PfamDB-Sapelo2: Difference between revisions
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Revision as of 10:26, 28 June 2018
A database for Hmmer and Pfam_scan program
There are multiple versions under /db/pfam
/db/pfam/
The command generated the data is documented at UGA file sitting at the same directory with data:
formatdb -i Pfam-A.fasta -n Pfam-A -t Pfam-A -l Pfam-A.log -p T formatdb -i Pfam-B.fasta -n Pfam-A -t Pfam-A -l Pfam-A.log -p T ml HMMER/3.1b2-foss-2016b hmmpress Pfam-A.hmm hmmpress Pfam-B.hmm ml WU-Blast/2.2.6-foss-2016b xdformat -p -x Pfam-A.fasta xdformat -p Pfam-B.fasta
version built with hmmer 3.0 (Pfam_scan friendly)
/db/pfam/27.0-hmmer3.0/Pfam-A /db/pfam/27.0-hmmer3.0/Pfam-B /db/pfam/27.0-hmmer3.0/Pfam-A.hmm /db/pfam/27.0-hmmer3.0/Pfam-B.hmm
Databases are download install files from sanger website.