Software Template: Difference between revisions

Revision as of 12:57, 31 January 2013

zcluster

2.2.26

BLAST (Basic Local Alignment Search Tool), more details at NCBI

Latest version /usr/local/ncbiblast/latest/ is pointed to /usr/local/ncbiblast/2.26

Example of a shell script blast.sh to run on at the batch queue:

 #!/bin/bash
 cd working_directory
 time /usr/local/ncbiblast/latest/bin/blastall -p blastn -d /db/ncbiblast/latest/nt -i QUERY -o out.QUERY

 qsub -q queuename   ./blast.sh

NCBI website.

Executable binary code downloaded from NCBI Blast

Unix

@@ Line 1: / Line 1: @@
-<pre>
+[[Category:Zcluster]][[Category:Software]][[Category:Bioinformatics]]
-===Category===
+== NCBI Blast ==
-===Program On===
-===Version===
+=== Category: Bioinformatics ===
-===Author/Distributor===
-===Description===
+=== Program on ===
-===Running Program===
-===Documentation===
+zcluster
-===Installation===
-===Systems===
+=== Version ===
+.2.26
+=== Author / Distributor ===
+[http://www.ncbi.nlm.nih.gov NCBI]
+=== Description ===
+BLAST (Basic Local Alignment Search Tool), more details at [http://www.ncbi.nlm.nih.gov NCBI]
+=== Running Program ===
+Also refer to [[submit jobs to queues]]
+Latest version /usr/local/ncbiblast/latest/ is pointed to /usr/local/ncbiblast/2.26
+Example of a shell script blast.sh to run on at the batch queue:
+<pre class="gscript">
+ #!/bin/bash
+ cd working_directory
+ time /usr/local/ncbiblast/latest/bin/blastall -p blastn -d /db/ncbiblast/latest/nt -i QUERY -o out.QUERY
+</pre>
+<pre  class="gcommand">
+ qsub -q queuename   ./blast.sh
 </pre>
+=== Documentation ===
+[[NCBI]] website.
+=== Installation ===
+Executable binary code downloaded from [[NCBI Blast]]
+=== System(s) ===
+Unix