Software2: Difference between revisions
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| [[4p-Sapelo2 |4p]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[4p-Sapelo2 |4p]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| <span id ="A"></span>[[ABySS-Sapelo|ABySS]] || 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <span id ="A"></span>[[ABySS-Sapelo|ABySS]] || 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[ABySS-Sapelo2|ABySS]] || 1.9.0, 2.0.2, 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[ABySS-Sapelo2|ABySS]] || 1.9.0, 2.0.2, 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |||
| [[ADMIXTURE-Sapelo2|ADMIXTURE]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |- | ||
| [[AFNI-Sapelo2|AFNI]] || 17.3.05 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[AFNI-Sapelo2|AFNI]] || 17.3.05 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[BCFtools-Sapelo2|BCFtools]] || 1.3.1, 1.6, 1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[BCFtools-Sapelo2|BCFtools]] || 1.3.1, 1.6, 1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[BCFtools-Teaching|BCFtools]] || 1. | | [[BCFtools-Teaching|BCFtools]] || 1.3.1, 1.6, 1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[BEAST-Sapelo|BEAST]] || 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[BEAST-Sapelo|BEAST]] || 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[BP&P-Sapelo|BP&P]] || 4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[BP&P-Sapelo|BP&P]] || 4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[BS Seeker2-Sapelo|BS]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[BS Seeker2-Sapelo|BS Seeker2]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[BUSCO-Sapelo|BUSCO]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[BUSCO-Sapelo|BUSCO]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[bowtie2-Sapelo2|bowtie2]] || 2.2.3, 2.3.3, 2.3.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[bowtie2-Sapelo2|bowtie2]] || 2.2.3, 2.3.3, 2.3.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[Bowtie2-Teaching|Bowtie2]] || 2.3 | | [[Bowtie2-Teaching|Bowtie2]] || 2.2.3, 2.3.3, 2.3.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[bowtie-Sapelo|bowtie]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[bowtie-Sapelo|bowtie]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[breakdancer-Sapelo|breakdancer]] || 1.1.2_2013_03_08 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[breakdancer-Sapelo|breakdancer]] || 1.1.2_2013_03_08 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[bwa-Sapelo|Burrows-Wheeler]] || 0.7.10, 0.7.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[bwa-Sapelo|Burrows-Wheeler Aligner (BWA)]] || 0.7.10, 0.7.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[busco-Sapelo2|busco]] || 3.0.2, 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[busco-Sapelo2|busco]] || 3.0.2, 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[cap3-Sapelo|cap3]] || 03/09/2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[cap3-Sapelo|cap3]] || 03/09/2015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[cd-hit-Sapelo|cdhit]] || 4.6.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[cd-hit-Sapelo|cdhit]] || 4.6.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[CytoScape-Sapelo|CytoScape]] || 3.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[CytoScape-Sapelo|CytoScape]] || 3.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| <span id ="D"></span>[[DBG2OLC-Teaching|DBG2OLC]] || 20170208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | | <span id ="D"></span>[[DBG2OLC-Sapelo2|DBG2OLC]] || 20170208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |||
| [[DBG2OLC-Teaching|DBG2OLC]] || 20170208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |- | ||
| [[DDSCAT-Sapelo2|DDSCAT]] || 7.3.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[DDSCAT-Sapelo2|DDSCAT]] || 7.3.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[EMBOSS-Teaching|EMBOSS]] || 6.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | | [[EMBOSS-Teaching|EMBOSS]] || 6.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[EMMAX-Sapelo2|EMMAX]] || beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[EMMAX-Sapelo2|EMMAX beta]] || beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[EPIG-Seq-Sapelo |EPIG-Seq]] || v01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[EPIG-Seq-Sapelo |EPIG-Seq]] || v01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[Exonerate-Sapelo2 |Exonerate]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[Exonerate-Sapelo2 |Exonerate]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |||
| [[Exonerate-Teaching|Exonerate]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |- | ||
| [[Expander-Sapelo|Expander]] || 7.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[Expander-Sapelo|Expander]] || 7.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[FASTX-Toolkit-Sapelo2|FASTX-Toolkit]] || 0.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[FASTX-Toolkit-Sapelo2|FASTX-Toolkit]] || 0.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[FFTW-Sapelo|FFTW]] || 2.1.5, 3.3.4 || [[:Category:Math|Math]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[FFTW-Sapelo|FFTW]] || 2.1.5, 3.3.4 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[FFTW-Sapelo2|FFTW]] || 3.3.4, 3.3.6, 3.3.7 || [[:Category:Math|Math]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[FFTW-Sapelo2|FFTW]] || 3.3.4, 3.3.6, 3.3.7 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[FFmpeg-Sapelo|FFmpeg]] || 2.8.2 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[FFmpeg-Sapelo|FFmpeg]] || 2.8.2 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[FLASH-Sapelo2|FLASH]] || 1.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[FLASH-Sapelo2|FLASH]] || 1.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[FLTK-Sapelo2|FLTK]] || 1.3.4 || [[:Category:Other | | [[FLTK-Sapelo2|FLTK]] || 1.3.4 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[Fast-Plast-Sapelo2|Fast-Plast]] || 1.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[Fast-Plast-Sapelo2|Fast-Plast]] || 1.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[FriBidi-Sapelo2|FriBidi]] || 1.0.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[FriBidi-Sapelo2|FriBidi]] || 1.0.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| <span id ="G"></span>[[GAG-Teaching|GAG]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | | <span id ="G"></span>[[GAG-Sapelo2|GAG]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |||
| [[GAG-Teaching|GAG]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |- | ||
| [[GAMESS-Sapelo|GAMESS]] || 5Dec2014 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[GAMESS-Sapelo|GAMESS]] || 5Dec2014 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[GAMESS-Sapelo2|GAMESS]] || 14Feb2018 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[GAMESS-Sapelo2|GAMESS]] || 14Feb2018 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[GAP-Sapelo|GAP]] || 4.8.7 || [[:Category:Other | | [[GAP-Sapelo|GAP]] || 4.8.7 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[GAPIT-Sapelo2|GAPIT]] || 20180524 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[GAPIT-Sapelo2|GAPIT]] || 20180524 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[GATK-Sapelo2|GATK]] || 3.4-0, 3.8-0, 4.0.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[GATK-Sapelo2|GATK]] || 3.4-0, 3.8-0, 4.0.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[GATK-Teaching|GATK]] || 3. | | [[GATK-Teaching|GATK]] || 3.4-0, 3.8-0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[GAUSSIAN-Sapelo|GAUSSIAN]] || 09 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[GAUSSIAN-Sapelo|GAUSSIAN]] || 09 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[GMPFRXX-Sapelo|GMPFRXX]] || 20081116 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[GMPFRXX-Sapelo|GMPFRXX]] || 20081116 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[GNU Compilers-Sapelo|GNU]] || 4.4.7, 4.7.4, 5.3.0 || [[:Category:Compiler|Compiler]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[GNU Compilers-Sapelo|GNU Compilers]] || 4.4.7, 4.7.4, 5.3.0 || [[:Category:Compiler|Compiler]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[GObject-Introspection-Sapelo2|GObject-Introspection]] || 1.49.1, 1.54.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[GObject-Introspection-Sapelo2|GObject-Introspection]] || 1.49.1, 1.54.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[GSL-Sapelo|GSL]] || 1.16 || [[:Category:Math|Math]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[GSL-Sapelo|GSL]] || 1.16 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[GSL-Sapelo2|GSL]] || 1.16, 2.1, 2.3. 2.4 || [[:Category:Math|Math]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[GSL-Sapelo2|GSL]] || 1.16, 2.1, 2.3. 2.4 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[GStreamer-Sapelo2|GStreamer]] || 1.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[GStreamer-Sapelo2|GStreamer]] || 1.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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|- | |- | ||
| [[GapFiller-Sapelo|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[GapFiller-Sapelo|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |||
| [[GapFiller-Sapelo2|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |- | ||
| [[GapFiller-Teaching|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | | [[GapFiller-Teaching|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
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|- | |- | ||
| [[HISAT2-Sapelo2|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[HISAT2-Sapelo2|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |||
| [[HISAT2-Teaching|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |- | ||
| [[HMMER-Sapelo2|HMMER]] || 3.1b2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[HMMER-Sapelo2|HMMER]] || 3.1b2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[Infernal-Sapelo2|Infernal]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[Infernal-Sapelo2|Infernal]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[Intel Compilers-Sapelo|Intel]] || 14.0.0, 15.0.2 || [[:Category:Compiler|Compiler]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[Intel Compilers-Sapelo|Intel Compilers]] || 14.0.0, 15.0.2 || [[:Category:Compiler|Compiler]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[iprscan-Sapelo|iprscan]] || 5.16-55.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[iprscan-Sapelo|iprscan (InterProScan)]] || 5.16-55.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[iprscan-Sapelo2|iprscan]] || 5.29-68.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[iprscan-Sapelo2|iprscan (InterProScan)]] || 5.29-68.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[ipyrad-Sapelo|ipyrad]] || 0.3.7, 0.5.15, 0.7.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[ipyrad-Sapelo|ipyrad]] || 0.3.7, 0.5.15, 0.7.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[ipyrad-Sapelo2|ipyrad]] || 0.7.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[ipyrad-Sapelo2|ipyrad]] || 0.7.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |||
| [[ipyrad-Teaching|Ipyrad]] || 0.7.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |- | ||
| [[IsoSeq_SA3nUP-Sapelo|IsoSeq_SA3nUP]] || 09272017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[IsoSeq_SA3nUP-Sapelo|IsoSeq_SA3nUP]] || 09272017 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Line 729: | Line 735: | ||
| [[Java-Sapelo2|Java]] || 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[Java-Sapelo2|Java]] || 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[Java-Teaching|Java]] || 1.8. | | [[Java-Teaching|Java]] || 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[Jellyfish-Sapelo|Jellyfish]] || 2.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[Jellyfish-Sapelo|Jellyfish]] || 2.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Line 735: | Line 741: | ||
| [[Jellyfish-Sapelo2|Jellyfish]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[Jellyfish-Sapelo2|Jellyfish]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[Jupyter-Sapelo|Jupyter]] || 2.5.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[Jupyter-Sapelo|Jupyter Notebook]] || 2.5.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| <span id ="K"></span>[[KAT-Sapelo|KAT]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <span id ="K"></span>[[KAT-Sapelo|KAT]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Line 752: | Line 758: | ||
|- | |- | ||
| [[KmerGenie-Sapelo|KmerGenie]] || 1.7016 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[KmerGenie-Sapelo|KmerGenie]] || 1.7016 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |||
| [[KmerGenie-Teaching|KmerGenie]] || 1.7044 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |- | ||
| [[Kraken-Sapelo|Kraken]] || 0.10.5-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[Kraken-Sapelo|Kraken]] || 0.10.5-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Line 798: | Line 806: | ||
|- | |- | ||
| [[librosa-Sapelo|librosa]] || 0.4.3 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[librosa-Sapelo|librosa]] || 0.4.3 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[lmod|lmod]] || 5.8 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[lmod|lmod]] || 5.8 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Line 819: | Line 823: | ||
| [[MAFFT-Sapelo2|MAFFT]] || 7.273, 7.313 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[MAFFT-Sapelo2|MAFFT]] || 7.273, 7.313 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[MAFFT-Teaching|MAFFT]] || 7. | | [[MAFFT-Teaching|MAFFT]] || 7.130, 7.273, 7.313 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[MCL-Sapelo2|MCL]] || 14.137 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[MCL-Sapelo2|MCL]] || 14.137 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
Line 849: | Line 853: | ||
| [[MITE-Hunter-Sapelo2|MITE-Hunter]] || 11-2011 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[MITE-Hunter-Sapelo2|MITE-Hunter]] || 11-2011 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[MKL-Sapelo|MKL]] || 11.1, 11.2 || [[:Category:Math|Math]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[MKL-Sapelo|MKL]] || 11.1, 11.2 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[MOABS-Sapelo|MOABS]] || 1.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[MOABS-Sapelo|MOABS]] || 1.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Line 903: | Line 907: | ||
| [[Maker-Teaching|Maker]] || 2.31.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | | [[Maker-Teaching|Maker]] || 2.31.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[MatLab-Sapelo|Matlab]] || R2015aSP1, R2015b, R2016b || [[:Category: | | [[MatLab-Sapelo|Matlab]] || R2015aSP1, R2015b, R2016b || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[Mauve-Sapelo|Mauve]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[Mauve-Sapelo|Mauve]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Line 989: | Line 993: | ||
| [[NASM-Sapelo2|NASM]] || 2.11, 2.12, 2.13 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[NASM-Sapelo2|NASM]] || 2.11, 2.12, 2.13 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[NCBI Blast +-Sapelo|NCBI]] || 2.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[NCBI Blast +-Sapelo|NCBI Blast +]] || 2.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |||
| [[NCBI Blast-Sapelo|NCBI Blast]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |- | ||
| [[NCBIBLAST+-Sapelo|NCBIBLAST+]] || 2.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[NCBIBLAST+-Sapelo|NCBIBLAST+]] || 2.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Line 997: | Line 1,003: | ||
| [[NETCDF-Sapelo|NETCDF]] || 3.6.3, 4.1.3, 4.3.2 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[NETCDF-Sapelo|NETCDF]] || 3.6.3, 4.1.3, 4.3.2 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[NGS-QC-Toolkit-Sapelo|NGS-QC]] || 2.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[NGS-QC-Toolkit-Sapelo|NGS-QC Toolkit]] || 2.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[NGS-Sapelo2|NGS]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[NGS-Sapelo2|NGS]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
Line 1,035: | Line 1,041: | ||
| [[Oases-Sapelo2|Oases]] || 0.2.08, 0.2.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[Oases-Sapelo2|Oases]] || 0.2.08, 0.2.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[Octave-Sapelo|Octave]] || 4.0.3 || [[:Category: | | [[Octave-Sapelo|Octave]] || 4.0.3 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[Oligotyping-Sapelo|Oligotyping]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[Oligotyping-Sapelo|Oligotyping]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Line 1,081: | Line 1,087: | ||
| [[PEAR-Sapelo2|PEAR]] || 0.9.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[PEAR-Sapelo2|PEAR]] || 0.9.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[PETSc-Sapelo|PETSc]] || 3.7.6 || [[:Category:Math|Math]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[PETSc-Sapelo|PETSc]] || 3.7.6 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[PETSc-Sapelo2|PETSc]] || 3.8.4 || [[:Category:Math|Math]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[PETSc-Sapelo2|PETSc]] || 3.8.4 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[PGI Compilers-Sapelo|PGI]] || 2014 || [[:Category:Compiler|Compiler]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[PGI Compilers-Sapelo|PGI Compilers]] || 2014 || [[:Category:Compiler|Compiler]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[PHASE-Sapelo |PHASE]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[PHASE-Sapelo |PHASE]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Line 1,244: | Line 1,250: | ||
|- | |- | ||
| <span id ="Q"></span>[[QIIME2-Sapelo2|QIIME2]] || 2018.2, 2018.4, 2018.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | <span id ="Q"></span>[[QIIME2-Sapelo2|QIIME2]] || 2018.2, 2018.4, 2018.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |||
| [[QIIME2-Teaching|QIIME2]] || 2018.4, 2018.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |- | ||
| [[QUAST-Sapelo|QUAST]] || 4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[QUAST-Sapelo|QUAST]] || 4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Line 1,257: | Line 1,265: | ||
| [[Qualimap2-Sapelo2|Qualimap2]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[Qualimap2-Sapelo2|Qualimap2]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[Quantum Espresso-Sapelo|Quantum]] || 5.4.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[Quantum Espresso-Sapelo|Quantum Espresso]] || 5.4.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[Quantum Espresso-Sapelo2|Quantum]] || 6.2.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[Quantum Espresso-Sapelo2|Quantum Espresso]] || 6.2.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| <span id ="R"></span>[[R-Sapelo |R]] || 3.1.2, 3.2.1, 3.2.3, 3.3.1 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | <span id ="R"></span>[[R-Sapelo |R]] || 3.1.2, 3.2.1, 3.2.3, 3.3.1 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Line 1,381: | Line 1,389: | ||
| [[SMRTLINK-Sapelo2|SMRTLINK]] || 5.1.0.26412 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[SMRTLINK-Sapelo2|SMRTLINK]] || 5.1.0.26412 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[SMRTLINK-Teaching|SMRTLINK]] || 5.1. | | [[SMRTLINK-Teaching|SMRTLINK]] || 5.0.1.9585, 5.1.0.26412 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[SMRTanalysis-Sapelo|SMRTanalysis]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[SMRTanalysis-Sapelo|SMRTanalysis]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Line 1,418: | Line 1,426: | ||
|- | |- | ||
| [[SRAToolKit-Sapelo2 |SRAToolKit]] || 2.8.2-1, 2.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[SRAToolKit-Sapelo2 |SRAToolKit]] || 2.8.2-1, 2.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |||
| [[SSAHA2-Sapelo2 |SSAHA2]] || 2.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |- | ||
| [[SSPACE-Sapelo|SSPACE]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[SSPACE-Sapelo|SSPACE]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Line 1,431: | Line 1,441: | ||
| [[STAR-Sapelo2|STAR]] || 2.5.3a, 2.6.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[STAR-Sapelo2|STAR]] || 2.5.3a, 2.6.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[STAR-Teaching|STAR]] || 2. | | [[STAR-Teaching|STAR]] || 2.5.3a, 2.6.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[SUNTANS-Sapelo|SUNTANS]] || 20150923 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[SUNTANS-Sapelo|SUNTANS]] || 20150923 || [[:Category:Other|Other]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Line 1,461: | Line 1,471: | ||
| [[samtools-Sapelo|samtools]] || 1.3.1 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[samtools-Sapelo|samtools]] || 1.3.1 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[sbt-Sapelo|sbt]] || 0.13.12, 1.0.2 || [[:Category: | | [[sbt-Sapelo|sbt]] || 0.13.12, 1.0.2 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[sbt-Sapelo2|sbt]] || 1.1.1 || [[:Category: | | [[sbt-Sapelo2|sbt]] || 1.1.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[ScaLAPACK-Sapelo|ScaLAPACK]] || 2.0.2 || [[:Category:Math|Math]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[ScaLAPACK-Sapelo|ScaLAPACK]] || 2.0.2 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[scala-Sapelo|scala]] || 2.10.6, 2.11.7, 2.12.0-RC1, 2.12.1 || [[:Category: | | [[scala-Sapelo|scala]] || 2.10.6, 2.11.7, 2.12.0-RC1, 2.12.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[scala-Sapelo2|scala]] || 2.12.4 || [[:Category: | | [[scala-Sapelo2|scala]] || 2.12.4 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[scalpel-Sapelo|scalpel]] || 0.5.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[scalpel-Sapelo|scalpel]] || 0.5.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
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|- | |- | ||
| [[StringTie-Sapelo2|StringTie]] || 1.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[StringTie-Sapelo2|StringTie]] || 1.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |||
| [[StringTie-Teaching|StringTie]] || 1.3.3, 1.3.4d || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |- | ||
| [[structure-Sapelo|structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[structure-Sapelo|structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[tRNAscan-SE-Sapelo2|TRNAscan-SE]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[tRNAscan-SE-Sapelo2|TRNAscan-SE]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[TRF-Sapelo|Tandem]] || 4.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[TRF-Sapelo|Tandem Repeats Finder]] || 4.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[tassel-Sapelo|tassel]] || 5.2.42 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[tassel-Sapelo|tassel]] || 5.2.42 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[Trimmomatic-Sapelo2|Trimmomatic]] || 0.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[Trimmomatic-Sapelo2|Trimmomatic]] || 0.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |||
| [[Trimmomatic-Teaching|Trimmomatic]] || 0.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |- | ||
| [[Trinity-Sapelo|Trinity]] || 2.06 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[Trinity-Sapelo|Trinity]] || 2.06 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[WRF-Sapelo2|WRF]] || 3.6.1, 3.8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[WRF-Sapelo2|WRF]] || 3.6.1, 3.8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[WU Blast-Sapelo|WU]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[WU Blast-Sapelo|WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[WU Blast-Sapelo2|WU]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[WU Blast-Sapelo2|WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[wgs-Sapelo|wgs]] || 8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[wgs-Sapelo|wgs]] || 8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[zlib-Sapelo|zlib]] || 1.2.5, 1.2.8 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[zlib-Sapelo|zlib]] || 1.2.5, 1.2.8 || [[:Category:Library|Library]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
<!--LIST END--> | |||
| | |} | ||
[[#top|Back To Top]] [[File:Up20.png|20px|link=#top]] | |||
[[Category:Sapelo2old]][[Category:Sapelo]][[Category:Teaching]][[Category:Software]] | |||
Latest revision as of 11:27, 26 October 2020
Below is a partial list of software packages installed on Sapelo, Sapelo2, Teaching (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2/Teaching, along with a short description, please run the following command on Sapelo2/Teaching:
module spider
You can also use the command above to search for a specific application. For more information, please see Lmod.
Installed Software List
Last updated 2020-10-26. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z