Software installed on Rocky 8

As part of our August 29-31,2023 maintenance window, the GACRC will be upgrading the Sapelo2 cluster operating system from CentOS 7 to Rocky 8.

Because this is a major OS update, we need to recompile all the applications and ensure that they work with the new version of OS.

Below is a list of the modules already installed on the Rocky 8 system. More software packages continue to be installed. If the software you need is not in this list yet, please feel free to let us know, if you would like us to install it centrally on the updated cluster.

All singularity containers available in /apps/singularity-images on the current Sapelo2 (CentOS 7) will continue to be available after the maintenance.

List of software already installed centrally on the Rocky 8 system (new Sapelo2, available after the maintenance)

  3D-DNA/201008-foss-2021b-Python-2.7.18
  ABySS/2.3.5-foss-2021b
  ACTC/1.1-GCCcore-11.2.0
  ADMIXTURE/1.3.0
  AGAT/0.9.2-GCC-11.2.0
  AGAT/1.1.0                                          
  AMOS/3.1.0-foss-2021b
  ANTLR/2.7.7-GCCcore-11.2.0-Java-11
  ANTs/2.4.4-foss-2021b
  APR-util/1.6.1-GCCcore-11.2.0
  APR/1.7.0-GCCcore-11.2.0
  ART/2016.06.05-GCC-11.2.0
  ASE/3.22.1-foss-2021b
  ASTRAL/5.7.8-Java-1.8.0_241
  ATK/2.36.0-GCCcore-11.2.0
  ATK/2.38.0-GCCcore-11.3.0                           
  AUGUSTUS/3.4.0-foss-2021b
  Amber/22.0-foss-2021b-AmberTools-22.3-CUDA-11.4.1
  Anaconda3/2022.10
  Archive-Zip/1.68-GCCcore-11.2.0
  Armadillo/11.4.3-foss-2021b
  Arrow/8.0.0-foss-2021b
  Autoconf/2.69-GCCcore-8.3.0
  Autoconf/2.69-GCCcore-10.2.0
  Autoconf/2.71-GCCcore-11.2.0
  Autoconf/2.71-GCCcore-11.3.0
  Autoconf/2.71-GCCcore-12.2.0                        
  Automake/1.16.1-GCCcore-8.3.0
  Automake/1.16.2-GCCcore-10.2.0
  Automake/1.16.4-GCCcore-11.2.0
  Automake/1.16.5-GCCcore-11.3.0
  Automake/1.16.5-GCCcore-12.2.0                      
  Autotools/20180311-GCCcore-8.3.0
  Autotools/20200321-GCCcore-10.2.0
  Autotools/20210726-GCCcore-11.2.0
  Autotools/20220317-GCCcore-11.3.0
  Autotools/20220317-GCCcore-12.2.0                   
  BBMap/38.98-GCC-11.2.0
  BCFtools/1.14-GCC-11.2.0
  BEDOPS/2.4.41-foss-2021b
  BEDTools/2.30.0-GCC-11.2.0
  BLAST+/2.2.31
  BLAST+/2.12.0-gompi-2021b
  BLAST+/2.13.0-gompi-2021b
  BLAST+/2.13.0-gompi-2022a                           
  BLAST/2.2.26-Linux_x86_64
  BLAT/3.5-GCC-11.2.0
  BLAT/3.7-GCC-11.3.0                                 
  BLIS/0.8.1-GCC-11.2.0
  BLIS/0.9.0-GCC-11.3.0                               
  BRAKER/2.1.6-foss-2021b
  BRIG/0.95-gompi-2021b-Java-1.8.0_241
  BUSCO/5.4.3-foss-2021b
  BWA/0.7.17-GCCcore-11.2.0
  BamTools/2.5.2-GCC-11.2.0
  BamUtil/1.0.15-foss-2021b
  Bandage/0.9.0-GCCcore-11.2.0
  BayeScan/2.1-foss-2019b
  Bazel/3.7.2-GCCcore-11.2.0
  Bazel/4.2.2-GCCcore-11.2.0
  Bazel/5.1.1-GCCcore-11.3.0                          
  Beagle/5.4.22Jul22.46e-Java-11
  Beast/2.7.1-foss-2021b-CUDA-11.4.1
  BigDFT/1.9.1-foss-2021b
  Bio-DB-HTS/3.01-GCC-11.2.0
  BioPerl/1.7.8-GCCcore-11.2.0
  Biopython/1.79-foss-2021b
  Biopython/1.79-foss-2022a
  Biopython/1.81-foss-2021b                           
  Bismark/0.23.1-foss-2021b
  Bison/3.3.2-GCCcore-8.3.0
  Bison/3.3.2
  Bison/3.7.1-GCCcore-10.2.0
  Bison/3.7.6-GCCcore-11.2.0
  Bison/3.8.2-GCCcore-11.3.0
  Bison/3.8.2-GCCcore-12.2.0
  Bison/3.8.2                                         
  Blosc/1.21.3-GCCcore-11.2.0
  Boost.Python/1.77.0-GCC-11.2.0
  Boost/1.75.0-GCC-11.2.0
  Boost/1.77.0-GCC-11.2.0
  Boost/1.79.0-GCC-11.3.0                             
  Bowtie/1.3.1-GCC-11.2.0
  Bowtie/1.3.1-GCC-11.3.0                             
  Bowtie2/2.4.4-GCC-11.2.0
  Bowtie2/2.4.5-GCC-11.2.0
  Bowtie2/2.4.5-GCC-11.3.0                            
  Bracken/2.7-GCCcore-11.2.0
  Brotli/1.0.9-GCCcore-11.2.0
  Brotli/1.0.9-GCCcore-11.3.0                         
  CD-HIT/4.8.1-GCC-11.2.0
  CD-HIT/4.8.1-GCC-11.3.0                             
  CFITSIO/3.49-GCCcore-11.2.0
  CGAL/4.14.3-gompi-2021b
  CGmapTools/0.1.2-foss-2021b
  CMake/3.12.1
  CMake/3.21.1-GCCcore-11.2.0
  CMake/3.22.1-GCCcore-11.2.0
  CMake/3.23.1-GCCcore-11.3.0
  CMake/3.24.3-GCCcore-11.3.0                         
  CUDA/11.3.1
  CUDA/11.4.1
  CUDA/11.7.0
  CUDA/12.0.0                                         
  CapnProto/0.9.1-GCCcore-11.2.0
  CellRanger/7.0.0
  Centrifuge/1.0.4-gompi-2021b
  Cereal/1.3.0
  Check/0.15.2-GCCcore-11.2.0
  CheckM/1.1.3-foss-2021b
  Chimera/1.16-linux_x86_64
  Circos/0.69-9-GCCcore-11.2.0
  Clang/13.0.1-GCCcore-11.2.0
  Clustal-Omega/1.2.4-GCC-11.2.0
  ClustalW2/2.1-GCC-11.2.0
  Consed/29.0-foss-2021b
  CoordgenLibs/3.0.1-gompi-2021b
  CppUnit/1.15.1-GCCcore-11.2.0
  Cufflinks/20190706-GCC-11.2.0
  Cytoscape/3.9.1-Java-11
  DB/18.1.32-GCCcore-8.3.0
  DB/18.1.40-GCCcore-10.2.0
  DB/18.1.40-GCCcore-11.2.0
  DB/18.1.40-GCCcore-11.3.0
  DB/18.1.40-GCCcore-12.2.0                           
  DBD-mysql/4.050-GCC-11.2.0
  DB_File/1.857-GCCcore-11.2.0
  DBus/1.13.18-GCCcore-11.2.0
  DBus/1.14.0-GCCcore-11.3.0                          
  DIAMOND/2.0.13-GCC-11.2.0
  DIAMOND/2.0.15-GCC-11.2.0
  DIAMOND/2.1.0-GCC-11.3.0                            
  DataWarrior/5.5.0
  DendroPy/4.5.2-GCCcore-11.2.0
  Deve-Size/0.83-GCCcore-11.2.0-Perl-5.34.0
  DockQ/1.0-foss-2022a
  Doxygen/1.9.1-GCCcore-11.2.0
  Doxygen/1.9.4-GCCcore-11.3.0                        
  ELPA/2021.11.001-foss-2021b
  EMBOSS/6.6.0-foss-2021b
  ETE/3.1.2-foss-2021b
  EasyBuild/4.6.0
  Eigen/3.3.9-GCCcore-11.2.0
  Eigen/3.4.0-GCCcore-11.2.0
  Eigen/3.4.0-GCCcore-11.3.0                          
  EnTAP/0.10.8-beta-foss-2021b
  Exonerate/2.4.0-GCC-11.2.0
  FASTX-Toolkit/0.0.14-GCC-11.2.0
  FFTW.MPI/3.3.10-gompi-2022a
  FFTW/3.3.8-gompi-2019b
  FFTW/3.3.10-GCC-11.3.0
  FFTW/3.3.10-gompi-2021b                             
  FFmpeg/4.3.2-GCCcore-11.2.0
  FLAC/1.3.3-GCCcore-11.2.0
  FLAC/1.3.4-GCCcore-11.3.0                           
  FLASH/2.2.00-GCC-11.2.0
  FLTK/1.3.7-GCCcore-11.2.0
  FSL/6.0.5.1-foss-2021b
  FTGL/2.4.0-GCCcore-11.3.0
  FastANI/1.33-GCC-11.2.0
  FastME/2.1.6.1-GCC-11.2.0
  FastQC/0.11.9-Java-11
  FastTree/2.1.11-GCCcore-11.2.0
  Flask/2.0.2-GCCcore-11.2.0
  Flask/2.2.2-GCCcore-11.3.0                          
  FlexiBLAS/3.0.4-GCC-11.2.0
  FlexiBLAS/3.2.0-GCC-11.3.0                          
  Flye/2.9.1-GCC-11.2.0
  FragGeneScan/1.31-GCCcore-11.2.0
  FreeImage/3.18.0-GCCcore-11.2.0
  FreeSurfer/7.4.1-foss-2021b
  FriBidi/1.0.10-GCCcore-11.2.0
  FriBidi/1.0.12-GCCcore-11.3.0                       
  GATK/4.3.0.0-GCCcore-11.2.0-Java-11
  GATK/4.3.0.0-GCCcore-11.2.0-Java-13.0.2
  GATK/4.3.0.0-GCCcore-11.3.0-Java-11                 
  GCC/8.3.0
  GCC/10.2.0
  GCC/11.2.0
  GCC/11.3.0
  GCC/12.2.0                                          
  GCCcore/8.3.0
  GCCcore/10.2.0
  GCCcore/11.2.0
  GCCcore/11.3.0
  GCCcore/12.2.0                                      
  GD/2.75-GCCcore-11.2.0
  GDAL/3.3.2-foss-2021b
  GDAL/3.5.0-foss-2022a                               
  GDRCopy/2.3-GCCcore-11.2.0
  GDRCopy/2.3-GCCcore-11.3.0                          
  GEOS/3.9.1-GCC-11.2.0
  GEOS/3.10.3-GCC-11.3.0                              
  GLPK/5.0-GCCcore-11.2.0
  GLPK/5.0-GCCcore-11.3.0                             
  GLib/2.69.1-GCCcore-11.2.0
  GLib/2.72.1-GCCcore-11.3.0                          
  GLibmm/2.66.4-GCCcore-11.2.0
  GMAP-GSNAP/2021-21-17-GCC-11.2.0
  GMAP-GSNAP/2023-02-17-GCC-11.3.0                    
  GMP/6.1.2-GCCcore-8.3.0
  GMP/6.2.1-GCCcore-11.2.0
  GMP/6.2.1-GCCcore-11.3.0                            
  GObject-Introspection/1.68.0-GCCcore-11.2.0
  GObject-Introspection/1.72.0-GCCcore-11.3.0         
  GROMACS/2021.5-foss-2021b-CUDA-11.4.1-PLUMED-2.8.0
  GSL/2.7-GCC-11.2.0
  GSL/2.7-GCC-11.3.0                                  
  GST-plugins-base/1.18.5-GCC-11.2.0
  GStreamer/1.18.5-GCC-11.2.0
  GTK+/3.24.23-GCCcore-11.3.0
  GTK2/2.24.33-GCCcore-11.3.0
  GTK3/3.24.31-GCCcore-11.2.0
  GTS/0.7.6-GCCcore-11.2.0
  Gdk-Pixbuf/2.42.6-GCCcore-11.2.0
  Gdk-Pixbuf/2.42.8-GCCcore-11.3.0                    
  GeneMark-ET/4.71-GCCcore-11.2.0
  GeneMarkS-T/5.1-GCCcore-11.2.0
  Genome/05012020-foss-2021b
  GenomeThreader/1.7.3-Linux_x86_64-64bit
  GenomeTools/1.6.2-GCC-11.2.0
  GffCompare/0.12.6-GCC-11.2.0
  Ghostscript/9.54.0-GCCcore-11.2.0
  Ghostscript/9.56.1-GCCcore-11.3.0                   
  GitPython/3.1.24-GCCcore-11.2.0
  GlimmerHMM/3.0.4c-GCC-11.2.0
  Globus-CLI/3.6.0-GCCcore-11.2.0
  Go/1.17.6
  Grace/5.1.25-foss-2021b
  Graphviz/2.50.0-GCCcore-11.2.0
  Guile/3.0.7-GCCcore-11.2.0
  HDF/4.2.15-GCCcore-11.2.0
  HDF/4.2.15-GCCcore-11.3.0                           
  HDF5/1.10.8-gompi-2021b
  HDF5/1.10.8-gompi-2022a
  HDF5/1.12.1-gompi-2021b
  HDF5/1.12.2-gompi-2022a                             
  HEC-RAS/6.10
  HH-suite/3.3.0-gompi-2021b
  HISAT2/2.2.1-gompi-2021b
  HISAT2/2.2.1-gompi-2022a                            
  HMMER/3.3.2-gompi-2021b
  HMMER/3.3.2-gompi-2022a                             
  HPL/2.3-foss-2021b
  HTSeq/2.0.2-foss-2021b
  HTSlib/1.9-GCC-11.2.0
  HTSlib/1.14-GCC-11.2.0
  HTSlib/1.15.1-GCC-11.3.0                            
  HarfBuzz/2.8.2-GCCcore-11.2.0
  HarfBuzz/4.2.1-GCCcore-11.3.0                       
  HyPhy/2.5.33-gompi-2021b
  ICU/69.1-GCCcore-11.2.0
  ICU/71.1-GCCcore-11.3.0                             
  IDBA-UD/1.1.3-GCC-11.2.0
  IGV/2.16.1-Java-11
  IPython/7.26.0-GCCcore-11.2.0
  IQ-TREE/2.2.1-gompi-2021b
  ISA-L/2.30.0-GCCcore-11.2.0
  ImageMagick/7.1.0-4-GCCcore-11.2.0
  ImageMagick/7.1.0-37-GCCcore-11.3.0                 
  Infernal/1.1.4-foss-2021b
  Infernal/1.1.4-foss-2022a                           
  InterProScan/5.62-94.0-foss-2021b
  JAGS/4.3.0-foss-2021b
  JasPer/2.0.33-GCCcore-11.2.0
  JasPer/2.0.33-GCCcore-11.3.0                        
  Java/1.7.0_80
  Java/1.8.0_241
  Java/11.0.16                                        (11)
  Java/13.0.2                                         (13)
  Java/15.0.1                                         (15)
  Java/17.0.6                                         (D:17)
  Jellyfish/2.3.0-GCC-11.2.0
  Jellyfish/2.3.0-GCC-11.3.0                          
  JsonCpp/1.9.4-GCCcore-11.2.0
  JsonCpp/1.9.5-GCCcore-11.3.0                        
  Judy/1.0.5-GCCcore-11.2.0
  Judy/1.0.5-GCCcore-11.3.0                           
  Julia/1.8.2-linux-x86_64
  Kalign/3.3.2-GCCcore-11.2.0
  Kent_tools/422-GCC-11.2.0
  KronaTools/2.8.1-GCCcore-11.2.0
  LAME/3.100-GCCcore-11.2.0
  LAME/3.100-GCCcore-11.3.0                           
  LAMMPS/23Jun2022-foss-2021b-kokkos
  LAPACK/3.10.1-GCC-11.2.0
  LASTZ/1.04.15-foss-2021b
  LLVM/12.0.1-GCCcore-11.2.0
  LLVM/14.0.3-GCCcore-11.3.0                          
  LMDB/0.9.29-GCCcore-11.2.0
  LMDB/0.9.29-GCCcore-11.3.0                          
  LSD2/2.3-GCCcore-11.2.0
  LTR_retriever/2.9.0-foss-2021b-RepeatMasker-4.1.4
  LTR_retriever/2.9.0-foss-2021b                      
  LZO/2.10-GCCcore-11.2.0
  LZO/2.10-GCCcore-11.3.0                             
  LibTIFF/4.3.0-GCCcore-11.2.0
  LibTIFF/4.3.0-GCCcore-11.3.0                        
  LightGBM/3.3.5-foss-2021b-CUDA-11.4.1
  LightGBM/3.3.5-foss-2021b                           
  LittleCMS/2.12-GCCcore-11.2.0
  LittleCMS/2.13.1-GCCcore-11.3.0                     
  LoFreq/2.1.3.1-foss-2021b-Python-2.7.18
  Lua/5.4.3-GCCcore-11.2.0
  M4/1.4.18-GCCcore-8.3.0
  M4/1.4.18-GCCcore-10.2.0
  M4/1.4.18
  M4/1.4.19-GCCcore-11.2.0
  M4/1.4.19-GCCcore-11.3.0
  M4/1.4.19-GCCcore-12.2.0
  M4/1.4.19                                           
  MACS2/2.2.7.1-foss-2021b
  MAFFT/7.490-GCC-11.2.0-with-extensions
  MAFFT/7.490-gompi-2021b-with-extensions             
  MCL/14.137-GCCcore-11.2.0
  MEGAN/6.24.23-Java-17
  MEME/5.4.1-gompi-2021b
  MEME/5.5.0-gompi-2021b                              
  METIS/5.1.0-GCCcore-11.2.0
  MMseqs2/13-45111-gompi-2021b
  MMseqs2/14-7e284-gompi-2021b
  MMseqs2/14-7e284-gompi-2022a                        
  MPFR/4.1.0-GCCcore-11.2.0
  MPFR/4.1.0-GCCcore-11.3.0                           
  MUMmer/4.0.0beta2-GCCcore-11.2.0
  MUMmer/4.0.0rc1-GCCcore-11.2.0                      
  MUSCLE/3.8.31-GCCcore-11.2.0
  Make-Lastz-Chains/0.9.1
  Mako/1.1.4-GCCcore-11.2.0
  Mako/1.2.0-GCCcore-11.3.0                           
  MariaDB/10.6.4-GCC-11.2.0
  MariaDB/10.9.3-GCC-11.3.0                           
  Mash/2.3-GCC-11.2.0
  Mesa/21.1.7-GCCcore-11.2.0
  Mesa/22.0.3-GCCcore-11.3.0                          
  Meson/0.55.3-GCCcore-11.2.0
  Meson/0.58.2-GCCcore-11.2.0
  Meson/0.62.1-GCCcore-11.3.0                         
  MetaEuk/6-GCC-11.2.0
  Miniconda3/4.12.0
  Mirage/2.0.0-GCCcore-11.2.0
  MuTect/1.1.7-Java-1.7.0_80
  MultiQC/1.12-foss-2021b
  MySQL/8.0.34-glibc2.28
  NASM/2.15.05-GCCcore-11.2.0
  NASM/2.15.05-GCCcore-11.3.0                         
  NCCL/2.10.3-GCCcore-11.2.0-CUDA-11.4.1
  NGS/2.10.9-GCCcore-11.2.0
  NGS/2.11.2-GCCcore-11.2.0                           
  NLopt/2.7.0-GCCcore-11.2.0
  NLopt/2.7.1-GCCcore-11.3.0                          
  NSPR/4.32-GCCcore-11.2.0
  NSS/3.69-GCCcore-11.2.0
  NVHPC/22.11-CUDA-11.7.0
  NVHPC/23.1-CUDA-12.0.0                              
  Nextflow/22.10.6
  Ninja/1.10.2-GCCcore-11.2.0
  Ninja/1.10.2-GCCcore-11.3.0                         
  ORCA/5.0.3-gompi-2021b
  OpenBLAS/0.3.7-GCC-8.3.0
  OpenBLAS/0.3.18-GCC-11.2.0
  OpenBLAS/0.3.20-GCC-11.3.0                          
  OpenBabel/3.1.1-gompi-2021b
  OpenCV/4.5.5-foss-2021b-contrib
  OpenEXR/3.1.1-GCCcore-11.2.0
  OpenJPEG/2.4.0-GCCcore-11.2.0
  OpenJPEG/2.5.0-GCCcore-11.3.0                       
  OpenMM/7.5.1-foss-2021b-DeepMind-patch
  OpenMPI/4.1.2-GCC-11.2.0-pmi2
  OpenMPI/4.1.2-GCC-11.2.0
  OpenMPI/4.1.4-GCC-11.3.0
  OpenMPI/4.1.4-GCC-12.2.0                            
  OpenPGM/5.2.122-GCCcore-11.2.0
  OpenSSL/1.1
  OrthoFinder/2.5.4-foss-2021b
  PAML/4.9j-GCCcore-11.2.0
  PCRE/8.45-GCCcore-11.2.0
  PCRE/8.45-GCCcore-11.3.0                            
  PCRE2/10.37-GCCcore-11.2.0
  PCRE2/10.40-GCCcore-11.3.0                          
  PLINK/2.00a4-GCC-11.2.0
  PLUMED/2.7.3-foss-2021b
  PLUMED/2.8.0-foss-2021b                             
  PMIx/3.1.5-GCCcore-10.2.0
  PMIx/4.1.0-GCCcore-11.2.0
  PMIx/4.1.2-GCCcore-11.3.0
  PMIx/4.2.2-GCCcore-12.2.0                           
  PROJ/8.1.0-GCCcore-11.2.0
  PROJ/9.0.0-GCCcore-11.3.0                           
  PTarPmiR/0.1-foss-2021b-Python-3.9.6
  Pango/1.48.8-GCCcore-11.2.0
  Pango/1.50.7-GCCcore-11.3.0                         
  Perl/5.30.0-GCCcore-8.3.0-minimal
  Perl/5.30.0-GCCcore-8.3.0
  Perl/5.32.0-GCCcore-10.2.0-minimal
  Perl/5.32.0-GCCcore-10.2.0
  Perl/5.34.0-GCCcore-11.2.0-minimal
  Perl/5.34.0-GCCcore-11.2.0
  Perl/5.34.1-GCCcore-11.3.0-minimal
  Perl/5.34.1-GCCcore-11.3.0
  Perl/5.36.0-GCCcore-12.2.0                          
  Phobius/1.01-GCCcore-11.2.0-Perl-5.34.0
  Phrap/0.990329-foss-2021b
  Phred/0.071220.c-foss-2021b
  Pillow/8.3.2-GCCcore-11.2.0
  Pilon/1.23-Java-11
  PnetCDF/1.12.3-gompi-2021b
  PyBioLib/1.1.988-GCCcore-11.3.0
  PyQt5/5.15.4-GCCcore-11.2.0
  PyRosetta/4.release-339-GCCcore-11.2.0-Python-3.9.6
  PyTorch/1.12.1-foss-2021b-CUDA-11.4.1
  PyYAML/5.4.1-GCCcore-11.2.0
  PyYAML/6.0-GCCcore-11.2.0
  PyYAML/6.0-GCCcore-11.3.0                           
  Pysam/0.17.0-GCC-11.2.0
  Python/2.7.18-GCCcore-11.2.0-bare
  Python/2.7.18-GCCcore-11.2.0
  Python/3.7.4-GCCcore-8.3.0
  Python/3.9.6-GCCcore-11.2.0-bare
  Python/3.9.6-GCCcore-11.2.0
  Python/3.10.4-GCCcore-11.3.0-bare
  Python/3.10.4-GCCcore-11.3.0                        
  QUAST/5.0.2-foss-2021b
  Qhull/2020.2-GCCcore-11.2.0
  Qt5/5.15.2-GCCcore-11.2.0
  QuantumESPRESSO/7.1-foss-2021b
  Qwt/6.2.0-GCCcore-11.2.0
  R/4.1.2-foss-2021b
  R/4.2.1-foss-2021b
  R/4.2.1-foss-2022a                                  
  RAxML/8.2.12-gompi-2021b-hybrid-avx2
  RDKit/2022.03.5-foss-2021b
  RE2/2022-02-01-GCCcore-11.2.0
  RECON/1.08-GCC-11.2.0
  RMBlast/2.11.0-gompi-2021b
  RMBlast/2.13.0-gompi-2021b                          
  RSEM/1.3.3-foss-2021b
  RSEM/1.3.3-foss-2022a                               
  Racon/1.5.0-GCCcore-11.2.0
  RapidJSON/1.1.0-GCCcore-11.2.0
  RepeatMasker/4.1.2-p1-foss-2021b
  RepeatMasker/4.1.4-foss-2021b                       
  RepeatModeler/2.0.2a-foss-2021b
  RepeatModeler/2.0.3-foss-2021b
  RepeatModeler/2.0.4-foss-2021b                      
  RepeatProfiler/1.1-foss-2021b
  RepeatScout/1.0.6-GCC-11.2.0
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  Ruby/3.0.5-GCCcore-11.2.0
  Rust/1.54.0-GCCcore-11.2.0
  Rust/1.60.0-GCCcore-11.3.0                          
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  SAMtools/1.6-GCC-11.2.0
  SAMtools/1.14-GCC-11.2.0
  SAMtools/1.16.1-GCC-11.3.0                          
  SCons/4.2.0-GCCcore-11.2.0
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  SLATEC/4.1-GCC-11.2.0
  SMRT-Link/12.0.0.177059-cli-tools-only
  SNAP-HMM/20190603-GCC-11.2.0
  SNAP/2.0.1-GCC-11.2.0
  SPAdes/3.15.3-GCC-11.2.0
  SPAdes/3.15.5-GCC-11.2.0-kmer300
  SPAdes/3.15.5-GCC-11.2.0                            
  SQANTI3/5.1.1
  SQLAlchemy/1.4.42-foss-2021b-Python-3.9.6
  SQLite/3.29.0-GCCcore-8.3.0
  SQLite/3.36-GCCcore-11.2.0
  SQLite/3.38.3-GCCcore-11.3.0                        
  SRA-Toolkit/3.0.1-centos_linux64
  SRA-Toolkit/3.0.3-gompi-2022a                       
  SSW/1.1-GCCcore-11.2.0
  STAR/2.7.10b-GCC-11.2.0
  STAR/2.7.10b-GCC-11.3.0                             
  SWIG/4.0.2-GCCcore-11.2.0
  Salmon/0.8.2
  Salmon/1.9.0-GCC-11.2.0
  Salmon/1.9.0-GCC-11.3.0                             
  ScaFaCoS/1.0.1-foss-2021b
  ScaLAPACK/2.0.2-gompi-2019b
  ScaLAPACK/2.1.0-gompi-2021b-fb
  ScaLAPACK/2.2.0-gompi-2022a-fb                      
  SciPy-bundle/2021.10-foss-2021b-Python-2.7.18
  SciPy-bundle/2021.10-foss-2021b
  SciPy-bundle/2022.05-foss-2021b
  SciPy-bundle/2022.05-foss-2022a                     
  SeqKit/0.16.1
  SeqKit/2.3.1                                        
  SeqLib/1.2.0-GCC-11.2.0
  Serf/1.3.9-GCCcore-11.2.0
  Shapely/1.8.2-foss-2021b
  ShortStack/4.0.1-foss-2021b-Perl-5.34.0
  SignalP/4.1f-GCCcore-11.2.0
  SignalP/5.0b-Linux
  SignalP/6.0g-GCCcore-11.2.0-slow-sequential         
  Stacks/2.62-foss-2021b
  StringTie/2.2.1-GCC-11.2.0
  Structure/2.3.4-GCC-11.2.0
  Subread/2.0.3-GCC-11.2.0
  Subversion/1.14.1-GCCcore-11.2.0
  SuiteSparse/5.10.1-foss-2021b-METIS-5.1.0
  Szip/2.1.1-GCCcore-11.2.0
  Szip/2.1.1-GCCcore-11.3.0                           
  TMHMM/2.0c-GCCcore-11.2.0-Perl-5.34.0
  TRF/4.09.1-GCCcore-11.2.0
  TWL-NINJA/0.97-cluster_only-GCC-11.2.0
  TWL-NINJA/0.98-cluster_only-GCC-11.2.0              
  Tcl/8.6.9-GCCcore-8.3.0
  Tcl/8.6.11-GCCcore-11.2.0
  Tcl/8.6.12-GCCcore-11.3.0                           
  TensorFlow/2.7.1-foss-2021b-CUDA-11.4.1
  TensorFlow/2.11.0-foss-2022a                        
  Theano/1.1.2-foss-2021b-PyMC
  Tk/8.6.11-GCCcore-11.2.0
  Tk/8.6.12-GCCcore-11.3.0                            
  Tkinter/2.7.18-GCCcore-11.2.0
  Tkinter/3.9.6-GCCcore-11.2.0                        
  TransDecoder/5.5.0-GCC-11.3.0
  TransDecoder/5.7.0-GCC-11.3.0                       
  Transrate/1.0.3
  TreeMix/1.13-GCC-11.2.0
  Trim_Galore/0.6.7-GCCcore-11.2.0
  Trimmomatic/0.39-Java-13
  Trinity/2.15.1-foss-2021b
  Trinity/2.15.1-foss-2022a                           
  Trinotate/4.0.1-foss-2022a
  UCC/1.0.0-GCCcore-11.3.0
  UCC/1.1.0-GCCcore-12.2.0                            
  UCLUST/1.2.22q-i86linux64
  UCX-CUDA/1.11.2-GCCcore-11.2.0-CUDA-11.4.1
  UCX-CUDA/1.12.1-GCCcore-11.3.0-CUDA-11.7.0          
  UCX/1.9.0-GCCcore-10.2.0
  UCX/1.11.2-GCCcore-11.2.0
  UCX/1.12.1-GCCcore-11.3.0
  UCX/1.13.1-GCCcore-12.2.0                           
  UDUNITS/2.2.28-GCCcore-11.2.0
  UDUNITS/2.2.28-GCCcore-11.3.0                       
  UMI-tools/1.1.2-foss-2021b-Python-3.9.6
  USEARCH/11.0.667-i86linux32
  UnZip/6.0-GCCcore-11.2.0
  UnZip/6.0-GCCcore-11.3.0                            
  Unicycler/0.5.0-gompi-2021b-Python-3.9.6
  Unicycler/0.5.0-gompi-2021b                         
  VCFtools/0.1.16-GCC-11.2.0
  VEP/105-GCC-11.2.0
  VSEARCH/2.22.1-GCC-11.2.0
  VTK/9.1.0-foss-2021b
  Velvet/1.2.10-GCC-11.2.0-mt-kmer_191
  ViennaRNA/2.5.1-foss-2021b
  Voro++/0.4.6-GCCcore-11.2.0
  WEKA/3.8.6-Java-1.8.0_241
  WPS/4.4-foss-2021b-dmpar
  WRF-Chem-KPP/4.4.2-foss-2021b-dmpar
  WRF-Chem/4.4.2-foss-2021b-dmpar
  WRF/4.3-foss-2021b-dmpar
  WRF/4.4.2-foss-2021b-dmpar                          
  WU-Blast/2.2.6-GCC-11.2.0
  X11/20210802-GCCcore-11.2.0
  X11/20220504-GCCcore-11.3.0                         
  XML-Compile/1.63-GCCcore-11.2.0
  XML-LibXML/2.0207-GCCcore-11.2.0
  XZ/5.2.4-GCCcore-8.3.0
  XZ/5.2.5-GCCcore-10.2.0
  XZ/5.2.5-GCCcore-11.2.0
  XZ/5.2.5-GCCcore-11.3.0
  XZ/5.2.7-GCCcore-12.2.0                             
  XlsxWriter/3.0.8-GCCcore-11.3.0
  Xvfb/1.20.13-GCCcore-11.2.0
  Xvfb/21.1.3-GCCcore-11.3.0                          
  Yasm/1.3.0-GCCcore-11.2.0
  Z3/4.8.12-GCCcore-11.2.0
  ZeroMQ/4.3.4-GCCcore-11.2.0
  Zip/3.0-GCCcore-11.2.0
  Zip/3.0-GCCcore-11.3.0                              
  angsd/0.940-GCC-11.2.0
  annovar/20200607-GCCcore-11.2.0-Perl-5.34.0
  ant/1.10.11-Java-11
  ant/1.10.12-Java-11                                 
  archspec/0.1.3-GCCcore-11.2.0
  argtable/2.13-GCCcore-11.2.0
  aria2/1.36.0-GCCcore-11.2.0
  arpack-ng/3.8.0-foss-2021b
  at-spi2-atk/2.38.0-GCCcore-11.2.0
  at-spi2-atk/2.38.0-GCCcore-11.3.0                   
  at-spi2-core/2.40.3-GCCcore-11.2.0
  at-spi2-core/2.44.1-GCCcore-11.3.0                  
  attr/2.5.1-GCCcore-11.2.0
  bam-readcount/0.8.0-GCC-11.2.0
  barrnap/0.9-gompi-2021b
  bcbio-gff/0.7.0-foss-2021b
  bcl2fastq2/2.20.0-GCC-11.2.0
  beagle-lib/4.0.0-foss-2021b-CUDA-11.4.1
  binutils/2.32-GCCcore-8.3.0
  binutils/2.32
  binutils/2.35-GCCcore-10.2.0
  binutils/2.35
  binutils/2.37-GCCcore-11.2.0
  binutils/2.37
  binutils/2.38-GCCcore-11.3.0
  binutils/2.38
  binutils/2.39-GCCcore-12.2.0
  binutils/2.39                                       
  bioawk/1.0-GCC-11.2.0
  biom-format/2.1.14-foss-2021b
  bokeh/2.4.2-foss-2021b
  bokeh/2.4.3-foss-2021b                              
  boto3/1.20.13-GCCcore-11.2.0
  breseq/0.38.1-foss-2021b
  bwa-meth/0.2.6-GCC-11.2.0
  bx-python/0.8.13-foss-2021b
  bzip2/1.0.8-GCCcore-8.3.0
  bzip2/1.0.8-GCCcore-11.2.0
  bzip2/1.0.8-GCCcore-11.3.0                          
  c-ares/1.18.1-GCCcore-11.2.0
  cURL/7.78.0-GCCcore-11.2.0
  cURL/7.83.0-GCCcore-11.3.0                          
  cairo/1.16.0-GCCcore-11.2.0
  cairo/1.17.4-GCCcore-11.3.0                         
  canu/2.2-GCCcore-11.2.0
  ccache/4.6.3-GCCcore-11.2.0
  cppy/1.1.0-GCCcore-11.2.0
  cuDNN/8.2.1.32-CUDA-11.3.1
  cuDNN/8.2.2.26-CUDA-11.4.1
  cuDNN/8.4.1.50-CUDA-11.7.0
  cuDNN/8.8.0.121-CUDA-12.0.0                         
  cutadapt/3.5-GCCcore-11.2.0
  dask/2022.1.0-foss-2021b
  deepTools/3.5.1-foss-2021b
  dill/0.3.6-GCCcore-11.3.0
  dm-tree/0.1.6-GCCcore-11.2.0
  dorado/0.3.0-CUDA-11.4.1
  double-conversion/3.1.5-GCCcore-11.2.0
  double-conversion/3.2.0-GCCcore-11.3.0              
  eggnog-mapper/2.1.9-foss-2022a
  elfutils/0.185-GCCcore-11.2.0
  expat/2.2.7-GCCcore-8.3.0
  expat/2.2.9-GCCcore-10.2.0
  expat/2.4.1-GCCcore-11.2.0
  expat/2.4.8-GCCcore-11.3.0
  expat/2.4.9-GCCcore-12.2.0                          
  expecttest/0.1.3-GCCcore-11.2.0
  fastahack/1.0.0-GCCcore-11.2.0
  fastp/0.23.2-GCC-11.2.0
  fermi-lite/20190320-GCCcore-11.2.0
  file/5.41-GCCcore-11.2.0
  file/5.43-GCCcore-11.3.0                            
  filevercmp/20191210-GCCcore-11.2.0
  flatbuffers-python/2.0-GCCcore-11.2.0
  flatbuffers/2.0.0-GCCcore-11.2.0
  flatbuffers/2.0.7-GCCcore-11.3.0                    
  flex/2.6.4-GCCcore-8.3.0
  flex/2.6.4-GCCcore-10.2.0
  flex/2.6.4-GCCcore-11.2.0
  flex/2.6.4-GCCcore-11.3.0
  flex/2.6.4-GCCcore-12.2.0
  flex/2.6.4                                          
  fontconfig/2.13.94-GCCcore-11.2.0
  fontconfig/2.14.0-GCCcore-11.3.0                    
  foss/2019b
  foss/2021b
  foss/2022a                                          
  freeglut/3.2.1-GCCcore-11.2.0
  freetype/2.11.0-GCCcore-11.2.0
  freetype/2.12.1-GCCcore-11.3.0                      
  fsom/20141119-GCCcore-11.2.0
  gaussian/09-AMD-SSE4a
  gaussian/09-Intel-SSE4_2
  gaussian/16-AVX
  gaussian/16-AVX2
  gaussian/16-SSE4                                    
  gc/8.2.0-GCCcore-11.2.0
  gettext/0.19.8.1
  gettext/0.21-GCCcore-11.2.0
  gettext/0.21-GCCcore-11.3.0
  gettext/0.21
  gettext/0.21.1                                      
  gffread/0.12.7-GCCcore-11.2.0
  gflags/2.2.2-GCCcore-11.2.0
  giflib/5.2.1-GCCcore-11.2.0
  giflib/5.2.1-GCCcore-11.3.0                         
  git/2.33.1-GCCcore-11.2.0-nodocs
  git/2.36.0-GCCcore-11.3.0-nodocs                    
  glew/2.2.0-GCCcore-11.3.0-egl
  gnuplot/5.4.2-GCCcore-11.2.0
  gompi/2019b
  gompi/2021b
  gompi/2022a                                         
  googletest/1.11.0-GCCcore-11.3.0
  gperf/3.1-GCCcore-11.2.0
  gperf/3.1-GCCcore-11.3.0                            
  graphite2/1.3.14-GCCcore-11.2.0
  groff/1.22.4-GCCcore-8.3.0
  groff/1.22.4-GCCcore-10.2.0
  groff/1.22.4-GCCcore-11.2.0
  groff/1.22.4-GCCcore-11.3.0
  groff/1.22.4-GCCcore-12.2.0                         
  gzip/1.10-GCCcore-11.2.0
  gzip/1.12-GCCcore-11.3.0                            
  h5py/3.6.0-foss-2021b
  h5py/3.7.0-foss-2022a                               
  help2man/1.47.8-GCCcore-8.3.0
  help2man/1.47.16-GCCcore-10.2.0
  help2man/1.48.3-GCCcore-11.2.0
  help2man/1.49.2-GCCcore-11.3.0
  help2man/1.49.2-GCCcore-12.2.0                      
  hiredis/1.0.2-GCCcore-11.2.0
  hsi/1.0.0-GCCcore-11.2.0
  hwloc/1.11.12-GCCcore-8.3.0
  hwloc/2.2.0-GCCcore-10.2.0
  hwloc/2.5.0-GCCcore-11.2.0
  hwloc/2.7.1-GCCcore-11.3.0
  hwloc/2.8.0-GCCcore-12.2.0                          
  hypothesis/4.57.1-GCCcore-11.2.0-Python-2.7.18
  hypothesis/6.14.6-GCCcore-11.2.0
  hypothesis/6.46.7-GCCcore-11.3.0                    
  iccifort/2019.5.281
  igv-reports/1.7.0-GCC-11.2.0-Python-3.9.6
  iimpi/2021b
  imageio/2.13.5-foss-2021b
  imkl-FFTW/2021.4.0-iimpi-2021b
  imkl/2021.4.0
  impi/2021.4.0-intel-compilers-2021.4.0
  intel-compilers/2021.4.0
  intel-compilers/2022.2.1                            
  intel/2021b
  intervaltree/0.1-GCCcore-11.2.0
  intltool/0.51.0-GCCcore-11.2.0
  intltool/0.51.0-GCCcore-11.3.0                      
  jax/0.3.23-foss-2021b-CUDA-11.4.1
  jbigkit/2.1-GCCcore-11.2.0
  jbigkit/2.1-GCCcore-11.3.0                          
  jemalloc/5.2.1-GCCcore-11.2.0
  jemalloc/5.2.1-GCCcore-11.3.0
  jemalloc/5.3.0-GCCcore-11.3.0                       
  kallisto/0.48.0-gompi-2021b
  kallisto/0.48.0-gompi-2022a                         
  kim-api/2.3.0-GCCcore-11.2.0
  kineto/0.4.0-GCC-11.2.0
  libGLU/9.0.2-GCCcore-11.2.0
  libGLU/9.0.2-GCCcore-11.3.0                         
  libaio/0.3.112-GCCcore-11.2.0
  libaio/0.3.112-GCCcore-11.3.0                       
  libarchive/3.5.1-GCCcore-11.2.0
  libarchive/3.6.1-GCCcore-11.3.0                     
  libcerf/1.17-GCCcore-11.2.0
  libdeflate/1.8-GCCcore-11.2.0
  libdeflate/1.10-GCCcore-11.3.0                      
  libdrm/2.4.107-GCCcore-11.2.0
  libdrm/2.4.110-GCCcore-11.3.0                       
  libepoxy/1.5.8-GCCcore-11.2.0
  libepoxy/1.5.10-GCCcore-11.3.0                      
  libevent/2.1.12-GCCcore-10.2.0
  libevent/2.1.12-GCCcore-11.2.0
  libevent/2.1.12-GCCcore-11.3.0
  libevent/2.1.12-GCCcore-12.2.0                      
  libfabric/1.11.0-GCCcore-10.2.0
  libfabric/1.13.2-GCCcore-11.2.0
  libfabric/1.15.1-GCCcore-11.3.0
  libfabric/1.16.1-GCCcore-12.2.0                     
  libffi/3.2.1-GCCcore-8.3.0
  libffi/3.4.2-GCCcore-11.2.0
  libffi/3.4.2-GCCcore-11.3.0                         
  libgd/2.3.3-GCCcore-11.2.0
  libgeotiff/1.7.0-GCCcore-11.2.0
  libgeotiff/1.7.1-GCCcore-11.3.0                     
  libgit2/1.1.1-GCCcore-11.2.0
  libgit2/1.4.3-GCCcore-11.3.0                        
  libglvnd/1.3.3-GCCcore-11.2.0
  libglvnd/1.4.0-GCCcore-11.3.0                       
  libharu/2.3.0-foss-2021b
  libiconv/1.16-GCCcore-11.2.0
  libiconv/1.17-GCCcore-11.3.0                        
  libidn2/2.3.2-GCCcore-11.3.0
  libjpeg-turbo/2.0.6-GCCcore-11.2.0
  libjpeg-turbo/2.1.3-GCCcore-11.3.0                  
  libogg/1.3.5-GCCcore-11.2.0
  libogg/1.3.5-GCCcore-11.3.0                         
  libopus/1.3.1-GCCcore-11.3.0
  libpciaccess/0.14-GCCcore-8.3.0
  libpciaccess/0.16-GCCcore-10.2.0
  libpciaccess/0.16-GCCcore-11.2.0
  libpciaccess/0.16-GCCcore-11.3.0
  libpciaccess/0.17-GCCcore-12.2.0                    
  libpng/1.6.37-GCCcore-11.2.0
  libpng/1.6.37-GCCcore-11.3.0                        
  libreadline/8.0-GCCcore-8.3.0
  libreadline/8.0-GCCcore-10.2.0
  libreadline/8.1-GCCcore-11.2.0
  libreadline/8.1.2-GCCcore-11.3.0
  libreadline/8.2-GCCcore-12.2.0                      
  libsigc++/3.4.0-GCCcore-11.2.0
  libsndfile/1.0.31-GCCcore-11.2.0
  libsndfile/1.1.0-GCCcore-11.3.0                     
  libsodium/1.0.18-GCCcore-11.2.0
  libtirpc/1.3.2-GCCcore-11.2.0
  libtirpc/1.3.2-GCCcore-11.3.0                       
  libtool/2.4.6-GCCcore-8.3.0
  libtool/2.4.6-GCCcore-10.2.0
  libtool/2.4.6-GCCcore-11.2.0
  libtool/2.4.7-GCCcore-11.3.0
  libtool/2.4.7-GCCcore-12.2.0                        
  libunistring/1.0-GCCcore-11.2.0
  libunwind/1.5.0-GCCcore-11.2.0
  libunwind/1.6.2-GCCcore-11.3.0                      
  libuv/1.37.0-GCCcore-11.3.0
  libvorbis/1.3.7-GCCcore-11.2.0
  libvorbis/1.3.7-GCCcore-11.3.0                      
  libwebp/1.2.0-GCCcore-11.2.0
  libxc/5.2.3-GCC-11.2.0
  libxml++/2.42.1-GCC-11.2.0
  libxml2/2.9.9-GCCcore-8.3.0
  libxml2/2.9.10-GCCcore-10.2.0
  libxml2/2.9.10-GCCcore-11.2.0
  libxml2/2.9.13-GCCcore-11.3.0
  libxml2/2.10.3-GCCcore-12.2.0                       
  libxslt/1.1.34-GCCcore-11.2.0
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  lz4/1.9.3-GCCcore-11.3.0                            
  maeparser/1.3.0-gompi-2021b
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  make/4.3-GCCcore-11.3.0                             
  makeinfo/6.7-GCCcore-8.3.0-minimal
  makeinfo/6.7-GCCcore-10.2.0-minimal                 
  matplotlib/2.2.5-foss-2021b-Python-2.7.18
  matplotlib/3.4.3-foss-2021b
  matplotlib/3.5.2-foss-2021b                         
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  minimap2/2.24-GCCcore-11.2.0                        
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  ncbi-vdb/2.11.2-gompi-2021b
  ncbi-vdb/3.0.2-gompi-2022a                          
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  ncurses/6.1-GCCcore-8.3.0
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  ncurses/6.3-GCCcore-11.3.0
  ncurses/6.3-GCCcore-12.2.0
  ncurses/6.3                                         
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  netCDF/4.9.0-gompi-2022a                            
  nettle/3.7.3-GCCcore-11.2.0
  nettle/3.8-GCCcore-11.3.0                           
  networkx/2.6.3-foss-2021b
  networkx/2.8.4-foss-2022a                           
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  nsync/1.25.0-GCCcore-11.3.0                         
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  numactl/2.0.14-GCCcore-11.3.0
  numactl/2.0.16-GCCcore-12.2.0                       
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  picard/2.27.5-Java-15                               
  pigz/2.6-GCCcore-11.2.0
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  pixman/0.40.0-GCCcore-11.3.0                        
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  pkg-config/0.29.2-GCCcore-11.3.0                    
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  pkgconf/1.8.0-GCCcore-11.3.0
  pkgconf/1.8.0
  pkgconf/1.9.3-GCCcore-12.2.0                        
  pkgconfig/1.5.5-GCCcore-11.2.0-python
  pkgconfig/1.5.5-GCCcore-11.3.0-python               
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  pretty-yaml/21.10.1-GCCcore-11.2.0
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  prodigal/2.6.3-GCCcore-11.3.0                       
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  protobuf/3.17.3-GCCcore-11.2.0
  protobuf/3.19.4-GCCcore-11.3.0                      
  purge_dups/1.2.5-foss-2021b
  pyBigWig/0.3.18-foss-2021b
  pybedtools/0.8.2-GCC-11.2.0
  pybind11/2.7.1-GCCcore-11.2.0-Python-2.7.18
  pybind11/2.7.1-GCCcore-11.2.0
  pybind11/2.9.2-GCCcore-11.3.0                       
  pytest-xdist/2.5.0-GCCcore-11.2.0
  python-isal/0.11.1-GCCcore-11.2.0
  python-isal/1.1.0-GCCcore-11.2.0                    
  re2c/2.2-GCCcore-11.2.0
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  scikit-image/0.19.1-foss-2021b
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  snappy/1.1.9-GCCcore-11.3.0                         
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  tRNAscan-SE/2.0.12-GCC-11.2.0                       
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  tbb/2020.3-GCCcore-11.2.0
  tbb/2021.5.0-GCCcore-11.3.0                         
  tcsh/6.24.01-GCCcore-11.2.0
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  tqdm/4.62.3-GCCcore-11.2.0
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  ucsc/434
  ucsc/443                                            
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  util-linux/2.38-GCCcore-11.3.0                      
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  xorg-macros/1.19.3-GCCcore-11.3.0
  xorg-macros/1.19.3-GCCcore-12.2.0                   
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  zlib/1.2.11-GCCcore-10.2.0
  zlib/1.2.11-GCCcore-11.2.0
  zlib/1.2.11
  zlib/1.2.12-GCCcore-11.3.0
  zlib/1.2.12-GCCcore-12.2.0
  zlib/1.2.12                                         
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  zstd/1.5.2-GCCcore-11.3.0