R-pcluster: Difference between revisions
Jump to navigation
Jump to search
(Created page with "Category:ZclusterCategory:SoftwareCategory:Statistics === Category === Statistics === Program On === pcluster === Version === 1.9.1 (pcluster), 2.1.1 (pclu...") |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
[[Category: | [[Category:Pcluster]] | ||
=== Category === | === Category === | ||
| Line 10: | Line 10: | ||
=== Version === | === Version === | ||
1.9.1 | 1.9.1, 2.1.1 | ||
=== Author / Distributor === | === Author / Distributor === | ||
| Line 24: | Line 24: | ||
Also refer to [[Running Jobs on pcluster]] | Also refer to [[Running Jobs on pcluster]] | ||
Example of usage | '''Example of usage''' | ||
To run R in a batch queue: | To run R in a batch queue: | ||
| Line 31: | Line 31: | ||
Script filename (runR.sh): | Script filename (runR.sh): | ||
<pre class=" | <pre class="gscript"> | ||
#!/bin/csh | #!/bin/csh | ||
cd working_directory | cd working_directory | ||
| Line 53: | Line 53: | ||
=== System === | === System === | ||
Unix (AIX) | |||
Latest revision as of 09:11, 5 June 2014
Category
Statistics
Program On
pcluster
Version
1.9.1, 2.1.1
Author / Distributor
Description
R is a language and environment for statistical computing and graphics. It provides a wide variety of statistical (linear and nonlinear modeling, classical statistical tests, time-series analysis, classification, clustering, ...) and graphical techniques.
Running Program
Also refer to Running Jobs on pcluster
Example of usage
To run R in a batch queue:
Create a script (called runR.sh in this example) with the following lines:
Script filename (runR.sh):
#!/bin/csh cd working_directory time R CMD BATCH R_program_name
Submit this script runR.sh to a serial queue (e.g., using up to 24h of wallclock time):
pcluster> ugsub T1-i1-t1-24h runR.sh
Documentation
Installation
- Installed in /usr/local/bin/
- Compiled without Lapack support.
- Version 1.9.1 is installed in /usr/local/R-1.9.1/
- Add-on packages fields, mcmc, and sna installed in /usr/local/R/lib/R/library/
System
Unix (AIX)