Magma-Sapelo2 - Revision history

Shtsai at 01:02, 5 April 2026

2026-04-05T01:02:32Z

← Older revision		Revision as of 21:02, 4 April 2026
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	[[Category:Sapelo2]][[Category:Software]][[Category:Other]]		[[Category:Sapelo2]][[Category:Software]][[Category:Other]]
	=== Category ===		== Category ==
	Other		Other
	=== Program On ===		== Program On ==
	Sapelo2		Sapelo2
	=== Version ===		== Version ==
	2.27-1-AVX2, 2.28-27-AVX2		2.27-1-AVX2, 2.28-27-AVX2
	===Author / Distributor===		==Author / Distributor==
	Please see http://magma.maths.usyd.edu.au/magma/: "Magma is distributed by the Computational Algebra Group at the University of Sydney."		Please see http://magma.maths.usyd.edu.au/magma/: "Magma is distributed by the Computational Algebra Group at the University of Sydney."
	===Description===		==Description==
	From http://magma.maths.usyd.edu.au/magma/: "Magma is a large, well-supported software package designed for computations in algebra, number theory, algebraic geometry and algebraic combinatorics. It provides a mathematically rigorous environment for defining and working with structures such as groups, rings, fields, modules, algebras, schemes, curves, graphs, designs, codes and many others. Magma also supports a number of databases designed to aid computational research in those areas of mathematics which are algebraic in nature. "		From http://magma.maths.usyd.edu.au/magma/: "Magma is a large, well-supported software package designed for computations in algebra, number theory, algebraic geometry and algebraic combinatorics. It provides a mathematically rigorous environment for defining and working with structures such as groups, rings, fields, modules, algebras, schemes, curves, graphs, designs, codes and many others. Magma also supports a number of databases designed to aid computational research in those areas of mathematics which are algebraic in nature. "
	=== Running Program ===		== Running Program ==

	Also refer to [[Running Jobs on Sapelo2]]		Also refer to [[Running Jobs on Sapelo2]]
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	</pre>		</pre>

	=== Documentation ===		== Documentation ==
	Tutorials and user guide are available at http://magma.maths.usyd.edu.au/magma/documentation/		Tutorials and user guide are available at http://magma.maths.usyd.edu.au/magma/documentation/

	=== Installation ===		== Installation ==
	*Binaries for Intel and AMD processors with AVX2 support downloaded from http://magma.maths.usyd.edu.au/magma/		*Binaries for Intel and AMD processors with AVX2 support downloaded from http://magma.maths.usyd.edu.au/magma/

	=== System ===		== System ==
	64-bit Linux		64-bit Linux

Shtsai at 16:46, 16 September 2025

2025-09-16T16:46:48Z

← Older revision		Revision as of 12:46, 16 September 2025
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	Sapelo2		Sapelo2
	=== Version ===		=== Version ===
	2.27-1-AVX2		2.27-1-AVX2, 2.28-27-AVX2
	===Author / Distributor===		===Author / Distributor===
	Please see http://magma.maths.usyd.edu.au/magma/: "Magma is distributed by the Computational Algebra Group at the University of Sydney."		Please see http://magma.maths.usyd.edu.au/magma/: "Magma is distributed by the Computational Algebra Group at the University of Sydney."
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	module load Magma-AU/2.27-1-AVX2		module load Magma-AU/2.27-1-AVX2
	</pre>Use the --constraint Slurm header with the value magma to ensure that your job lands on a node that is licensed for magma.		</pre>Use the --constraint Slurm header with the value magma to ensure that your job lands on a node that is licensed for magma.

			*Version 2.28-27-AVX2 (CPU version), installed in /apps/gb/Magma-AU/2.28-27-AVX2

			To use this version of magma, please first load the module with
			<pre class="gscript">
			module load Magma-AU/2.28-27-AVX2
			</pre>Use the --constraint Slurm header with the value magma to ensure that your job lands on a node that is licensed for magma.


	<!--		<!--
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	cd $SLURM_SUBMIT_DIR		cd $SLURM_SUBMIT_DIR

	module load Magma-AU/2.27-1-AVX2		module load Magma-AU/2.28-27-AVX2

	magma test.txt > output_${SLURM_JOB_ID}.log		magma test.txt > output_${SLURM_JOB_ID}.log

Shtsai: /* Installation */

2024-03-21T20:28:06Z

Installation

← Older revision		Revision as of 16:28, 21 March 2024
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	=== Installation ===		=== Installation ===
	*Binaries for Intel and AMD processors with ~~AVX~~ support downloaded from http://magma.maths.usyd.edu.au/magma/		*Binaries for Intel and AMD processors with AVX2 support downloaded from http://magma.maths.usyd.edu.au/magma/

	=== System ===		=== System ===
	64-bit Linux		64-bit Linux

Shtsai at 20:27, 21 March 2024

2024-03-21T20:27:44Z

← Older revision		Revision as of 16:27, 21 March 2024
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	</pre>Use the --constraint Slurm header with the value magma to ensure that your job lands on a node that is licensed for magma.		</pre>Use the --constraint Slurm header with the value magma to ensure that your job lands on a node that is licensed for magma.

	<--!		<!--
	*Version 2.27-1-AVX2-CUDA-10 (GPU version), installed in /apps/gb/Magma-AU/2.27-1-AVX2-CUDA-10		*Version 2.27-1-AVX2-CUDA-10 (GPU version), installed in /apps/gb/Magma-AU/2.27-1-AVX2-CUDA-10

Shtsai at 20:27, 21 March 2024

2024-03-21T20:27:28Z

← Older revision		Revision as of 16:27, 21 March 2024
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	Sapelo2		Sapelo2
	=== Version ===		=== Version ===
	~~2.25, 2.27-1-AVX,~~ 2.27-1-AVX2~~, 2.27-1-AVX2-CUDA-10~~		2.27-1-AVX2
	===Author / Distributor===		===Author / Distributor===
	Please see http://magma.maths.usyd.edu.au/magma/: "Magma is distributed by the Computational Algebra Group at the University of Sydney."		Please see http://magma.maths.usyd.edu.au/magma/: "Magma is distributed by the Computational Algebra Group at the University of Sydney."
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	For more information on Environment Modules on Sapelo2 please see the [[Lmod]] page.		For more information on Environment Modules on Sapelo2 please see the [[Lmod]] page.


	*Version 2.25 (CPU version), installed in /apps/gb/Magma-AU/2.25

	~~To use this version of magma, please first load the module with~~
	~~<pre class="gscript">~~
	~~module load Magma-AU/2.25~~
	~~</pre>~~
	*Version 2.27-1-AVX (CPU version), installed in /apps/gb/Magma-AU/2.27-1-AVX

	~~To use this version of magma, please first load the module with~~
	~~<pre class="gscript">~~
	~~module load Magma-AU/2.27-1-AVX~~
	~~</pre>~~
	*Version 2.27-1-AVX2 (CPU version), installed in /apps/gb/Magma-AU/2.27-1-AVX2		*Version 2.27-1-AVX2 (CPU version), installed in /apps/gb/Magma-AU/2.27-1-AVX2

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	<pre class="gscript">		<pre class="gscript">
	module load Magma-AU/2.27-1-AVX2		module load Magma-AU/2.27-1-AVX2
	</pre>Use the --constraint Slurm header with the value ~~EDR~~ to ensure that your job lands on a node that ~~supports AVX2~~.		</pre>Use the --constraint Slurm header with the value magma to ensure that your job lands on a node that is licensed for magma.

			<--!
	*Version 2.27-1-AVX2-CUDA-10 (GPU version), installed in /apps/gb/Magma-AU/2.27-1-AVX2-CUDA-10		*Version 2.27-1-AVX2-CUDA-10 (GPU version), installed in /apps/gb/Magma-AU/2.27-1-AVX2-CUDA-10

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	Use the --constraint Slurm header with the value EDR to ensure that your job lands on a node that supports AVX2.		Use the --constraint Slurm header with the value EDR to ensure that your job lands on a node that supports AVX2.
			-->

	When running Magma, please request the node feature '''magma''', as only nodes with this feature are included in our Magma license file. To do that, please add the Slurm option '''--constraint=magma''', as in the sample job submission script below.		When running Magma, please request the node feature '''magma''', as only nodes with this feature are included in our Magma license file. To do that, please add the Slurm option '''--constraint=magma''', as in the sample job submission script below.
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	#SBATCH --output=%x.%j.out		#SBATCH --output=%x.%j.out
	#SBATCH --error=%x.%j.err		#SBATCH --error=%x.%j.err
	#SBATCH --constraint=magma~~,EDR~~ #request the node features magma ~~& EDR~~		#SBATCH --constraint=magma #request the node features magma

Ben at 15:47, 12 October 2022

2022-10-12T15:47:17Z

← Older revision		Revision as of 11:47, 12 October 2022
Line 5:		Line 5:
	Sapelo2		Sapelo2
	=== Version ===		=== Version ===
	2.25		2.25, 2.27-1-AVX, 2.27-1-AVX2, 2.27-1-AVX2-CUDA-10
	===Author / Distributor===		===Author / Distributor===
	Please see http://magma.maths.usyd.edu.au/magma/: "Magma is distributed by the Computational Algebra Group at the University of Sydney."		Please see http://magma.maths.usyd.edu.au/magma/: "Magma is distributed by the Computational Algebra Group at the University of Sydney."
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	<pre class="gscript">		<pre class="gscript">
	module load Magma-AU/2.25		module load Magma-AU/2.25
			</pre>
			*Version 2.27-1-AVX (CPU version), installed in /apps/gb/Magma-AU/2.27-1-AVX

			To use this version of magma, please first load the module with
			<pre class="gscript">
			module load Magma-AU/2.27-1-AVX
			</pre>
			*Version 2.27-1-AVX2 (CPU version), installed in /apps/gb/Magma-AU/2.27-1-AVX2

			To use this version of magma, please first load the module with
			<pre class="gscript">
			module load Magma-AU/2.27-1-AVX2
			</pre>Use the --constraint Slurm header with the value EDR to ensure that your job lands on a node that supports AVX2.

			*Version 2.27-1-AVX2-CUDA-10 (GPU version), installed in /apps/gb/Magma-AU/2.27-1-AVX2-CUDA-10

			To use this version of magma, please first load the module with
			<pre class="gscript">
			module load Magma-AU/2.27-1-AVX2-CUDA-10
	</pre>		</pre>

			Use the --constraint Slurm header with the value EDR to ensure that your job lands on a node that supports AVX2.

	When running Magma, please request the node feature '''magma''', as only nodes with this feature are included in our Magma license file. To do that, please add the Slurm option '''--constraint=magma''', as in the sample job submission script below.		When running Magma, please request the node feature '''magma''', as only nodes with this feature are included in our Magma license file. To do that, please add the Slurm option '''--constraint=magma''', as in the sample job submission script below.
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	#SBATCH --output=%x.%j.out		#SBATCH --output=%x.%j.out
	#SBATCH --error=%x.%j.err		#SBATCH --error=%x.%j.err
	#SBATCH --constraint=magma #request the node ~~feature '''~~magma~~'''~~		#SBATCH --constraint=magma,EDR #request the node features magma & EDR


	cd $SLURM_SUBMIT_DIR		cd $SLURM_SUBMIT_DIR

	module load Magma-AU/2.25		module load Magma-AU/2.27-1-AVX2

	magma test.txt > output_${SLURM_JOB_ID}.log		magma test.txt > output_${SLURM_JOB_ID}.log

Shtsai: /* Running Program */

2020-10-29T02:18:18Z

Running Program

← Older revision		Revision as of 22:18, 28 October 2020
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	~~'''~~When running Magma, please request the node feature magma, as only nodes with this feature are included in our Magma license file.~~'''~~To do that, please add the Slurm option --constraint=magma, as in the sample job submission below.		When running Magma, please request the node feature '''magma''', as only nodes with this feature are included in our Magma license file. To do that, please add the Slurm option '''--constraint=magma''', as in the sample job submission script below.

Shtsai: Created page with "Category:Sapelo2Category:SoftwareCategory:Other === Category === Other === Program On === Sapelo2 === Version === 2.25 ===Author / Distributor=== Please see http..."

2020-10-29T02:17:17Z

Created page with "Category:Sapelo2 Category:Software Category:Other === Category === Other === Program On === Sapelo2 === Version === 2.25 ===Author / Distributor=== Please see http..."

New page

[[Category:Sapelo2]][[Category:Software]][[Category:Other]]
=== Category ===
Other
=== Program On ===
Sapelo2
=== Version ===
2.25
===Author / Distributor===
Please see http://magma.maths.usyd.edu.au/magma/: "Magma is distributed by the Computational Algebra Group at the University of Sydney."
===Description===
From http://magma.maths.usyd.edu.au/magma/: "Magma is a large, well-supported software package designed for computations in algebra, number theory, algebraic geometry and algebraic combinatorics. It provides a mathematically rigorous environment for defining and working with structures such as groups, rings, fields, modules, algebras, schemes, curves, graphs, designs, codes and many others. Magma also supports a number of databases designed to aid computational research in those areas of mathematics which are algebraic in nature. "
=== Running Program ===

Also refer to [[Running Jobs on Sapelo2]]

For more information on Environment Modules on Sapelo2 please see the [[Lmod]] page.

*Version 2.25 (CPU version), installed in /apps/gb/Magma-AU/2.25

To use this version of magma, please first load the module with
<pre class="gscript">
module load Magma-AU/2.25
</pre>

'''When running Magma, please request the node feature magma, as only nodes with this feature are included in our Magma license file.'''To do that, please add the Slurm option --constraint=magma, as in the sample job submission below.

'''Example of how to run magma in a batch job'''

1. Create a magma script. In the example below this script is called test.txt and its content is
<pre class="gscript">
print 3+5;
</pre>

2. Create a job submission script, called sub.sh in the example here, with the sample content

<pre class="gscript">
#!/bin/bash
#SBATCH --job-name=testmagma
#SBATCH --partition=batch
#SBATCH --ntasks=1
#SBATCH --nodes=1
#SBATCH --mem=5gb
#SBATCH --time=12:00:00
#SBATCH --output=%x.%j.out
#SBATCH --error=%x.%j.err
#SBATCH --constraint=magma #request the node feature '''magma'''

cd $SLURM_SUBMIT_DIR

module load Magma-AU/2.25

magma test.txt > output_${SLURM_JOB_ID}.log
</pre>
where test.txt needs to be replaced by the name of your magma program. Other parameters of the job, such as the maximum wall clock time, maximum memory, and the job name need to be modified appropriately as well. In this example, the standard output of the magma command will be saved into a file called "output_${SLURM_JOB_ID}.log", where ${SLURM_JOB_ID} will automatically be replaced by the jobid number.

3. Submit the job to the queue with
<pre class="gcommand">
sbatch sub.sh
</pre>

=== Documentation ===
Tutorials and user guide are available at http://magma.maths.usyd.edu.au/magma/documentation/

=== Installation ===
*Binaries for Intel and AMD processors with AVX support downloaded from http://magma.maths.usyd.edu.au/magma/

=== System ===
64-bit Linux