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qsub -q queuename ./blast.sh | qsub -q queuename ./blast.sh | ||
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=== Documentation === | === Documentation === | ||
Revision as of 13:01, 31 January 2013
NCBI Blast
Category: Bioinformatics
Program on
zcluster
Version
2.2.26
Author / Distributor
Description
BLAST (Basic Local Alignment Search Tool), more details at NCBI
Running Program
Also refer to submit jobs to queues
Latest version /usr/local/ncbiblast/latest/ is pointed to /usr/local/ncbiblast/2.26
Example of a shell script blast.sh to run on at the batch queue:
#!/bin/bash cd working_directory time /usr/local/ncbiblast/latest/bin/blastall -p blastn -d /db/ncbiblast/latest/nt -i QUERY -o out.QUERY
qsub -q queuename ./blast.sh
sample of comments
Documentation
NCBI website.
Installation
Executable binary code downloaded from NCBI Blast
System(s)
Unix