BWA: Difference between revisions

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<pre class="gcommand">
<pre class="gcommand">
/usr/local/bwa/latest/bwa index -p h19 -a bwtsw /db/hg/hg19/hg19.fa
/usr/local/bwa/latest/bwa index -p h19 -a bwtsw /db/hg/hg19/hg19.fa
/usr/local/bwa/latest/bwa index /db/hg/hg19/chromFa.tar.gz
</pre>
</pre>

Latest revision as of 11:51, 17 February 2014

hg19 is indexed at /db/hg/hg19

/usr/local/bwa/latest/bwa index -p h19 -a bwtsw /db/hg/hg19/hg19.fa