Software Template - Revision history

Shtsai at 17:26, 6 May 2026

2026-05-06T17:26:18Z

← Older revision		Revision as of 13:26, 6 May 2026
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	<pre>		<pre>
	[[Category:~~Zcluster~~]][[Category:Software]][[Category:Bioinformatics]]		[[Category:Sapelo2]][[Category:Software]][[Category:Bioinformatics]]
	=== Category ===		== Category ==
	Bioinformatics		Bioinformatics
	=== Program On ===		== Program On ==
	~~zcluster~~		Sapelo2
	=== Version ===		== Version ==

	=== Author / Distributor ===		== Author / Distributor ==

	=== Description ===		== Description ==

	=== Running Program ===		== Running Program ==

	Also refer to [[Running Jobs on zcluster]]		Also refer to [[Running Jobs on zcluster]]

	=== Documentation ===		== Documentation ==
	=== Installation ===		== Installation ==
	=== System ===		== System ==
	64-bit Linux		64-bit Linux
	</pre>		</pre>

Yhuang at 20:06, 1 February 2013

2013-02-01T20:06:14Z

← Older revision		Revision as of 16:06, 1 February 2013
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	=== Category ===		=== Category ===
	Bioinformatics		Bioinformatics
	=== Program on ===		=== Program On ===
	zcluster		zcluster
	=== Version ===		=== Version ===

Shtsai at 16:16, 1 February 2013

2013-02-01T16:16:33Z

← Older revision		Revision as of 12:16, 1 February 2013
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	<pre>		<pre>
	[[Category:Zcluster]][[Category:Software]][[Category:]]		[[Category:Zcluster]][[Category:Software]][[Category:Bioinformatics]]
	=== Category ===		=== Category ===
			Bioinformatics
	=== Program on ===		=== Program on ===
			zcluster
	=== Version ===		=== Version ===

Shtsai at 20:12, 31 January 2013

2013-01-31T20:12:26Z

← Older revision		Revision as of 16:12, 31 January 2013
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	Also refer to [[Running Jobs on zcluster]]		Also refer to [[Running Jobs on zcluster]]

	~~Latest version ... is pointed to ...~~

	~~Example of a shell script blast.sh to run on at the batch queue:~~

	=== Documentation ===		=== Documentation ===

Shtsai at 20:11, 31 January 2013

2013-01-31T20:11:48Z

← Older revision		Revision as of 16:11, 31 January 2013
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	=== Installation ===		=== Installation ===
	=== System ===		=== System ===
			64-bit Linux
	</pre>		</pre>

Shtsai at 20:11, 31 January 2013

2013-01-31T20:11:08Z

← Older revision		Revision as of 16:11, 31 January 2013
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	<pre>		<pre>
	[[Category:Zcluster]][[Category:Software]][[Category:]]		[[Category:Zcluster]][[Category:Software]][[Category:]]
	=== Category: ===		=== Category ===

	=== Program on ===		=== Program on ===
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	=== Documentation ===		=== Documentation ===
	=== Installation ===		=== Installation ===
	=== System~~(s)~~ ===		=== System ===
	</pre>		</pre>

Yhuang at 19:24, 31 January 2013

2013-01-31T19:24:30Z

← Older revision		Revision as of 15:24, 31 January 2013
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	Example of a shell script blast.sh to run on at the batch queue:		Example of a shell script blast.sh to run on at the batch queue:

	~~<pre class="gscript">~~
	~~#!/bin/bash~~
	~~cd working_directory~~
	~~time~~
	~~</pre>~~
	~~<pre class="gcommand">~~
	~~qsub -q queuename ./sub.sh~~
	~~</pre>~~

	=== Documentation ===		=== Documentation ===

Yhuang at 19:23, 31 January 2013

2013-01-31T19:23:38Z

← Older revision		Revision as of 15:23, 31 January 2013
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			<pre>
	[[Category:Zcluster]][[Category:Software]][[Category:]]		[[Category:Zcluster]][[Category:Software]][[Category:]]
	=== Category: ===		=== Category: ===
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	=== Installation ===		=== Installation ===
	=== System(s) ===		=== System(s) ===
			</pre>

Yhuang at 19:03, 31 January 2013

2013-01-31T19:03:45Z

← Older revision		Revision as of 15:03, 31 January 2013
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	[[Category:Zcluster]][[Category:Software]][[Category:~~Bioinformatics~~]]		[[Category:Zcluster]][[Category:Software]][[Category:]]
	=== Category: ~~Bioinformatics~~ ===		=== Category: ===

	=== Program on ===		=== Program on ===

	~~zcluster~~

	=== Version ===		=== Version ===

	~~2.2.26~~

	=== Author / Distributor ===		=== Author / Distributor ===

	~~[http://www.ncbi.nlm.nih.gov NCBI]~~

	=== Description ===		=== Description ===

	~~BLAST (Basic Local Alignment Search Tool), more details at [http://www.ncbi.nlm.nih.gov NCBI]~~

	=== Running Program ===		=== Running Program ===
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	Also refer to [[Running Jobs on zcluster]]		Also refer to [[Running Jobs on zcluster]]

	Latest version ~~/usr/local/ncbiblast/latest/~~ is pointed to ~~/usr/local/ncbiblast/2~~.26		Latest version ... is pointed to ...

	Example of a shell script blast.sh to run on at the batch queue:		Example of a shell script blast.sh to run on at the batch queue:
Line 29:		Line 21:
	#!/bin/bash		#!/bin/bash
	cd working_directory		cd working_directory
	time ~~/usr/local/ncbiblast/latest/bin/blastall -p blastn -d /db/ncbiblast/latest/nt -i QUERY -o out.QUERY~~		time
	</pre>		</pre>
	<pre class="gcommand">		<pre class="gcommand">
	qsub -q queuename ./~~blast~~.sh		qsub -q queuename ./sub.sh
	~~</pre>~~
	~~<pre class="gcomment">~~
	~~sample of comments~~
	</pre>		</pre>

	=== Documentation ===		=== Documentation ===

	~~[[NCBI]] website.~~

	=== Installation ===		=== Installation ===

	~~Executable binary code downloaded from [[NCBI Blast]]~~

	=== System(s) ===		=== System(s) ===

	~~Unix~~

Yhuang at 19:02, 31 January 2013

2013-01-31T19:02:13Z

← Older revision		Revision as of 15:02, 31 January 2013
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	[[Category:Zcluster]][[Category:Software]][[Category:Bioinformatics]]		[[Category:Zcluster]][[Category:Software]][[Category:Bioinformatics]]
	~~== NCBI Blast ==~~

	=== Category: Bioinformatics ===		=== Category: Bioinformatics ===