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| [[PyTorch-Sapelo2|PyTorch]] || 0.3.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[PyTorch-Sapelo2|PyTorch]] || 0.3.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| <span id ="Q"></span>[[QIIME2-Sapelo2|QIIME2]] || 2018.2, 2018.4, 2018.6, 2018.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="Q"></span>[[QIIME2-Sapelo2|QIIME2]] || 2018.2, 2018.4, 2018.6, 2018.8, 2018.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[QIIME2-Teaching|QIIME2]] || 2018.4, 2018.6, 2018.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| [[QIIME2-Teaching|QIIME2]] || 2018.4, 2018.6, 2018.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  

Revision as of 10:49, 10 December 2018

Below is a partial list of software packages installed on Sapelo2, Teaching (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2/Teaching, along with a short description, please run the following command on Sapelo2/Teaching: 

module spider

You can also use the command above to search for a specific application. For more information, please see Lmod.

Installed Software List

Last updated 2018-12-10. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name Version Category Cluster Top
4p 1.0 Bioinformatics Sapelo2 Up20.png
ABySS 1.9.0, 2.0.2, 2.1.0 Bioinformatics Sapelo2 Up20.png
ADMIXTURE 1.3.0 Bioinformatics Sapelo2 Up20.png
aeneas 1.7.3 Other Sapelo2 Up20.png
AFNI 17.3.05 Other Sapelo2 Up20.png
Albacore 2.3.4-cp35 Bioinformatics Sapelo2 Up20.png
AlignGraph 20180709 Bioinformatics Sapelo2 Up20.png
AlleleSeq_pipeline 1.2a Bioinformatics Sapelo2 Up20.png
Allim 1.2 Bioinformatics Sapelo2 Up20.png
AMBER 14 Chemistry Sapelo2 Up20.png
AMOS 3.1.0 Bioinformatics Sapelo2 Up20.png
Anaconda2 5.0.1 Programming Sapelo2 Up20.png
Anaconda3 5.0.1 Programming Sapelo2 Up20.png
annovar 2017Jul16 Bioinformatics sapelo2 Up20.png
anvi'o 4, 5.1 Bioinformatics sapelo2 Up20.png
Aragorn 1.2.38 Bioinformatics Sapelo2 Up20.png
Arlequin 3.5.2.2 Bioinformatics Sapelo2 Up20.png
ART 20160605 Bioinformatics Sapelo2 Up20.png
Artemis 17.0.1 Bioinformatics Sapelo2 Up20.png
Artemis 17.0.1 Bioinformatics Teaching Up20.png
ASTRAL 5.6.1 Bioinformatics Sapelo2 Up20.png
ATk 2.22.0 Other Sapelo2 Up20.png
ATLAS 3.10.2 Other Sapelo2 Up20.png
AUGUSTUS 3.2.3 Bioinformatics Sapelo2 Up20.png
AUGUSTUS 3.2.3 Bioinformatics Teaching Up20.png
BamTools 2.4.1 Bioinformatics Sapelo2 Up20.png
Barrnap 0.9 Bioinformatics Sapelo2 Up20.png
basespace-cli 0.9.17 Bioinformatics Sapelo2 Up20.png
BayesAss 3.0.4 Bioinformatics Sapelo2 Up20.png
Bazel 0.8.1, 0.11.1 Other Sapelo2 Up20.png
BBMap 37.67 Bioinformatics Sapelo2 Up20.png
BCFtools 1.1, 1.3.1, 1.6, 1.8, 1.9 Bioinformatics Sapelo2 Up20.png
BCFtools 1.3.1, 1.6, 1.8 Bioinformatics Teaching Up20.png
bcl2fastq 2.20.0 Bioinformatics Sapelo2 Up20.png
Beast 1.8.4, 1.10.1, 1.10.3, 1.10.4, 2.4.8pre, 2.4.8, 2.5.0 Bioinformatics Sapelo2 Up20.png
BEDOPS 2.4.30 Bioinformatics Sapelo2 Up20.png
BEDTools 2.26.0 Bioinformatics Sapelo2 Up20.png
BEDTools 2.26.0 Bioinformatics Teaching Up20.png
bioawk 1.0 Bioinformatics Sapelo2 Up20.png
BioKanga 21.0.0 Bioinformatics Sapelo2 Up20.png
BionanoSolve 3.2.1-04122018, 3.2.2-08222018 Bioinformatics Sapelo2 Up20.png
BioPerl 1.7.1 Bioinformatics Sapelo2 Up20.png
BioPerl 1.7.1 Bioinformatics Teaching Up20.png
BioPython 1.68 Bioinformatics Sapelo2 Up20.png
Biopython 1.68 Bioinformatics Teaching Up20.png
Bismark 0.20.0 Bioinformatics Sapelo2 Up20.png
Bison 2.7, 3.0.2, 3.0.4 Other Sapelo2 Up20.png
BLASR 2.2 Bioinformatics Sapelo2 Up20.png
BLAST+ 2.6.0, 2.7.1 Bioinformatics Sapelo2 Up20.png
BLAST+ 2.6.0 Bioinformatics Teaching Up20.png
BLAST 2.2.26 Bioinformatics Sapelo2 Up20.png
BLAST 2.2.26 Bioinformatics Teaching Up20.png
BLAT 3.4, 3.5 Bioinformatics Sapelo2 Up20.png
Blosc 1.12.1 Library Sapelo2 Up20.png
Boost 1.54.0, 1.61.0, 1.63.0, 1.65.1 Library Sapelo2 Up20.png
Boto3 1.9.14 Other Sapelo2 Up20.png
bowtie2 2.2.3, 2.3.3, 2.3.4.1 Bioinformatics Sapelo2 Up20.png
Bowtie2 2.2.3, 2.3.3, 2.3.4.1 Bioinformatics Teaching Up20.png
Bowtie 1.2.2 Bioinformatics Sapelo2 Up20.png
braker 2.0.5 Bioinformatics Sapelo2 Up20.png
BreakDancer 1.4.5-foss-2016b Bioinformatics Sapelo2 Up20.png
BS-Seeker2 2.1.5 Bioinformatics Sapelo2 Up20.png
BUSCO 2.0, 3.0.2 Bioinformatics Sapelo2 Up20.png
BUSCO 3.0.2 Bioinformatics Teaching Up20.png
BWA 0.7.15, 0.7.17 Bioinformatics Sapelo2 Up20.png
BWA 0.7.17, 0.7.15 Bioinformatics Teaching Up20.png
Caffe 04082018 Other Sapelo2 Up20.png
cairo 1.14.6, 1.14.10, 1.14.12 Bioinformatics Sapelo2 Up20.png
Canu 1.7, 1.7.1 Bioinformatics Sapelo2 Up20.png
Canu 1.4, 1.5, 1.6, 1.7 Bioinformatics Teaching Up20.png
CAP-miRSeq 05/20184 Bioinformatics Sapelo2 Up20.png
CAP3 03092015 Bioinformatics Sapelo2 Up20.png
CD-HIT 4.6.8 Bioinformatics Sapelo2 Up20.png
CDNA_Cupcake 5.9 Bioinformatics Sapelo2 Up20.png
CENSOR 4.2.29 Bioinformatics Sapelo2 Up20.png
CFITSIO 3.38 Library Sapelo2 Up20.png
CFOUR 1.2, 2.00-beta Chemistry Sapelo2 Up20.png
CGAL 4.11 Library Sapelo2 Up20.png
Cgmaptools 0.1.1 Bioinformatics Sapelo2 Up20.png
Chimera 1.13 Bioinformatics Sapelo2 Up20.png
Chromosomer 0.1.3, 0.1.4a0 Bioinformatics Sapelo2 Up20.png
Chromosomer 0.1.4a Bioinformatics Teaching Up20.png
circlator 1.5.3 Bioinformatics Sapelo2 Up20.png
Circos 0.69-6 Bioinformatics Sapelo2 Up20.png
Cleaveland4 4.4 Bioinformatics Sapelo2 Up20.png
Clustal-Omega 1.2.4 Bioinformatics Sapelo2 Up20.png
ClustalW2 2.1 Bioinformatics Sapelo2 Up20.png
CMake 3.0.0, 3.4.3, 3.5.2, 3.6.1, 3.6.2, 3.7.2, 3.8.0, 3.9.1, 3.9.5, 3.10.2 Other Sapelo2 Up20.png
CNVnator 0.3.3 Bioinformatics Sapelo2 Up20.png
Cogent 3.5 Bioinformatics Sapelo2 Up20.png
Consed 29.0 Bioinformatics Sapelo2 Up20.png
CPLEX 12.6.3 Engineering Sapelo2 Up20.png
crest 1.0 Bioinformatics Sapelo2 Up20.png
CRISPResso 1.0.13 Bioinformatics Sapelo2 Up20.png
CUDA 7.0.28, 7.5.18, 8.0.61, 8.0.61_375.26-GCC-5.4.0-2.26, 9.0.176, 9.1.85 Programming Sapelo2 Up20.png
cuDNN 7.0.4, 7.2.1.38 Programming Sapelo2 Up20.png
Cufflinks 2.2.1 Bioinformatics Sapelo2 Up20.png
Cufflinks 2.2.1 Bioinformatics Teaching Up20.png
cURL 7.49.1 Other Sapelo2 Up20.png
cutadapt 1.9.1, 1.14, 1.16 Bioinformatics Sapelo2 Up20.png
Cython 0.27.3, 0.28.5 Programming Sapelo2 Up20.png
CythonGSL 0.2.2 Other Sapelo2 Up20.png
Danpos2 2.2.2 Bioinformatics Sapelo2 Up20.png
Darknet 3 Other Sapelo2 Up20.png
DBG2OLC 20170208 Bioinformatics Sapelo2 Up20.png
DBG2OLC 20170208 Bioinformatics Teaching Up20.png
DDSCAT 7.3.2 Chemistry Sapelo2 Up20.png
deepTools 3.0.2 Bioinformatics Sapelo2 Up20.png
DeepVariant 0.7.0 Bioinformatics Sapelo2 Up20.png
DendroPy 4.3.0 Bioinformatics Sapelo2 Up20.png
detectMITE 20170425 Bioinformatics Sapelo2 Up20.png
detonate 1.11 Bioinformatics Sapelo2 Up20.png
DIAMOND 1.0 Bioinformatics Sapelo2 Up20.png
DIAMOND 1.0 Bioinformatics Teaching Up20.png
DISCOVARdenovo 52488 Bioinformatics Sapelo2 Up20.png
DLCpar 1.0 Bioinformatics Sapelo2 Up20.png
Doxygen 1.8.7, 1.8.11, 1.8.13 Other Sapelo2 Up20.png
DyNet 2.1 Other Sapelo2 Up20.png
EggNOG-Mapper 1.0.3 Bioinformatics Sapelo2 Up20.png
Eigen 3.2.3, 3.3.5 Library Sapelo2 Up20.png
EIGENSOFT 6.1.4 Bioinformatics Sapelo2 Up20.png
EMBOSS 6.6.0 Bioinformatics Sapelo2 Up20.png
EMBOSS 6.6.0 Bioinformatics Teaching Up20.png
EMMAX beta beta Bioinformatics Sapelo2 Up20.png
Ensembl-VEP 20180914 Bioinformatics Sapelo2 Up20.png
EricScript 0.5.5 Bioinformatics Sapelo2 Up20.png
ESMF 7.0.2 Other Sapelo2 Up20.png
eSpeak 1.48.04 Other Sapelo2 Up20.png
EVcouplings 0.0.5 Bioinformatics Sapelo2 Up20.png
Exonerate 2.4.0 Bioinformatics Sapelo2 Up20.png
Exonerate 2.4.0 Bioinformatics Teaching Up20.png
FALCON 02282018_unzip Bioinformatics Sapelo2 Up20.png
Fast-Plast 1.2.6 Bioinformatics Sapelo2 Up20.png
FASTA 36.3.5e Bioinformatics Sapelo2 Up20.png
FastME 2.1.5 Bioinformatics Sapelo2 Up20.png
FastQC 0.11.5,0.11.8 Bioinformatics Sapelo2 Up20.png
FastQValidator 0.1.1a Bioinformatics Sapelo2 Up20.png
FastSTRUCTURE 1.0 Bioinformatics Sapelo2 Up20.png
FastTree 2.1.10 Bioinformatics Sapelo2 Up20.png
FastViromeExplorer 20180918 Bioinformatics Sapelo2 Up20.png
FASTX-Toolkit 0.0.14 Bioinformatics Sapelo2 Up20.png
FFmpeg 3.1.3, 3.4.1 Other Sapelo2 Up20.png
FFTW 3.3.4, 3.3.6, 3.3.7 Math Library Sapelo2 Up20.png
FIAT 1.6.0 Other Sapelo2 Up20.png
fineSTRUCTURE 2.1.3 Bioinformatics Sapelo2 Up20.png
FLASH 1.2.11 Bioinformatics Sapelo2 Up20.png
FLTK 1.3.4 Other Sapelo2 Up20.png
Flye 2.3.6 Bioinformatics Sapelo2 Up20.png
FoX 4.1.2 Library Sapelo2 Up20.png
Freebayes 1.2.0 Bioinformatics Sapelo2 Up20.png
Freebayes 1.2.0 Bioinformatics Teaching Up20.png
FriBidi 1.0.1 Library Sapelo2 Up20.png
FuzzyWuzzy 0.17.0 Other Sapelo2 Up20.png
fxtract 2.3 Bioinformatics Sapelo2 Up20.png
GAG 2.0.1 Bioinformatics Sapelo2 Up20.png
GAG 2.0.1 Bioinformatics Teaching Up20.png
GAMESS 14Feb2018 Chemistry Sapelo2 Up20.png
GapFiller 2.1.1 Bioinformatics Sapelo2 Up20.png
GapFiller 2.1.1 Bioinformatics Teaching Up20.png
GAPIT 20180524 Bioinformatics Sapelo2 Up20.png
GATK 3.4-0, 3.8-0, 3.8-1, 4.0.3.0, 4.0.11.0 Bioinformatics Sapelo2 Up20.png
GATK 3.8-0, 3.4-0 Bioinformatics Teaching Up20.png
GAUSSIAN 09 Chemistry Sapelo2 Up20.png
GaussView 5 Chemistry Sapelo2 Up20.png
GBlocks 0.91b Bioinformatics Sapelo2 Up20.png
GCTA 1.26.0 Bioinformatics Sapelo2 Up20.png
GD 2.66 Bioinformatics Sapelo2 Up20.png
GDAL 2.1.0, 2.2.2 Library Sapelo2 Up20.png
gdc-client 1.3.0 Bioinformatics Sapelo2 Up20.png
Gdk-pixbuf 2.36.0 Library Sapelo2 Up20.png
GEM-library 20130406-045632 Bioinformatics Sapelo2 Up20.png
GeneMark.hmm.eukaryotic 4.30 Bioinformatics Sapelo2 Up20.png
GeneMarkES 4.33 Bioinformatics Sapelo2 Up20.png
GeneMarkES 4.33 Bioinformatics Teaching Up20.png
GeneMarkS-T 4.33 Bioinformatics Sapelo2 Up20.png
GeneMarkS 4.30 Bioinformatics Sapelo2 Up20.png
GenericRepeatFinder 1.0 Bioinformatics Sapelo2 Up20.png
Genome Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 Bioinformatics Sapelo2 Up20.png
GenomeTools 1.5.9 Bioinformatics Sapelo2 Up20.png
GEOS 3.6.2 Library Sapelo2 Up20.png
GET_HOMOLOGUES 1.7.6 Bioinformatics Teaching Up20.png
Gffcompare 0.10.4 Bioinformatics Sapelo2 Up20.png
gffread 0.9.12 Bioinformatics Sapelo2 Up20.png
GFlow 0.1.7 Library Sapelo2 Up20.png
Ghostscript 9.20, 9.22 Other Sapelo2 Up20.png
GL2PS 1.4.0 Library Sapelo2 Up20.png
GLib 2.49.5, 2.53.5, 2.54.3 Library Sapelo2 Up20.png
GLIMMER 3.02b Bioinformatics Sapelo2 Up20.png
GLIMMER 3.02b Bioinformatics Teaching Up20.png
GLPK 4.63, 4.65 Programming Sapelo2 Up20.png
GMAP-GSNAP 2016-11-07, 2018-07-04 Bioinformatics Sapelo2 Up20.png
GMP 4.3.2, 6.1.1, 6.1.2 Library Sapelo2 Up20.png
gnuplot 5.0.5 Bioinformatics Sapelo2 Up20.png
GObject-Introspection 1.49.1, 1.54.1 Other Sapelo2 Up20.png
grace 5.1.25 Graphics Sapelo2 Up20.png
GraftM 0.11.1 Bioinformatics Sapelo2 Up20.png
GraphicsMagicK 1.3.28 Other Sapelo2 Up20.png
Graphviz 2.40.1 Other Sapelo2 Up20.png
Gromacs 2016.4, 2018.1 Chemistry Sapelo2 Up20.png
GSL 1.16, 2.1, 2.3. 2.4 Math Library Sapelo2 Up20.png
GStreamer 1.14.0 Bioinformatics Sapelo2 Up20.png
GTK+ 2.24.31 Library Sapelo2 Up20.png
GTS 0.7.6 Library Sapelo2 Up20.png
Guile 1.8.8 Other Sapelo2 Up20.png
h5py 2.7.1 Other Sapelo2 Up20.png
HarfBuzz 1.3.1, 1.7.5 Other Sapelo2 Up20.png
HARP 140925_103521 Bioinformatics Sapelo2 Up20.png
Harvest 1.1.2 Bioinformatics Teaching Up20.png
HarvestTools 1.2 Bioinformatics Sapelo2 Up20.png
HH-suite 3.0-beta.3 Bioinformatics Sapelo2 Up20.png
HiC-Pro 2.11.0-beta Bioinformatics Sapelo2 Up20.png
hindex 1.42 Bioinformatics Sapelo2 Up20.png
HISAT2 2.1.0 Bioinformatics Sapelo2 Up20.png
HISAT2 2.1.0 Bioinformatics Teaching Up20.png
HMMER 3.1b2 Bioinformatics Sapelo2 Up20.png
Homer 4.9.1, 4.10 Bioinformatics Sapelo2 Up20.png
HPCGridRunner 1.0.2 Tools Sapelo2 Up20.png
htop 2.0.1 Other Sapelo2 Up20.png
HTSeq 0.9.1 Bioinformatics Sapelo2 Up20.png
HTSeq 0.9.1 Bioinformatics Teaching Up20.png
HTSlib 1.3.2, 1.6, 1.8 Library Sapelo2 Up20.png
HybPiper 1.3.1 Bioinformatics Sapelo2 Up20.png
Hypre 2.11.1 Library Sapelo2 Up20.png
ICORN2 0.95 Bioinformatics Sapelo2 Up20.png
IDBA-UD 1.1.3 Bioinformatics Sapelo2 Up20.png
IGV 2.4.4 Bioinformatics Sapelo2 Up20.png
IGVTools 2.3.98 Bioinformatics Sapelo2 Up20.png
ImageMagick 7.0.5, 7.0.7 Other Sapelo2 Up20.png
Infernal 1.1.2 Bioinformatics Sapelo2 Up20.png
iprscan (InterProScan) 5.29-68.0, 5.31-70.0 Bioinformatics Sapelo2 Up20.png
ipyrad 0.7.24 Bioinformatics Sapelo2 Up20.png
Ipyrad 0.7.24 Bioinformatics Teaching Up20.png
IPython 5.3.0, 6.2.1 Other Sapelo2 Up20.png
IQ-Tree 1.5.5, 1.6.5 Bioinformatics Sapelo2 Up20.png
IRMA 0.6.7 Bioinformatics Sapelo2 Up20.png
ITSTool 2.0.4 Utility Sapelo2 Up20.png
JAGS 4.3.0 Statistics Sapelo2 Up20.png
JasPer 1.900.1, 2.0.12 Other Sapelo2 Up20.png
Java 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144 Programming Sapelo2 Up20.png
Java 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144 Programming Teaching Up20.png
Jellyfish 2.2.6 Bioinformatics Sapelo2 Up20.png
JModelTest 2.1.10 Bioinformatics Sapelo2 Up20.png
Juicer 1.5.6 Bioinformatics Sapelo2 Up20.png
JUnit 4.12 Other Sapelo2 Up20.png
Kaiju 1.6.2 Bioinformatics Sapelo2 Up20.png
kallisto 0.43.1 Bioinformatics Sapelo2 Up20.png
KAT 2.4.1 Bioinformatics Sapelo2 Up20.png
keras 2.0.6, 2.2.2 Other Sapelo2 Up20.png
KmerGenie 1.7044 Bioinformatics Sapelo2 Up20.png
KmerGenie 1.7044 Bioinformatics Teaching Up20.png
KronaTools 2.7 Bioinformatics Sapelo2 Up20.png
LAME 3.100 Other Sapelo2 Up20.png
LAPACK 3.6.1 Other Sapelo2 Up20.png
LAST 956, 959 Bioinformatics Sapelo2 Up20.png
LASTZ 1.04.00 Bioinformatics Sapelo2 Up20.png
LDhat 2.2 Bioinformatics Sapelo2 Up20.png
LDhelmet 1.10 Bioinformatics Sapelo2 Up20.png
LibStatGen 1.0.14 Bioinformatics Sapelo2 Up20.png
LibTIFF 4.0.6, 4.0.8, 4.0.9 Library Sapelo2 Up20.png
LittleCMS 2.8 Other Sapelo2 Up20.png
LLVM 3.8.1, 4.0.0, 5.0.1, 6.0.0 Library Sapelo2 Up20.png
LMDB 0.9.22 Bioinformatics Sapelo2 Up20.png
LoFreq 2.1.2 Bioinformatics Sapelo2 Up20.png
Log-Log4perl 1.49 Other Sapelo2 Up20.png
LongRanger 2.2.2 Bioinformatics Sapelo2 Up20.png
lrslib 6.2 Other Sapelo2 Up20.png
LS-DYNA 10.123355 Engineering Sapelo2 Up20.png
LS-PrePost 4.5 Engineering Sapelo2 Up20.png
LTR_retriever 1.6 Bioinformatics Sapelo2 Up20.png
LUMPY 0.2.13 Bioinformatics Sapelo2 Up20.png
LZO 2.10 Bioinformatics Sapelo2 Up20.png
M4 1.4.16, 1.4.17, 1.4.17 Other Sapelo2 Up20.png
MACS2 2.1.1 Bioinformatics Sapelo2 Up20.png
MAFFT 7.273, 7.313, 7.397, 7.407 Bioinformatics Sapelo2 Up20.png
MAFFT 7.130, 7.273, 7.313 Bioinformatics Teaching Up20.png
Magma-GPU 2.3.0 Other Sapelo2 Up20.png
Magma 2.22-9 Other Sapelo2 Up20.png
mahotas 1.4.3 Bioinformatics Sapelo2 Up20.png
Maker 3.01.02-beta,2.31.9 Bioinformatics Sapelo2 Up20.png
Maker 2.31.9 Bioinformatics Teaching Up20.png
Mako 1.0.4, 1.0.7 Other Sapelo2 Up20.png
MARVEL 20180918 Bioinformatics Sapelo2 Up20.png
Mash 2.1 Bioinformatics Sapelo2 Up20.png
MaSuRCA 3.2.2 Bioinformatics Sapelo2 Up20.png
Matlab R2017b, R2018b Programming Sapelo2 Up20.png
Mauve 2015-02-13 Bioinformatics Sapelo2 Up20.png
Maven 3.5.2 Bioinformatics Sapelo2 Up20.png
MCL 14.137 Bioinformatics Sapelo2 Up20.png
MCScanX 0.8 Bioinformatics Sapelo2 Up20.png
MEGA 7.0.26-1 Bioinformatics Sapelo2 Up20.png
MEGAHIT 1.1.1, 1.1.3 Bioinformatics Sapelo2 Up20.png
MEME 4.11.0, 5.0.0_1 Bioinformatics Sapelo2 Up20.png
Meraculous 2.2.5 Bioinformatics Sapelo2 Up20.png
Mercurial 4.4.2 Other Sapelo2 Up20.png
Mesa 12.0.2, 17.3.6 Other Sapelo2 Up20.png
MET 7.0 Other Sapelo2 Up20.png
methylpy 1.2.9, 1.3.2 Bioinformatics Sapelo2 Up20.png
METIS 5.1.0 Other Sapelo2 Up20.png
minced 0.2.1 Bioinformatics Sapelo2 Up20.png
Minia 3.2.0 Bioinformatics Sapelo2 Up20.png
Miniconda3 4.4.10 Other Sapelo2 Up20.png
Minimap2 2.10, 2.13 Bioinformatics Sapelo2 Up20.png
mirdeep-p 1.3 Bioinformatics Sapelo2 Up20.png
miRDeep2 0.0.8 Bioinformatics Sapelo2 Up20.png
MITE-Hunter 11-2011 Bioinformatics Sapelo2 Up20.png
Mothur 1.39.5 Bioinformatics Sapelo2 Up20.png
motif 2.3.5, 2.3.8 Graphics Sapelo2 Up20.png
MPJ-Express 0.44 Library Sapelo2 Up20.png
MrBayes 3.2.6 Bioinformatics Sapelo2 Up20.png
MREPS 1.0.5 Bioinformatics Sapelo2 Up20.png
MSTmap 20181130 Bioinformatics Sapelo2 Up20.png
MultiQC 1.5 Bioinformatics Sapelo2 Up20.png
MUMmer 3.23, 4.0.0beta2 Bioinformatics Sapelo2 Up20.png
MUMmer 3.23 Bioinformatics Teaching Up20.png
MUSCLE 3.8.1551, 3.8.31 Bioinformatics Sapelo2 Up20.png
MuTect 1.1.7 Bioinformatics Sapelo2 Up20.png
muver 0.1.0 Bioinformatics Sapelo2 Up20.png
mvqtlcim 1.0 Bioinformatics Sapelo2 Up20.png
NAMD 2.12 Chemistry Sapelo2 Up20.png
Nanocorr 5.9 Bioinformatics Sapelo2 Up20.png
NASM 2.11, 2.12, 2.13 Other Sapelo2 Up20.png
NCL 2.1.18, 6.4.0 Bioinformatics Sapelo2 Up20.png
NeEstimator 2.1 Bioinformatics Sapelo2 Up20.png
Newbler 3.0 Bioinformatics Sapelo2 Up20.png
NextGenMap 0.5.5 Bioinformatics Sapelo2 Up20.png
ngmlr 0.2.6-beta Bioinformatics Sapelo2 Up20.png
NGS 1.3.0 Bioinformatics Sapelo2 Up20.png
nhPhyML 20180515 Bioinformatics Sapelo2 Up20.png
NiBabel 2.2.1 Other Sapelo2 Up20.png
nistats 0.0.1a0 Other Sapelo2 Up20.png
NLopt 2.4.2 Library Sapelo2 Up20.png
Nseg 20180530 Bioinformatics Sapelo2 Up20.png
NucleoATAC 0.3.4 Bioinformatics Sapelo2 Up20.png
Oases 0.2.08, 0.2.09 Bioinformatics Sapelo2 Up20.png
OCaml 4.01.0, 4.02.3 Programming Sapelo2 Up20.png
OpenBUGS 3.2.3 Statistics Sapelo2 Up20.png
OpenCV 3.4.1 Other Sapelo2 Up20.png
OpenJPEG 2.3.0 Other Sapelo2 Up20.png
OpenSlide 3.4.1 Other Sapelo2 Up20.png
ORCA 3.0.3, 4.0.0.2, 4.0.1.2 Chemistry Sapelo2 Up20.png
OrfM 0.6.1 Bioinformatics Sapelo2 Up20.png
ORGanelle_ASeMbler 0.2.03 Bioinformatics Sapelo2 Up20.png
ORGASM 0.2.03 Bioinformatics Sapelo2 Up20.png
ORP 2.0.0 Bioinformatics Sapelo2 Up20.png
OrthoFinder 2.1.2 Bioinformatics Sapelo2 Up20.png
OrthoFinder 2.1.2 Bioinformatics Teaching Up20.png
p7zip 16.02 Other Sapelo2 Up20.png
PAGIT 1.64 Bioinformatics Sapelo2 Up20.png
Pal_finder 0.02.04 Bioinformatics Sapelo2 Up20.png
PAML 4.9h Bioinformatics Sapelo2 Up20.png
PAML 4.9h Bioinformatics Teaching Up20.png
PANDAseq 2.5 Bioinformatics Sapelo2 Up20.png
Pango 1.40.3, 1.41.1 Library Sapelo2 Up20.png
Parliament2 0.1.8, hgsc Bioinformatics Sapelo2 Up20.png
Parsnp 1.2 Bioinformatics Sapelo2 Up20.png
PartitionFinder 2.1.1 Bioinformatics Sapelo2 Up20.png
PASA 2.3.3 Bioinformatics Sapelo2 Up20.png
PASTA 1.8.2 Bioinformatics Sapelo2 Up20.png
PAUP 4a162_centos64_intel Bioinformatics Sapelo2 Up20.png
Pb-assembly 0.0.2 Bioinformatics Sapelo2 Up20.png
pbh5tools 0.8.0 Bioinformatics Sapelo2 Up20.png
PBLAT 2.0.0 Bioinformatics Sapelo2 Up20.png
PBSuite 15.8.24 Bioinformatics Sapelo2 Up20.png
PCRE 8.38, 8.39, 8.41 Library Sapelo2 Up20.png
PEAR 0.9.8 Bioinformatics Sapelo2 Up20.png
Perl 5.20.3, 5.24.0, 5.24.1, 5.26.0, 5.26.1 Programming Sapelo2 Up20.png
Perl 5.26.1, 5.26.0, 5.24.1, 5.24.0, 5.20.3 Programming Teaching Up20.png
PETSc 3.8.4 Math Library Sapelo2 Up20.png
PGDSpider 2.1.1.5 Bioinformatics Sapelo2 Up20.png
phaser 1.2.0 Bioinformatics Sapelo2 Up20.png
PhaseTank 1.0 Bioinformatics Sapelo2 Up20.png
PHASIS 3.3 Bioinformatics Sapelo2 Up20.png
Phobius 1.01 Bioinformatics Sapelo2 Up20.png
Phred/Phrap/Conced Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 Bioinformatics Sapelo2 Up20.png
Phycas 2.2.0 Bioinformatics Sapelo2 Up20.png
PHYLIP 3.697 Bioinformatics Sapelo2 Up20.png
PhyloBayes-MPI 20161021 Bioinformatics Sapelo2 Up20.png
PhyloCSF 20180919 Bioinformatics Sapelo2 Up20.png
Phyluce 1.6.1 Bioinformatics Sapelo2 Up20.png
PhyML 3.3.20170530 Bioinformatics Sapelo2 Up20.png
picard 2.16.0 Bioinformatics Sapelo2 Up20.png
Picard 2.16.0 Bioinformatics Teaching Up20.png
PICRUSt 1.1.3 Bioinformatics Sapelo2 Up20.png
pigz 2.3.3 Other Sapelo2 Up20.png
PIL 1.1.7 Library Sapelo2 Up20.png
PILER 2.5 Bioinformatics Sapelo2 Up20.png
Pilon 1.22 Bioinformatics Sapelo2 Up20.png
Pilon 1.22 Bioinformatics Teaching Up20.png
PLINK 1.07, 1.9b Bioinformatics Sapelo2 Up20.png
Plmc 0.1 Bioinformatics Sapelo2 Up20.png
PoSSuMsearch 2.0 Bioinformatics Sapelo2 Up20.png
PRANK 170427 Bioinformatics Sapelo2 Up20.png
Primer3 2.3.7 Bioinformatics Sapelo2 Up20.png
PRINSEQ 0.20.4 Bioinformatics Sapelo2 Up20.png
Prodigal 2.6.3 Bioinformatics Sapelo2 Up20.png
PROJ 4.9.2 Other Sapelo2 Up20.png
Prokka 1.13 Bioinformatics Sapelo2 Up20.png
Prokka 1.13 Bioinformatics Teaching Up20.png
proovread 2.14.1 Bioinformatics Sapelo2 Up20.png
Proovread 2.14.1 Bioinformatics Teaching Up20.png
protobuf 3.3.0, 3.4.0 Other Sapelo2 Up20.png
psmc 0.6.5 Bioinformatics Sapelo2 Up20.png
pybedtools 0.7.10 Bioinformatics Sapelo2 Up20.png
pyDNA 0.1 Bioinformatics Sapelo2 Up20.png
pydub 0.22.1 Other Sapelo2 Up20.png
PyMOL 2.3.0a0 Graphics Sapelo2 Up20.png
PyPy 6.0.0 (2.7.14) Programming Sapelo2 Up20.png
Pysam 0.10.0, 0.13 Bioinformatics Sapelo2 Up20.png
Python 2.7.12, 2.7.14, 3.4.3, 3.5.1 Programming Sapelo2 Up20.png
Python 3.6.4, 3.5.2, 2.7.14, 2.7.12 Programming Teaching Up20.png
PyTorch 0.3.1 Other Sapelo2 Up20.png
QIIME2 2018.2, 2018.4, 2018.6, 2018.8, 2018.11 Bioinformatics Sapelo2 Up20.png
QIIME2 2018.4, 2018.6, 2018.8 Bioinformatics Teaching Up20.png
QIIME 1.9.1 Bioinformatics Sapelo2 Up20.png
QTLcartographer 1.17j Bioinformatics Sapelo2 Up20.png
Qualimap2 2.2.1 Bioinformatics Sapelo2 Up20.png
Quantum Espresso 6.2.0 Chemistry Sapelo2 Up20.png
QUAST 4.2, 4.6.1, 4.6.3, 5.0.0 Bioinformatics Sapelo2 Up20.png
R 3.4.4 Statistics Sapelo2 Up20.png
R 3.4.4 Statistics Teaching Up20.png
racon 20180406 Bioinformatics Sapelo2 Up20.png
randfold 2.0.1 Bioinformatics Sapelo2 Up20.png
RATT 20180710 Bioinformatics Sapelo2 Up20.png
RAxML-NG 0.7.0 Bioinformatics Sapelo2 Up20.png
RAxML 8.2.4, 8.2.11 Bioinformatics Sapelo2 Up20.png
RAxML 8.2.11 Bioinformatics Teaching Up20.png
Ray 2.3.1 Bioinformatics Sapelo2 Up20.png
Rcorrector 1.0.2 Bioinformatics Sapelo2 Up20.png
REAPR 1.0.18 Bioinformatics Sapelo2 Up20.png
RECON 1.08 Bioinformatics Sapelo2 Up20.png
RepeatExplorer-TAREAN 11/09/2018 Bioinformatics Sapelo2 Up20.png
RepeatMasker 4.0.5, 4.0.7 Bioinformatics Sapelo2 Up20.png
RepeatMasker 4.0.7 Bioinformatics Teaching Up20.png
Repeatmodeler 1.0.11 Bioinformatics Sapelo2 Up20.png
RepeatModeler 1.0.11 Bioinformatics Teaching Up20.png
RepeatScout 1.05 Bioinformatics Sapelo2 Up20.png
RepeatScout 1.05 Bioinformatics Teaching Up20.png
REPET 2.5 Bioinformatics Sapelo2 Up20.png
rjags 4.6 Other Sapelo2 Up20.png
RMBlast 2.6.0 Bioinformatics Sapelo2 Up20.png
Rmpi 0.6-6 Programming Sapelo2 Up20.png
RNAmmer 1.2 Bioinformatics Sapelo2 Up20.png
Roary 3.12.0 Bioinformatics Sapelo2 Up20.png
Rosetta 2017.45.59812 Chemistry Sapelo2 Up20.png
RSEM 1.3.0, 1.3.1 Bioinformatics Sapelo2 Up20.png
Ruby 2.5.0 Programming Sapelo2 Up20.png
runBNG 1.03 Bioinformatics Sapelo2 Up20.png
Sage 8.0 Other Sapelo2 Up20.png
Salmon 0.8.2 Bioinformatics Sapelo2 Up20.png
SALSA 2.0 Bioinformatics Sapelo2 Up20.png
SAMtools 0.1.19, 1.1, 1.3.1, 1.6 Bioinformatics Sapelo2 Up20.png
SAMtools 1.6, 1.3.1, 0.1.19 Bioinformatics Teaching Up20.png
sbt 1.1.1 Programming Sapelo2 Up20.png
scala 2.12.4 Programming Sapelo2 Up20.png
scikit-image 0.13.1, 0.14.0 Other Sapelo2 Up20.png
SCons 2.5.0 Other Sapelo2 Up20.png
SCOTCH 6.0.4 Other Sapelo2 Up20.png
seaview 4.7 Bioinformatics Sapelo2 Up20.png
Seq-Gen 1.3.4 Bioinformatics Sapelo2 Up20.png
seqtk 1.2 Bioinformatics Sapelo2 Up20.png
shapeit v2.r904 Bioinformatics Sapelo2 Up20.png
ShortStack 3.8.5 Bioinformatics Sapelo2 Up20.png
SICER 1.1 Bioinformatics Sapelo2 Up20.png
SICERpy 0.1 Bioinformatics Sapelo2 Up20.png
SignalP 4.1f Bioinformatics Sapelo2 Up20.png
Silix 1.2.9 Bioinformatics Sapelo2 Up20.png
SINE_Scan 1.1.1 Bioinformatics Sapelo2 Up20.png
slda 0.1.6 Other Sapelo2 Up20.png
smoke 4.5 Other Sapelo2 Up20.png
SMRTLINK 5.1.0.26412, 6.0.0.47841 Bioinformatics Sapelo2 Up20.png
SMRTLINK 5.0.1.9585, 5.1.0.26412 Bioinformatics Teaching Up20.png
SNAP-Zoe 20060728 Bioinformatics Sapelo2 Up20.png
SNAP-Zoe 20060728 Bioinformatics Teaching Up20.png
Sniffles 1.0.8 Bioinformatics Sapelo2 Up20.png
SNP-ML 1.3.0 Bioinformatics Sapelo2 Up20.png
snpEff 4.3t Bioinformatics Sapelo2 Up20.png
SnpEff 4.3t Bioinformatics Teaching Up20.png
SNPhylo 20160204 Bioinformatics Sapelo2 Up20.png
SOAPaligner 2.21 Bioinformatics Sapelo2 Up20.png
SOAPdenovo2 r240 Bioinformatics Sapelo2 Up20.png
SOAPdenovo2 r240 Bioinformatics Teaching Up20.png
SOP-GPU 20180404 Bioinformatics Sapelo2 Up20.png
SortMeRNA 2.1 Bioinformatics Sapelo2 Up20.png
SPAdes 3.11.1, 3.12.0 Bioinformatics Sapelo2 Up20.png
SPAdes 3.11.1 Bioinformatics Teaching Up20.png
spams 2.6.1 Other Sapelo2 Up20.png
Spark 2.2.1 Other Sapelo2 Up20.png
SPM 12 Other Sapelo2 Up20.png
SRAToolKit 2.8.2-1, 2.9.1 Bioinformatics Sapelo2 Up20.png
SSAHA2 2.5.5 Bioinformatics Sapelo2 Up20.png
SSPACE-longread 1-1 Bioinformatics Teaching Up20.png
SSPACE-STANDARD 3.0 Bioinformatics Teaching Up20.png
SSPACE 2.1.1 Bioinformatics Sapelo2 Up20.png
Stacks 1.48, 2.2 Bioinformatics Sapelo2 Up20.png
Stacks 2.0, 1.48 Bioinformatics Teaching Up20.png
STAR-Fusion 1.5.0 Bioinformatics Sapelo2 Up20.png
STAR 2.5.3a, 2.6.0c, 2.6.1c Bioinformatics Sapelo2 Up20.png
STAR 2.5.3a, 2.6.0c Bioinformatics Teaching Up20.png
StrAuto 1.0 Bioinformatics Sapelo2 Up20.png
StringTie 1.3.3, 1.3.4d Bioinformatics Sapelo2 Up20.png
StringTie 1.3.3, 1.3.4d Bioinformatics Teaching Up20.png
Structure 2.3.4 Bioinformatics Sapelo2 Up20.png
Subread 1.6.2 Bioinformatics Sapelo2 Up20.png
SUNTANS 20180305 Other Sapelo2 Up20.png
Supernova 2.0.1, 2.1.1 Bioinformatics Sapelo2 Up20.png
SVDetect 0.7 Bioinformatics Sapelo2 Up20.png
SWIG 3.0.12 Bioinformatics Sapelo2 Up20.png
Synima 20181205 Bioinformatics Sapelo2 Up20.png
TASSEL 5.2.44 Bioinformatics Sapelo2 Up20.png
Tbl2asn 04172018 Bioinformatics Sapelo2 Up20.png
TCSF_IMRA 1.3 Bioinformatics Sapelo2 Up20.png
TensorFlow-models 20180620 Other Sapelo2 Up20.png
TensorFlow 1.8.0, 1.10.1 Other Sapelo2 Up20.png
Theano 0.9.0 Other Sapelo2 Up20.png
TMHMM 2.0c Bioinformatics Sapelo2 Up20.png
Tophat 2.1.1 Bioinformatics Sapelo2 Up20.png
TopHat 2.1.1 Bioinformatics Teaching Up20.png
TPP 5.1.0 Bioinformatics Sapelo2 Up20.png
TransDecoder 2.1.0 Bioinformatics Sapelo2 Up20.png
TrimAl 1.4.1 Bioinformatics Sapelo2 Up20.png
Trimmomatic 0.36 Bioinformatics Sapelo2 Up20.png
Trimmomatic 0.36 Bioinformatics Teaching Up20.png
Trim_Galore 0.4.5 Bioinformatics Sapelo2 Up20.png
Trinity r20140717, 2.5.1, 2.6.6 Bioinformatics Sapelo2 Up20.png
Trinity 2.6.6 Bioinformatics Teaching Up20.png
Trinotate 3.1.1 Bioinformatics Sapelo2 Up20.png
TRNAscan-SE 2.0.0 Bioinformatics Sapelo2 Up20.png
UCLUST 1.2.22q Bioinformatics Sapelo2 Up20.png
ucsc 359 Bioinformatics Sapelo2 Up20.png
UPP 3.2 Other Sapelo2 Up20.png
USEARCH 10.0.240 Bioinformatics Sapelo2 Up20.png
VarScan 2.4.2 Bioinformatics Sapelo2 Up20.png
VCF-kit 0.1.6 Bioinformatics Sapelo2 Up20.png
vcf2diploid 0.2.6a Chemistry Sapelo2 Up20.png
vcf2phylip 1.5 Bioinformatics Sapelo2 Up20.png
vcflib 20180410 Bioinformatics Sapelo2 Up20.png
VCFtools 0.1.15 Bioinformatics Sapelo2 Up20.png
VCFtools 0.1.15 Bioinformatics Teaching Up20.png
Velvet 1.2.10 Bioinformatics Sapelo2 Up20.png
Velvet 1.2.10 Bioinformatics Teaching Up20.png
ViennaRNA 2.4.3, 2.4.6 Bioinformatics Sapelo2 Up20.png
Vmatch 2.3.0 Bioinformatics Sapelo2 Up20.png
VSEARCH 2.8.1 Bioinformatics Sapelo2 Up20.png
WGS 8.3rc2 Bioinformatics Sapelo2 Up20.png
WPS 3.8 Other Sapelo2 Up20.png
WRF-Chem 3.6.1, 3.8.0 Other Sapelo2 Up20.png
WRF-Fire 20170221 Other Sapelo2 Up20.png
WRF 3.6.1, 3.8.0 Other Sapelo2 Up20.png
WU Blast 2.2.6 Bioinformatics Sapelo2 Up20.png
xforms 1.2.4 Graphics Sapelo2 Up20.png
YASRA 2.33 Bioinformatics Sapelo2 Up20.png

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