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| [[SAMtools-Teaching|SAMtools]] || 1.6 , 1.3.1, 1.3.1, 0.1.19|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | | [[SAMtools-Teaching|SAMtools]] || 1.6 , 1.3.1, 1.3.1, 0.1.19|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[SMRTLINK-Teaching|SMRTLINK]] || 5.1.0.26412 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | | [[SMRTLINK-Teaching|SMRTLINK]] || 5.1.0.26412 , 5.0.1.9585|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[Stacks-Teaching|Stacks]] || 2.0 , 1.48|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | | [[Stacks-Teaching|Stacks]] || 2.0 , 1.48|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
Revision as of 13:39, 9 August 2018
Installed Software List
Last updated 2018-08-09. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
| Name | Version | Category | Cluster | |
|---|---|---|---|---|
| -Teaching | [[:Category:|Category:]] | Teaching | 
| |
| BCFtools | 1.8 , 1.6, 1.3.1 | Bioinformatics | Teaching |
|
| Biopython | 1.68 , 1.68 | Bioinformatics | Teaching |
|
| Bowtie2 | 2.3.4.1 , 2.3.3, 2.2.3 | Bioinformatics | Teaching |
|
| BWA | 0.7.17 , 0.7.15 | Bioinformatics | Teaching |
|
| Canu | 1.7 , 1.6, 1.5, 1.4 | Bioinformatics | Teaching |
|
| GATK | 3.8-0 , 3.4-0 | Bioinformatics | Teaching |
|
| Java | 1.8.0_144 , 1.8.0_141, 1.8.0_121, 1.8.0_112, 1.8.0_92 | Programming | Teaching |
|
| MAFFT | 7.313 , 7.273, 7.130 | Bioinformatics | Teaching |
|
| Perl | 5.26.1 , 5.26.1, 5.26.0, 5.24.1, 5.24.0, 5.20.3 | Programming | Teaching |
|
| Python | 3.6.4 , 3.5.2, 2.7.14, 2.7.14, 2.7.14, 2.7.14, 2.7.14, 2.7.12 | Programming | Teaching |
|
| RAxML | 8.2.11 , 8.2.11 | Bioinformatics | Teaching |
|
| SAMtools | 1.6 , 1.3.1, 1.3.1, 0.1.19 | Bioinformatics | Teaching |
|
| SMRTLINK | 5.1.0.26412 , 5.0.1.9585 | Bioinformatics | Teaching |
|
| Stacks | 2.0 , 1.48 | Bioinformatics | Teaching |
|
| STAR | 2.6.0c , 2.5.3a | Bioinformatics | Teaching |
|
| Zbar | 0.10 | Graphics | Sapelo |
|
| zlib | 1.2.5, 1.2.8 | Library | Sapelo |
|
| Zorro | 2.2 | Bioinformatics | Zcluster |
|