YH-S2-Template: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| Line 21: | Line 21: | ||
=== Running Program === | === Running Program === | ||
Please refer to [[Running Jobs on Sapelo2]], [Running_Jobs_on_Sapelo2#Running_an_X-windows_application | Run X window Jobs]] and [[Running_Jobs_on_Sapelo2#Running_an_Interactive_Job | Run interactive Jobs]] for generic details about running jobs at Sapelo2. | Please refer to [[Running Jobs on Sapelo2]], [[Running_Jobs_on_Sapelo2#Running_an_X-windows_application | Run X window Jobs]] and [[Running_Jobs_on_Sapelo2#Running_an_Interactive_Job | Run interactive Jobs]] for generic details about running jobs at Sapelo2. | ||
The last version of this application is at /usr/local/apps/gb/<!-- LC_NAME BEGIN -->trinity<!-- LC_NAME END -->/<!-- VERSION BEGIN -->2.0.6<!-- VERSION END --> | The last version of this application is at /usr/local/apps/gb/<!-- LC_NAME BEGIN -->trinity<!-- LC_NAME END -->/<!-- VERSION BEGIN -->2.0.6<!-- VERSION END --> | ||
Revision as of 13:26, 1 August 2018
Category
Bioinformatics
Program On
Sapelo2
Version
2.0.6
Author / Distributor
Trinity
Description
"" More details are at Trinity
Running Program
Please refer to Running Jobs on Sapelo2, Run X window Jobs and Run interactive Jobs for generic details about running jobs at Sapelo2.
The last version of this application is at /usr/local/apps/gb/trinity/2.0.6
Here is an example of a shell script, sub.sh, to run on at the batch queue:
#PBS -S /bin/bash #PBS -N j_<!-- NAME BEGIN -->trinity<!-- NAME END --> #PBS -q batch #PBS -l nodes=1:ppn=1:AMD #PBS -l walltime=480:00:00 #PBS -l mem=10gb cd $PBS_O_WORKDIR <!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END --> [options]
Here is an example of job submission command:
qsub ./sub.sh
Documentation
<!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END -->
Installation
Source code is obtained from Trinity
System
64-bit Linux