Training - Revision history

Jordan: /* Sapelo2 Best Practices */

2026-09-14T14:47:54Z

Sapelo2 Best Practices

← Older revision		Revision as of 10:47, 14 September 2026
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	===Sapelo2 Best Practices ===		===Sapelo2 Best Practices for Computational Biology ===
	~~Blurb~~		This workshop is primarily intended for researchers who have gained ''some'' hands-on experience conducting their own research on Sapelo2 but need an introduction to best practices for correct and efficient use of the cluster. Topics include best practices for loading and using software modules, correct allocation and use of computational resources (memory, CPUs, GPUs, etc.) and file systems, and important considerations for specific software packages; the examples covered will focus on bioinformatics, but the principles covered are broadly applicable to users across research areas.

	'''Prerequisite:'''		'''Prerequisite:'''
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	'''Training Goals:'''		'''Training Goals:'''

	1.		1. Learn how to correctly experiment with software packages

	2.		2. Understand the available file systems and computation resources and how to use them correctly

	3.		3. Understand the caveats and considerations of using some of the more popular bioinformatics software packages

	'''Scheduled Sessions:'''		'''Scheduled Sessions:'''

Chelsea at 13:17, 14 September 2026

2026-09-14T13:17:31Z

← Older revision		Revision as of 09:17, 14 September 2026
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	\|October 20th, Tuesday, 1:00 PM - 3:00 PM		\|October 20th, Tuesday, 1:00 PM - 3:00 PM
	\|}		\|}


	===Sapelo2 Best Practices ===		===Sapelo2 Best Practices ===

Chelsea: /* Regular Training Announcement */

2026-09-14T13:16:54Z

Regular Training Announcement

← Older revision		Revision as of 09:16, 14 September 2026
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	5. Job Parallelization with GNU Parallel and Slurm Arrays (1 session)		5. Job Parallelization with GNU Parallel and Slurm Arrays (1 session)


			In '''October 2026''', the GACRC is hosting 10 training sessions listed below. These training workshops will be offered remotely via Zoom Meeting. Detailed instructions for joining the Zoom meeting will be sent to your UGA email account before each training session you register for.

			We will offer:

			1. Linux training for Linux-inexperienced cluster new users (3 sessions)

			2. Sapelo2 cluster new user training (3 sessions)

			3. Using Sapelo2 Cluster at the GACRC, Part II (1 session)

			4. Installing Software Packages in Virtual Environments on Sapelo2 (1 session)

			5. Job Parallelization with GNU Parallel and Slurm Arrays (1 session)

			6. Sapelo2 Best Practices (1 session)

	==Event Schedule==		==Event Schedule==

Chelsea: /* Sapelo2 Cluster New User Training */

2026-09-14T13:15:34Z

Sapelo2 Cluster New User Training

← Older revision		Revision as of 09:15, 14 September 2026
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	\|-		\|-
	\|Using Sapelo2 Cluster at the GACRC		\|Using Sapelo2 Cluster at the GACRC
	\|~~August 20th~~, Thursday, 2:00 PM - 4:00 PM		\|September 16th, Wednesday, 2:00 PM - 4:00 PM
			\|-
			\|Using Sapelo2 Cluster at the GACRC
			\|September 24th, Thursday, 2:00 PM - 4:00 PM
	\|-		\|-
	\|Using Sapelo2 Cluster at the GACRC		\|Using Sapelo2 Cluster at the GACRC
	\|~~September 11th~~, ~~Friday~~, 2:00 PM - 4:00 PM		\|October 7th, Wednesday, 2:00 PM - 4:00 PM
	\|-		\|-
	\|Using Sapelo2 Cluster at the GACRC		\|Using Sapelo2 Cluster at the GACRC
	\|~~September 16th~~, ~~Wednesday~~, 2:00 PM - 4:00 PM		\|October 15th, Thursday, 2:00 PM - 4:00 PM
	\|-		\|-
	\|Using Sapelo2 Cluster at the GACRC		\|Using Sapelo2 Cluster at the GACRC
	\|~~September 24th~~, ~~Thursday~~, 2:00 PM - 4:00 PM		\|October 23rd, Friday, 2:00 PM - 4:00 PM
	\|}		\|}

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	\|-		\|-
	\|Use Linux on Cluster		\|Use Linux on Cluster
	\|~~August 18th~~, Tuesday, 1:00 PM - 3:00 PM		\|September 22nd, Tuesday, 1:00 PM - 3:00 PM
	\|-		\|-
	\|Use Linux on Cluster		\|Use Linux on Cluster
	\|~~September 9th~~, ~~Wednesday~~, 1:00 PM - 3:00 PM		\|October 5th, Monday, 1:00 PM - 3:00 PM
	\|-		\|-
	\|Use Linux on Cluster		\|Use Linux on Cluster
	\|~~September 14th~~, ~~Monday~~, 1:00 PM - 3:00 PM		\|October 13th, Tuesday, 1:00 PM - 3:00 PM
	\|-		\|-
	\|Use Linux on Cluster		\|Use Linux on Cluster
	\|~~September 22nd~~, ~~Tuesday~~, 1:00 PM - 3:00 PM		\|October 21st, Wednesday, 1:00 PM - 3:00 PM
	\|}		\|}

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	\|Using Sapelo2 Cluster at the GACRC, Part II		\|Using Sapelo2 Cluster at the GACRC, Part II
	\|September 18th, Friday, 1:00 PM - 3:00 PM		\|September 18th, Friday, 1:00 PM - 3:00 PM
			\|-
			\|Using Sapelo2 Cluster at the GACRC, Part II
			\|October 16th, Friday, 1:00 PM - 3:00 PM
	\|}		\|}

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	\|Installing Software Packages in Virtual Environments on Sapelo2		\|Installing Software Packages in Virtual Environments on Sapelo2
	\|September 23rd, Wednesday, 2:00 PM - 2:45 PM		\|September 23rd, Wednesday, 2:00 PM - 2:45 PM
			\|-
			\|Installing Software Packages in Virtual Environments on Sapelo2
			\|October 27th, Tuesday, 2:00 PM - 2:45 PM
	\|}		\|}

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	\|Job Parallelization with GNU Parallel and Slurm Arrays		\|Job Parallelization with GNU Parallel and Slurm Arrays
	\|September 25th, Friday, 1:00 PM - 3:00 PM		\|September 25th, Friday, 1:00 PM - 3:00 PM
			\|-
			\|Job Parallelization with GNU Parallel and Slurm Arrays
			\|October 20th, Tuesday, 1:00 PM - 3:00 PM
	\|}		\|}

			===Sapelo2 Best Practices ===
			Blurb

			'''Prerequisite:'''

			Must already have strong understanding of the Linux environment and Sapelo2.

			'''Training Goals:'''

			1.

			2.

			3.

			'''Scheduled Sessions:'''

			{\| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
			\|-
			! scope="col" \|Title
			! scope="col" \|Date/Time
			\|-
			\|Sapelo2 Best Practices
			\|October 29th, Thursday, 2:00 PM - 3:00 PM
			\|}

	<!--		<!--

Chelsea: /* Sapelo2 Cluster Training */

2026-09-14T13:07:46Z

Sapelo2 Cluster Training

← Older revision		Revision as of 09:07, 14 September 2026
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	{\| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"		{\| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
	\|[[:~~File:GACRC Sapelo2 New User Training~~.pdf]]		\|[[Media:GACRC_Sapelo2_New_User_Training.pdf]]
	\|-		\|-
	\|[[Media:GACRC_Sapelo2_cluster_new_user_training_workshop_v10.8.pdf]]		\|[[Media:GACRC_Sapelo2_cluster_new_user_training_workshop_v10.8.pdf]]

Chelsea: /* Sapelo2 Cluster Training */

2026-09-14T13:05:01Z

Sapelo2 Cluster Training

← Older revision		Revision as of 09:05, 14 September 2026
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	{\| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"		{\| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
	\|[[GACRC Sapelo2 New User Training.pdf]]		\|[[:File:GACRC Sapelo2 New User Training.pdf]]
	\|-		\|-
	\|[[Media:GACRC_Sapelo2_cluster_new_user_training_workshop_v10.8.pdf]]		\|[[Media:GACRC_Sapelo2_cluster_new_user_training_workshop_v10.8.pdf]]

Chelsea: /* Sapelo2 Cluster Training */

2026-09-14T13:04:29Z

Sapelo2 Cluster Training

← Older revision		Revision as of 09:04, 14 September 2026
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	{\| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"		{\| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
	\|~~Media:~~GACRC Sapelo2 New User Training.pdf		\|[[GACRC Sapelo2 New User Training.pdf]]
	\|-		\|-
	\|[[Media:GACRC_Sapelo2_cluster_new_user_training_workshop_v10.8.pdf]]		\|[[Media:GACRC_Sapelo2_cluster_new_user_training_workshop_v10.8.pdf]]

Chelsea: /* Sapelo2 Cluster Training */

2026-09-14T13:03:56Z

Sapelo2 Cluster Training

← Older revision		Revision as of 09:03, 14 September 2026
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	{\| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"		{\| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
	\|		\|Media:GACRC Sapelo2 New User Training.pdf
	\|-		\|-
	\|[[Media:GACRC_Sapelo2_cluster_new_user_training_workshop_v10.8.pdf]]		\|[[Media:GACRC_Sapelo2_cluster_new_user_training_workshop_v10.8.pdf]]

Chelsea: /* Download */

2026-09-14T13:02:30Z

Download

← Older revision		Revision as of 09:02, 14 September 2026
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			\|
			\|-
	\|[[Media:GACRC_Sapelo2_cluster_new_user_training_workshop_v10.8.pdf]]		\|[[Media:GACRC_Sapelo2_cluster_new_user_training_workshop_v10.8.pdf]]
	\|-		\|-

Shtsai: /* Out-Reach/In-Class Talk */

2026-08-24T20:16:25Z

Out-Reach/In-Class Talk

← Older revision		Revision as of 16:16, 24 August 2026
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	\|-		\|-
	\|BCMB8330 - Spring2026 \|\| In-Class \|\| [[Media:GACRC-Teaching-cluster-new-user-training-workshop_bcmb8330_Spring2026.pdf]]		\|BCMB8330 - Spring2026 \|\| In-Class \|\| [[Media:GACRC-Teaching-cluster-new-user-training-workshop_bcmb8330_Spring2026.pdf]]
			\|-
			\|CSP seminar - Fall 2026\|\| Out-Reach \|\| [[Media:GACRC_overview_20260825_CSP.pdf]]
	<!--		<!--
	\|-		\|-