ICommands-Sapelo2: Difference between revisions
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[[Category: | [[Category:Sapelo2]][[Category:Software]][[Category:Tools]] | ||
=== Category === | === Category === | ||
| Line 11: | Line 11: | ||
=== Version === | === Version === | ||
4. | 4.2.8 | ||
=== Author / Distributor === | === Author / Distributor === | ||
| Line 25: | Line 25: | ||
Also refer to [[Transferring Files]]. | Also refer to [[Transferring Files]]. | ||
* version 4. | * version 4.2.8 is installed on Sapelo2 IRODS '''transfer node''' (xfer-irods.gacrc.uga.edu). Please note that this command is not available on the other transfer nodes. | ||
Please log on a Sapelo2 transfer node to use iCommands, for example: | Please log on a Sapelo2 transfer node xfer-irods.gacrc.uga.edu to use iCommands, for example: | ||
<pre class="gscript"> | <pre class="gscript"> | ||
ssh username@xfer.gacrc.uga.edu | ssh username@xfer-irods.gacrc.uga.edu | ||
</pre> | </pre> | ||
Once you logged on | Once you logged on this specific transfer node, you can initialize and start the connection to iRODS by using the iinit command, for example: | ||
<pre class="gscript"> | <pre class="gscript"> | ||
| Line 42: | Line 42: | ||
Enter the port number: 1247 | Enter the port number: 1247 | ||
Enter your irods user name: [yourIRodsUserName] | Enter your irods user name: [yourIRodsUserName] | ||
Enter your irods zone: [yourIRodsZone] | |||
Enter your current iRODS password: [yourIRodsPassword] | |||
</pre> | </pre> | ||
Please replace [yourIRodsUserName], [yourIRodsZone], and [yourIRodsPassword] with your own IRods username, zone name, and login password. | |||
If the login succeeds and connection is built, you can use other iCommands, like iget/iput, etc., to download/upload the file/directory between iRODS and your current working directory on the cluster. | |||
=== Documentation === | === Documentation === | ||
| Line 54: | Line 58: | ||
=== Installation === | === Installation === | ||
Installed on Sapelo2 transfer | Installed on Sapelo2 transfer node xfer-irods.gacrc.uga.edu | ||
=== System === | === System === | ||
64-bit Linux | 64-bit Linux | ||
Latest revision as of 10:08, 12 January 2021
Category
Tools
Program On
Sapelo2
Version
4.2.8
Author / Distributor
Please see iCommands
Description
From iCommands: "iCommands is a collection of commands for Linux and Mac OS operating systems that are used in the iRODS system to interact with the CyVerse Data Store."
Running Program
Also refer to Transferring Files.
- version 4.2.8 is installed on Sapelo2 IRODS transfer node (xfer-irods.gacrc.uga.edu). Please note that this command is not available on the other transfer nodes.
Please log on a Sapelo2 transfer node xfer-irods.gacrc.uga.edu to use iCommands, for example:
ssh username@xfer-irods.gacrc.uga.edu
Once you logged on this specific transfer node, you can initialize and start the connection to iRODS by using the iinit command, for example:
iinit One or more fields in your iRODS environment file (irods_environment.json) are missing; please enter them. Enter the host name (DNS) of the server to connect to: data.cyverse.org Enter the port number: 1247 Enter your irods user name: [yourIRodsUserName] Enter your irods zone: [yourIRodsZone] Enter your current iRODS password: [yourIRodsPassword]
Please replace [yourIRodsUserName], [yourIRodsZone], and [yourIRodsPassword] with your own IRods username, zone name, and login password.
If the login succeeds and connection is built, you can use other iCommands, like iget/iput, etc., to download/upload the file/directory between iRODS and your current working directory on the cluster.
Documentation
Please see iCommands
Installation
Installed on Sapelo2 transfer node xfer-irods.gacrc.uga.edu
System
64-bit Linux