sapelo2 Up20.png
EMBOSS 6.5.7 Bioinformatics Sapelo Up20.png
EMBOSS 6.6.0 Bioinformatics Sapelo2 Up20.png
EMBOSS 6.6.0 Bioinformatics Teaching Up20.png
EMMAX beta beta Bioinformatics Sapelo2 Up20.png
EPIG-Seq v01 Bioinformatics Sapelo Up20.png
ESMF 7.0.2 Other Sapelo2 Up20.png
emirge 0.61.1 Bioinformatics Sapelo Up20.png
espeak 1.48.04 Other Sapelo Up20.png
ExaML 3.0.11 Bioinformatics Sapelo Up20.png
exabayes 1.4.1 Bioinformatics Sapelo Up20.png
exonerate 2.2.0 Bioinformatics Sapelo Up20.png
Exonerate 2.4.0 Bioinformatics Sapelo2 Up20.png
Exonerate 2.4.0 Bioinformatics Teaching Up20.png
Expander 7.11 Bioinformatics Sapelo Up20.png
FALCON 0.4.0 Bioinformatics Sapelo Up20.png
FALCON 02282018_unzip Bioinformatics Sapelo2 Up20.png
FASTA 36.3.5e Bioinformatics Sapelo2 Up20.png
FASTQSim 3.0 Bioinformatics Sapelo Up20.png
FASTX-Toolkit 0.0.14 Bioinformatics Sapelo2 Up20.png
FFTW 2.1.5, 3.3.4 Math Library Sapelo Up20.png
FFTW 3.3.4, 3.3.6, 3.3.7 Math Library Sapelo2 Up20.png
FFmpeg 2.8.2 Other Sapelo Up20.png
FFmpeg 3.1.3, 3.4.1 Other Sapelo2 Up20.png
FIAT 1.6.0 Other Sapelo2 Up20.png
FLASH 1.2.11 Bioinformatics Sapelo Up20.png
FLASH 1.2.11 Bioinformatics Sapelo2 Up20.png
FLTK 1.3.4 Other Sapelo2 Up20.png
Fast-Plast 1.2.6 Bioinformatics Sapelo2 Up20.png
FastME 2.1.5 Bioinformatics Sapelo Up20.png
FastME 2.1.5 Bioinformatics Sapelo2 Up20.png
FastPlast 1.2.6 Bioinformatics Sapelo Up20.png
FastQC 0.11.4 Bioinformatics Sapelo Up20.png
FastQC 0.11.5 Bioinformatics Sapelo2 Up20.png
FastSTRUCTURE 1.0 Bioinformatics Sapelo2 Up20.png
fastStructure 1.0 Bioinformatics Sapelo Up20.png
FastTree 2.1.10 Bioinformatics Sapelo2 Up20.png
FastX 0.0.13.2, 0.0.14 Bioinformatics Sapelo Up20.png
fastphase 1.4.0 Bioinformatics Sapelo Up20.png
Find_Cns 2016/07/21 Bioinformatics Sapelo Up20.png
fineRADstructure 2016/12/09 Bioinformatics Sapelo Up20.png
FineSTRUCTURE 2.0.7 Bioinformatics Sapelo Up20.png
fineSTRUCTURE 2.1.3 Bioinformatics Sapelo2 Up20.png
FoX 4.1.2 Library Sapelo2 Up20.png
FreeSurfer 6.0.0 Medical-Informatics Sapelo Up20.png
Freebayes 1.0.1 Bioinformatics Sapelo Up20.png
Freebayes 1.2.0 Bioinformatics Sapelo2 Up20.png
FriBidi 1.0.1 Library Sapelo2 Up20.png
GAG 2.0.1 Bioinformatics Sapelo2 Up20.png
GAG 2.0.1 Bioinformatics Teaching Up20.png
GAMESS 5Dec2014 Chemistry Sapelo Up20.png
GAMESS 14Feb2018 Chemistry Sapelo2 Up20.png
GAP 4.8.7 Other Sapelo Up20.png
GAPIT 20180524 Bioinformatics Sapelo2 Up20.png
GATK 3.4-0, 3.8-0, 4.0.3.0 Bioinformatics Sapelo2 Up20.png
GATK 3.4-0, 3.8-0 Bioinformatics Teaching Up20.png
GAUSSIAN 09 Chemistry Sapelo Up20.png
GAUSSIAN 09 Chemistry Sapelo2 Up20.png
GAWN 0.3.2 Bioinformatics Sapelo Up20.png
GBlocks 0.91b Bioinformatics Sapelo2 Up20.png
GCTA 1.26.0 Bioinformatics Sapelo Up20.png
GCTA 1.26.0 Bioinformatics Sapelo2 Up20.png
GD 2.66 Bioinformatics Sapelo2 Up20.png
GDAL 2.1.0, 2.2.2 Library Sapelo2 Up20.png
GDC-client 1.0.1 Bioinformatics Sapelo Up20.png
GEM-library 20130406-045632 Bioinformatics Sapelo2 Up20.png
GEM 2.5 Bioinformatics Sapelo Up20.png
GEOS 3.6.2 Library Sapelo2 Up20.png
GFlow 0.1.7 Library Sapelo2 Up20.png
GKIN 1.1 Bioinformatics Sapelo Up20.png
GLPK 4.63, 4.65 Programming Sapelo2 Up20.png
GLib 2.49.5, 2.53.5, 2.54.3 Library Sapelo2 Up20.png
GMA 0.1.5 Bioinformatics Sapelo Up20.png
GMAP-GSNAP 2016-11-07 Bioinformatics Sapelo2 Up20.png
GMATA 2017-01-14 Bioinformatics Sapelo Up20.png
GMP 4.3.1, 6.0.0 Library Sapelo Up20.png
GMP 4.3.2, 6.1.1, 6.1.2 Library Sapelo2 Up20.png
GMPFRXX 20081116 Library Sapelo Up20.png
GNU Compilers 4.4.7, 4.7.4, 5.3.0 Compiler Sapelo Up20.png
GObject-Introspection 1.49.1, 1.54.1 Other Sapelo2 Up20.png
GSL 1.16 Math Library Sapelo Up20.png
GSL 1.16, 2.1, 2.3. 2.4 Math Library Sapelo2 Up20.png
GStreamer 1.14.0 Bioinformatics Sapelo2 Up20.png
GTK+ 2.24.31 Library Sapelo2 Up20.png
GTS 0.7.6 Library Sapelo2 Up20.png
gam-ngs 1.1b Bioinformatics Sapelo Up20.png
GapFiller 2.1.1 Bioinformatics Sapelo Up20.png
GapFiller 2.1.1 Bioinformatics Sapelo2 Up20.png
GapFiller 2.1.1 Bioinformatics Teaching Up20.png
gat 1.2 Bioinformatics Sapelo Up20.png
gatk 3.6 Bioinformatics Sapelo Up20.png
GaussView 5 Chemistry Sapelo Up20.png
Gblocks 0.91b Bioinformatics Sapelo Up20.png
gd 2.2.4 Bioinformatics Sapelo Up20.png
gdal 2.1.0 Library Sapelo Up20.png
gdc-client 1.3.0 Bioinformatics Sapelo2 Up20.png
Gdk-pixbuf 2.36.0 Library Sapelo2 Up20.png
Gemini 0.20.0 Bioinformatics Sapelo Up20.png
GeneMark-ES 4.33 Bioinformatics Sapelo Up20.png
GeneMark.hmm.eukaryotic 4.30 Bioinformatics Sapelo2 Up20.png
GeneMarkES 4.33 Bioinformatics Sapelo2 Up20.png
GeneMarkES 4.33 Bioinformatics Teaching Up20.png
GeneMarkS-T 4.33 Bioinformatics Sapelo2 Up20.png
GeneMarkS 4.30 Bioinformatics Sapelo2 Up20.png
Gengetopt 2.22 Other Sapelo Up20.png
Genome Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 Bioinformatics Sapelo2 Up20.png
GenomeTools 1.5.9 Bioinformatics Sapelo Up20.png
GenomeTools 1.5.9 Bioinformatics Sapelo2 Up20.png
GenomicConsensus 3.0.2 Bioinformatics Sapelo Up20.png
gensim 2.3.0 Library Sapelo Up20.png
geos 3.5.0 Library Sapelo Up20.png
Gerud3 12202017 Bioinformatics Sapelo Up20.png
gff3ToGenePred 1.0 Bioinformatics Sapelo Up20.png
gffcompare 0.10.4 Bioinformatics Sapelo Up20.png
Gffcompare 0.10.4 Bioinformatics Sapelo2 Up20.png
gffread 0.9.12 Bioinformatics Sapelo2 Up20.png
Ghostscript 9.20, 9.22 Other Sapelo2 Up20.png
git 1.7.1, 2.7.0 Other Sapelo Up20.png
gmap-gsnap 2017-01-14 Bioinformatics Sapelo Up20.png
gnuplot 4.2.6 Bioinformatics Sapelo Up20.png
gnuplot 5.0.5 Bioinformatics Sapelo2 Up20.png
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grace 5.1.25 Graphics Sapelo Up20.png
grace 5.1.25 Graphics Sapelo2 Up20.png
GraftM 0.10.1 Bioinformatics Sapelo Up20.png
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Graphviz 2.40.1 Other Sapelo2 Up20.png
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HH-suite 3.0 Bioinformatics Sapelo Up20.png
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IDBA 1.1.2 Bioinformatics Sapelo Up20.png
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IGV 2.4.4 Bioinformatics Sapelo2 Up20.png
IGVTools 2.3.81 Bioinformatics Sapelo Up20.png
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Jellyfish 2.2.6 Bioinformatics Sapelo2 Up20.png
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Kaiju 1.6.2 Bioinformatics Sapelo2 Up20.png
kallisto 0.42.5 Bioinformatics Sapelo Up20.png
kallisto 0.43.1 Bioinformatics Sapelo2 Up20.png
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mirdeep-p 1.3 Bioinformatics Sapelo2 Up20.png
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PBSuite 15.8.24 Bioinformatics Sapelo2 Up20.png
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PRINSEQ 0.20.4 Bioinformatics Sapelo2 Up20.png
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PhaseTank 1.0 Bioinformatics Sapelo2 Up20.png
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phyluce 1.5.0 Bioinformatics Sapelo Up20.png
Phyluce 1.6.1 Bioinformatics Sapelo2 Up20.png
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picard 2.16.0 Bioinformatics Sapelo2 Up20.png
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picrust 1.1.0 Bioinformatics Sapelo Up20.png
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Pilon 1.22 Bioinformatics Sapelo2 Up20.png
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Pindel 0.2.5b8 Bioinformatics Sapelo Up20.png
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platypus 0.8.1 Bioinformatics Sapelo Up20.png
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prep-chem-src 1.5 Other Sapelo Up20.png
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Primer3 2.3.7 Bioinformatics Sapelo2 Up20.png
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Prodigal 2.6.3 Bioinformatics Sapelo2 Up20.png
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Prokka 1.13 Bioinformatics Sapelo2 Up20.png
proovread 2.12 Bioinformatics Sapelo Up20.png
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pyDNase 0.2.5 Bioinformatics Sapelo Up20.png
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pybedtools 0.7.10 Bioinformatics Sapelo2 Up20.png
pydub 0.21.0 Other Sapelo Up20.png
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QIIME2 2018.4, 2018.6 Bioinformatics Teaching Up20.png
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Qiime 1.9.1 Bioinformatics Sapelo Up20.png
Quake 0.3 Bioinformatics Sapelo Up20.png
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RATT 20180710 Bioinformatics Sapelo2 Up20.png
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RDPTools 2.2.0 Bioinformatics Sapelo Up20.png
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REAPR 1.0.18 Bioinformatics Sapelo Up20.png
REAPR 1.0.18 Bioinformatics Sapelo2 Up20.png
RECON 1.08 Bioinformatics Sapelo2 Up20.png
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RES-Scanner 20170726 Bioinformatics Sapelo Up20.png
RGT 0.11.2 Bioinformatics Sapelo Up20.png
RMBlast 2.6.0 Bioinformatics Sapelo2 Up20.png
RNAmmer 1.2 Bioinformatics Sapelo Up20.png
RNAmmer 1.2 Bioinformatics Sapelo2 Up20.png
RNAple 0.2 Bioinformatics Sapelo Up20.png
RSEM 1.2.20 Bioinformatics Sapelo Up20.png
RSEM 1.3.0 Bioinformatics Sapelo2 Up20.png
RSeQC 2.6.4 Bioinformatics Sapelo Up20.png
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racon 20180406 Bioinformatics Sapelo2 Up20.png
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randfold 2.0.1 Bioinformatics Sapelo2 Up20.png
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Roary 3.12.0 Bioinformatics Sapelo2 Up20.png
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SNPhylo 20160204 Bioinformatics Sapelo2 Up20.png
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SOAPaligner 2.21 Bioinformatics Sapelo2 Up20.png
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SOAPdenovo2 r240 Bioinformatics Sapelo2 Up20.png
SOAPdenovo2 r240 Bioinformatics Teaching Up20.png
SOP-GPU 20180404 Bioinformatics Sapelo2 Up20.png
SPAdes 3.7.0, 3.8.0, 3.9.0, 3.10.0, 3.11.0 Bioinformatics Sapelo Up20.png
SPAdes 3.11.1 Bioinformatics Sapelo2 Up20.png
SPAdes 3.11.1 Bioinformatics Teaching Up20.png
SQUID 1.1 Bioinformatics Sapelo Up20.png
SRAToolKit 2.8.2-1 Bioinformatics Sapelo Up20.png
SRAToolKit 2.8.2-1, 2.9.1 Bioinformatics Sapelo2 Up20.png
SSAHA2 2.5.5 Bioinformatics Sapelo2 Up20.png
SSPACE 2.1.1 Bioinformatics Sapelo Up20.png
SSPACE 2.1.1 Bioinformatics Sapelo2 Up20.png
STAMP 2.1.3 Bioinformatics Sapelo Up20.png
STAMPY 1.0.31 Bioinformatics Sapelo Up20.png
STAR 2.5.3a Bioinformatics Sapelo Up20.png
STAR 2.5.3a, 2.6.0c Bioinformatics Sapelo2 Up20.png
STAR 2.5.3a, 2.6.0c Bioinformatics Teaching Up20.png
SUNTANS 20150923 Other Sapelo Up20.png
SUNTANS 20180305 Other Sapelo2 Up20.png
SUPPA 06122015 Bioinformatics Sapelo Up20.png
SVDetect 0.7 Bioinformatics Sapelo Up20.png
SVDetect 0.7 Bioinformatics Sapelo2 Up20.png
SVMlight 6.02 Other Sapelo Up20.png
SWIG 3.0.12 Bioinformatics Sapelo Up20.png
SWIG 3.0.12 Bioinformatics Sapelo2 Up20.png
Sabre 02/03/2017 Other Sapelo Up20.png
[[|Sage-Sapelo|Sage]] 7.4, 8.0 Other Sapelo Up20.png
Salmon 0.6.1-pre Bioinformatics Sapelo Up20.png
Salmon 0.8.2 Bioinformatics Sapelo2 Up20.png
sam2pairwise 1.0.0 Bioinformatics Sapelo Up20.png
samtools 1.3.1 1.6 Bioinformatics Sapelo Up20.png
sbt 0.13.12, 1.0.2 Programming Sapelo Up20.png
sbt 1.1.1 Programming Sapelo2 Up20.png
ScaLAPACK 2.0.2 Math Library Sapelo Up20.png
scala 2.10.6, 2.11.7, 2.12.0-RC1, 2.12.1 Programming Sapelo Up20.png
scala 2.12.4 Programming Sapelo2 Up20.png
scalpel 0.5.3 Bioinformatics Sapelo Up20.png
Scripture 3/20/2015 Bioinformatics Sapelo Up20.png
Seq-Gen 1.3.3 Bioinformatics Sapelo Up20.png
seqtk 1.0-r63-dirty Bioinformatics Sapelo Up20.png
seqtk 1.2 Bioinformatics Sapelo2 Up20.png
shapeit v2.r837 Bioinformatics Sapelo Up20.png
shapeit v2.r904 Bioinformatics Sapelo2 Up20.png
ShortStack 3.8.5 Bioinformatics Sapelo Up20.png
sicer 1.1 Bioinformatics Sapelo Up20.png
sickle 1.33 Bioinformatics Sapelo Up20.png
SignalP 4.1f Bioinformatics Sapelo2 Up20.png
Silix 1.2.9 Bioinformatics Sapelo2 Up20.png
slda 0.1.4 Other Sapelo Up20.png
smoke 4.5 Other Sapelo2 Up20.png
snakemake 4.0.0 Bioinformatics Sapelo Up20.png
Sniffles 1.0.8 Bioinformatics Sapelo2 Up20.png
snpEff 4.3t Bioinformatics Sapelo2 Up20.png
SnpEff 4.3t Bioinformatics Teaching Up20.png
SortMeRNA 2.1 Bioinformatics Sapelo Up20.png
SortMeRNA 2.1 Bioinformatics Sapelo2 Up20.png
Spark 1.6.0, 2.0.1, 2.2.1 Other Sapelo Up20.png
SpeedSeq 052317 Bioinformatics Sapelo Up20.png
stacks 1.40, 1.44, 2.0beta2, 2.0beta7 Bioinformatics Sapelo Up20.png
Stacks 1.48 Bioinformatics Sapelo2 Up20.png
Stacks 2.0, 1.48 Bioinformatics Teaching Up20.png
StringTie 1.2.0 Bioinformatics Sapelo Up20.png
StringTie 1.3.3 Bioinformatics Sapelo2 Up20.png
StringTie 1.3.3, 1.3.4d Bioinformatics Teaching Up20.png
structure 2.3.4 Bioinformatics Sapelo Up20.png
Structure 2.3.4 Bioinformatics Sapelo2 Up20.png
subread 1.5.2 Bioinformatics Sapelo Up20.png
Subread 1.6.2 Bioinformatics Sapelo2 Up20.png
Supernova 2.0.1 Bioinformatics Sapelo2 Up20.png
T-Coffee 11.00.8cbe486 Bioinformatics Sapelo Up20.png
T-REX 1.0 Bioinformatics Sapelo Up20.png
TASSEL 5.2.44 Bioinformatics Sapelo2 Up20.png
TEPID 0.6 Bioinformatics Sapelo Up20.png
TIGRA 0.4.0 Bioinformatics Sapelo Up20.png
TMHMM 2.0c Bioinformatics Sapelo2 Up20.png
TOFU2 3.9 Bioinformatics Sapelo Up20.png
TPP 5.1.0 Bioinformatics Sapelo2 Up20.png
TRNAscan-SE 2.0.0 Bioinformatics Sapelo Up20.png
TRNAscan-SE 2.0.0 Bioinformatics Sapelo2 Up20.png
Tandem Repeats Finder 4.09 Bioinformatics Sapelo Up20.png
tassel 5.2.42 Bioinformatics Sapelo Up20.png
Tbl2asn 04172018 Bioinformatics Sapelo2 Up20.png
TensorFlow-models 20180620 Other Sapelo2 Up20.png
TensorFlow 1.8.0 Other Sapelo2 Up20.png
tesseract 3.04.01 Bioinformatics Sapelo Up20.png
Theano 0.8.0 Other Sapelo Up20.png
TopHat 2.1.1 Bioinformatics Teaching Up20.png
tophat 2.0.14 Bioinformatics Sapelo Up20.png
Tophat 2.1.1 Bioinformatics Sapelo2 Up20.png
TransDecoder 2.0.1 Bioinformatics Sapelo Up20.png
TransDecoder 2.1.0 Bioinformatics Sapelo2 Up20.png
Transposome 0.09.7 Bioinformatics Sapelo Up20.png
TransposonPSI 08222010 Bioinformatics Sapelo Up20.png
Transrate 1.0.1 Bioinformatics Sapelo Up20.png
TreeMix 1.13 Bioinformatics Sapelo Up20.png
TrimGalore 4.0 Bioinformatics Sapelo Up20.png
Trim_Galore 0.4.5 Bioinformatics Sapelo2 Up20.png
trimmomatic 0.36 Bioinformatics Sapelo Up20.png
Trimmomatic 0.36 Bioinformatics Sapelo2 Up20.png
Trimmomatic 0.36 Bioinformatics Teaching Up20.png
Trinity 2.06 Bioinformatics Sapelo Up20.png
Trinity r20140717, 2.5.1, 2.6.6 Bioinformatics Sapelo2 Up20.png
Trinity 2.6.6 Bioinformatics Teaching Up20.png
Trinotate 3.1.1 Bioinformatics Sapelo Up20.png
Trinotate 3.1.1 Bioinformatics Sapelo2 Up20.png
UCHIME 4.2.40 Bioinformatics Sapelo Up20.png
UCSC 06-17-2015 Bioinformatics Sapelo Up20.png
UPP 3.2 Other Sapelo2 Up20.png
ucsc 359 Bioinformatics Sapelo2 Up20.png
usearch 10.0.240 Bioinformatics Sapelo Up20.png
VCF-kit 0.1.6 Bioinformatics Sapelo2 Up20.png
VCFtools 0.1.15 Bioinformatics Sapelo2 Up20.png
VCFtools 0.1.15 Bioinformatics Teaching Up20.png
VSEARCH 2.8.1 Bioinformatics Sapelo2 Up20.png
VarScan 2.4.2 Bioinformatics Sapelo2 Up20.png
vcf2diploid 0.2.6a Chemistry Sapelo2 Up20.png
vcf2phylip 1.5 Bioinformatics Sapelo2 Up20.png
vcflib 1.0.0-rc1 Bioinformatics Sapelo Up20.png
vcflib 20180410 Bioinformatics Sapelo2 Up20.png
vcftools 0.1.12b Bioinformatics Sapelo Up20.png
velvet 1.2.10 Bioinformatics Sapelo Up20.png
Velvet 1.2.10 Bioinformatics Sapelo2 Up20.png
Velvet 1.2.10 Bioinformatics Teaching Up20.png
ViennaRNA 2.1.3 Bioinformatics Sapelo Up20.png
ViennaRNA 2.4.3, 2.4.6 Bioinformatics Sapelo2 Up20.png
viromescan 05292017 Bioinformatics Sapelo Up20.png
Vmatch 2.3.0 Bioinformatics Sapelo2 Up20.png
voxnet 0.1 Other Sapelo Up20.png
vsearch 1.10.1 Bioinformatics Sapelo Up20.png
WPS 3.6, 3.6.1, 3.7, 3.8 Other Sapelo Up20.png
WPS 3.8 Other Sapelo2 Up20.png
WRF-Chem 3.6.1, 3.8 Other Sapelo Up20.png
WRF-Chem 3.6.1, 3.8.0 Other Sapelo2 Up20.png
WRF-Fire 20170221 Other Sapelo2 Up20.png
WRF 3.6, 3.6.1, 3.7, 3.8 Other Sapelo Up20.png
WRF 3.6.1, 3.8.0 Other Sapelo2 Up20.png
WU Blast 2.2.6 Bioinformatics Sapelo Up20.png
WU Blast 2.2.6 Bioinformatics Sapelo2 Up20.png
wgs 8.2 Bioinformatics Sapelo Up20.png
whatshap 0.12 Bioinformatics Sapelo Up20.png
WinHap 2.0 Bioinformatics Sapelo Up20.png
Xander_assembler 7/12/2016 Bioinformatics Sapelo Up20.png
xforms 1.2.4 Graphics Sapelo2 Up20.png
YAHA 0.1.83 Bioinformatics Sapelo Up20.png
YASRA 2.33 Bioinformatics Sapelo Up20.png
YASRA 2.33 Bioinformatics Sapelo2 Up20.png
yt 3.2.3 Other Sapelo Up20.png
Zbar 0.10 Graphics Sapelo Up20.png
zlib 1.2.5, 1.2.8 Library Sapelo Up20.png

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