BWA: Difference between revisions
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<pre class="gcommand"> | <pre class="gcommand"> | ||
/usr/local/bwa/latest/bwa index -p h19 -a bwtsw /db/hg/hg19/hg19.fa | /usr/local/bwa/latest/bwa index -p h19 -a bwtsw /db/hg/hg19/hg19.fa | ||
/usr/local/bwa/latest/bwa index /db/hg19/chromFa.tar.gz | /usr/local/bwa/latest/bwa index /db/hg/hg19/chromFa.tar.gz | ||
</pre> | </pre> | ||
Revision as of 11:49, 17 February 2014
hg19 is indexed at /db/hg/hg19
/usr/local/bwa/latest/bwa index -p h19 -a bwtsw /db/hg/hg19/hg19.fa /usr/local/bwa/latest/bwa index /db/hg/hg19/chromFa.tar.gz