Jupyter-Sapelo2 - Revision history

Chelsea at 13:17, 8 July 2026

2026-07-08T13:17:29Z

← Older revision		Revision as of 09:17, 8 July 2026
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	== Version ==		== Version ==

	6.5.6, 7.0.2, 7.2.0, 7.2.3, 7.4.4, 7.4.7		6.5.6, 7.0.2, 7.2.0, 7.2.3, 7.4.4, 7.4.5, 7.4.7

	== Author / Distributor ==		== Author / Distributor ==

Shtsai at 13:09, 8 July 2026

2026-07-08T13:09:24Z

← Older revision		Revision as of 09:09, 8 July 2026
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	== Version ==		== Version ==

	6.5.6, 7.0.2, 7.2.0, 7.2.3, 7.4.4~~, 7.4.5~~, 7.4.7		6.5.6, 7.0.2, 7.2.0, 7.2.3, 7.4.4, 7.4.7

	== Author / Distributor ==		== Author / Distributor ==

Shtsai at 13:08, 8 July 2026

2026-07-08T13:08:58Z

← Older revision		Revision as of 09:08, 8 July 2026
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	== Version ==		== Version ==

	6.5.6, 7.0.2, 7.2.0, 7.2.3, 7.4.4, 7.4.7		6.5.6, 7.0.2, 7.2.0, 7.2.3, 7.4.4, 7.4.5, 7.4.7

	== Author / Distributor ==		== Author / Distributor ==

Shtsai: /* Running Program */

2026-04-05T00:57:47Z

Running Program

@@ Line 41: / Line 41: @@
 '''Please note: You do not have to install jupyter notebook on your local machine.'''
+For example, to use Jupyter 7.2.3, please load the module:
 <pre class="gcommand">
 module load JupyterNotebook/7.2.3-GCCcore-13.3.0

Shtsai at 00:56, 5 April 2026

2026-04-05T00:56:55Z

← Older revision		Revision as of 20:56, 4 April 2026
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	[[Category:Sapelo2]][[Category:Software]][[Category:Programming]]		[[Category:Sapelo2]][[Category:Software]][[Category:Programming]]
	=== Category ===		== Category ==

	Programming		Programming

	=== Program On ===		== Program On ==

	Sapelo2		Sapelo2

	=== Version ===		== Version ==

	6.5.6, 7.0.2, 7.2.0, 7.2.3		6.5.6, 7.0.2, 7.2.0, 7.2.3, 7.4.4, 7.4.7

	=== Author / Distributor ===		== Author / Distributor ==

	[https://jupyter.readthedocs.io/en/latest/index.html Jupyter]		[https://jupyter.readthedocs.io/en/latest/index.html Jupyter]

	=== Description ===		== Description ==

	"The Jupyter Notebook is a web application that allows you to create and share documents that contain live code, equations, visualizations and explanatory text" [https://jupyter.readthedocs.io/en/latest/index.html Jupyter]		"The Jupyter Notebook is a web application that allows you to create and share documents that contain live code, equations, visualizations and explanatory text" [https://jupyter.readthedocs.io/en/latest/index.html Jupyter]

	=== Running Program ===		== Running Program ==

	====Versions====		===Versions===

	Please also refer to [[Running Jobs on Sapelo2]].		Please also refer to [[Running Jobs on Sapelo2]].
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	*Jupyter 7.2.3 is installed as a module called JupyterNotebook/7.2.3-GCCcore-13.3.0 and it uses Python 3.12.3		*Jupyter 7.2.3 is installed as a module called JupyterNotebook/7.2.3-GCCcore-13.3.0 and it uses Python 3.12.3

			*Jupyter 7.4.4 is installed as a module called JupyterNotebook/7.4.4-GCCcore-14.2.0 and it uses Python 3.13.1

			*Jupyter 7.4.7 is installed as a module called JupyterNotebook/7.4.7-GCCcore-14.3.0 and it uses Python 3.13.5


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	There are three options to use Jupyter notebook on Sapelo2.		There are three options to use Jupyter notebook on Sapelo2.

	====Option 1: Use the Jupyter notebook interactive app in the Open OnDemand interface (highly recommended)====		===Option 1: Use the Jupyter notebook interactive app in the Open OnDemand interface (highly recommended)===

	The best way to run a Jupyter notebook on Sapelo2 is using the Jupyter notebook interactive app in the [[OnDemand]] interface to Sapelo2.		The best way to run a Jupyter notebook on Sapelo2 is using the Jupyter notebook interactive app in the [[OnDemand]] interface to Sapelo2.
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	==== Option 2: Use the Jupyter notebook in an X Desktop session in the Open OnDemand interface====		=== Option 2: Use the Jupyter notebook in an X Desktop session in the Open OnDemand interface===

	Another option to run jupyter-notebook from the Open OnDemand interface is to first start an X Desktop session in the [[OnDemand]] interface and run jupyter-notebook from that desktop. This option is helpful if		Another option to run jupyter-notebook from the Open OnDemand interface is to first start an X Desktop session in the [[OnDemand]] interface and run jupyter-notebook from that desktop. This option is helpful if
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	====Option 3: To use Jupyter notebook on sapelo2 with an interactive job (not recommended)====		===Option 3: To use Jupyter notebook on sapelo2 with an interactive job (not recommended)===

	'''The port number for the jupyter notebook server should be some random value between 8000 and 10000. Assign this value to the variable 'NOTEBOOKPORT' in the submission script below replacing 8888. Please do not use 8888. If more than one person uses that same value you cannot establish the ssh tunnel'''		'''The port number for the jupyter notebook server should be some random value between 8000 and 10000. Assign this value to the variable 'NOTEBOOKPORT' in the submission script below replacing 8888. Please do not use 8888. If more than one person uses that same value you cannot establish the ssh tunnel'''
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	Copy and paste the token, which in the example above is 857f8a9f63cf42f698ac1845db64219516a23e248019cdeb, into the proper field in the page displayed in your browser.		Copy and paste the token, which in the example above is 857f8a9f63cf42f698ac1845db64219516a23e248019cdeb, into the proper field in the page displayed in your browser.

	===Documentation===		==Documentation==

	Details at https://jupyter.readthedocs.io/en/latest/index.html		Details at https://jupyter.readthedocs.io/en/latest/index.html

	===System===		==System==
	64-bit Linux		64-bit Linux

Shtsai at 18:18, 1 August 2025

2025-08-01T18:18:38Z

← Older revision		Revision as of 14:18, 1 August 2025
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	*2.8: Start another Terminal in the X Desktop session and in it start firefox with		*2.8: Start another Terminal in the X Desktop session and in it start firefox with
	<pre class="gcommand">		<pre class="gcommand">
	/apps/eb/Firefox/~~120~~.0.1/firefox		/apps/eb/Firefox/141.0/firefox
	</pre>		</pre>

Shtsai at 17:00, 1 August 2025

2025-08-01T17:00:47Z

← Older revision		Revision as of 13:00, 1 August 2025
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	To add a Conda environment to Jupyter Notebook please see [[Using a Conda environment in Jupyter]]		To add a Conda environment to Jupyter Notebook please see [[Using a Conda environment in Jupyter]]

	====Option 3: To use Jupyter notebook on sapelo2 with an interactive job====

			====Option 3: To use Jupyter notebook on sapelo2 with an interactive job (not recommended)====

	'''The port number for the jupyter notebook server should be some random value between 8000 and 10000. Assign this value to the variable 'NOTEBOOKPORT' in the submission script below replacing 8888. Please do not use 8888. If more than one person uses that same value you cannot establish the ssh tunnel'''		'''The port number for the jupyter notebook server should be some random value between 8000 and 10000. Assign this value to the variable 'NOTEBOOKPORT' in the submission script below replacing 8888. Please do not use 8888. If more than one person uses that same value you cannot establish the ssh tunnel'''

Shtsai at 16:59, 1 August 2025

2025-08-01T16:59:50Z

← Older revision		Revision as of 12:59, 1 August 2025
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	=== Version ===		=== Version ===

	~~6.4.12,~~ 6.5.2, 6~~.5.4~~, 6.5.6, 7.0.3, 7.2.0		6.5.6, 7.0.2, 7.2.0, 7.2.3

	=== Author / Distributor ===		=== Author / Distributor ===
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	Please also refer to [[Running Jobs on Sapelo2]].		Please also refer to [[Running Jobs on Sapelo2]].

	*Jupyter 6.4.12 is installed as part of Anaconda3 2022.10 with python 3.9.13. This version is installed at /apps/eb/Anaconda3/2022.10

	*Jupyter 6.5.2 is installed as part of Anaconda3 2023.03-1 with python 3.10.9. This version is installed at /apps/eb/Anaconda3/2023.03-1

	*Jupyter 6.5.4 is installed as part of Anaconda3 2023.09-0 with python 3.11.5. This version is installed at /apps/eb/Anaconda3/2023.09-0

	*Jupyter 6.5.6 is installed as a module called JupyterNotebook/6.5.6-GCCcore-11.3.0 and it uses Python 3.10.4		*Jupyter 6.5.6 is installed as a module called JupyterNotebook/6.5.6-GCCcore-11.3.0 and it uses Python 3.10.4

	*Jupyter 7.0.3 is installed as a module called JupyterNotebook/7.0.3-GCCcore-12.2.0 and it uses Python 3.10.8		*Jupyter 7.0.2 is installed as a module called JupyterNotebook/7.0.2-GCCcore-12.3.0 and it uses Python 3.11.3

	*Jupyter 7.2.0 is installed as a module called JupyterNotebook/7.2.0-GCCcore-13.2.0 and it uses Python 3.11.5		*Jupyter 7.2.0 is installed as a module called JupyterNotebook/7.2.0-GCCcore-13.2.0 and it uses Python 3.11.5

			*Jupyter 7.2.3 is installed as a module called JupyterNotebook/7.2.3-GCCcore-13.3.0 and it uses Python 3.12.3


	'''Please note: You do not have to install jupyter notebook on your local machine.'''		'''Please note: You do not have to install jupyter notebook on your local machine.'''

	~~To use Jupyter 6.4.12, please load the module:~~
	~~<pre class="gcommand">~~
	~~module load Anaconda3/2022.10~~
	~~</pre>~~

	~~To use Jupyter 6.5.2, please load the module:~~
	~~<pre class="gcommand">~~
	~~module load Anaconda3/2023.03-1~~
	~~</pre>~~

	~~To use Jupyter 6.5.4, please load the module:~~
	~~<pre class="gcommand">~~
	~~module load Anaconda3/2023.09-0~~
	~~</pre>~~

	To use Jupyter 6.5.6, please load the module:		To use Jupyter 6.5.6, please load the module:
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	</pre>		</pre>

	To use Jupyter 7.0.3, please load the module:		To use Jupyter 7.0.2, please load the module:
	<pre class="gcommand">		<pre class="gcommand">
	module load JupyterNotebook/7.0.3-GCCcore-12.2.0		module load JupyterNotebook/7.0.2-GCCcore-12.3.0
	</pre>		</pre>

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	</pre>		</pre>

			To use Jupyter 7.2.3, please load the module:
			<pre class="gcommand">
			module load JupyterNotebook/7.2.3-GCCcore-13.3.0
			</pre>

	<!--		<!--
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	<u>Some Important Notes about requesting resources for a Jupyter Notebook session through Open OnDemand:</u>		<u>Some Important Notes about requesting resources for a Jupyter Notebook session through Open OnDemand:</u>

	* With this option, you are able to use jupyter-notebook from ~~centrally installed Anaconda3 modules or~~ centrally installed JupyterNotebook modules, which you can choose under "Jupyter Environment Setup".		* With this option, you are able to use jupyter-notebook from centrally installed JupyterNotebook modules, which you can choose under "Jupyter Environment Setup".
	* You can also choose which directory to start Jupyter from using the "Notebook Directory" option		* You can also choose which directory to start Jupyter from using the "Notebook Directory" option
	** For example, if you put /scratch/MyID in that box, it will start your session from your scratch dir and you will only have access to the files and folders there.		** For example, if you put /scratch/MyID in that box, it will start your session from your scratch dir and you will only have access to the files and folders there.

Chelsea at 20:42, 12 March 2025

2025-03-12T20:42:30Z

← Older revision		Revision as of 16:42, 12 March 2025
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	To add a Conda virtual environment to Jupyter Notebook please see [[Using a Conda environment in Jupyter]]		To add a Conda virtual environment to Jupyter Notebook please see [[Using a Conda environment in Jupyter]]


	To add a Python virtual environment to Jupyter Notebook please see [[Using a Python environment in Jupyter]]		To add a Python virtual environment to Jupyter Notebook please see [[Using a Python environment in Jupyter]]

Chelsea at 20:41, 12 March 2025

2025-03-12T20:41:53Z

← Older revision		Revision as of 16:41, 12 March 2025
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	To add a Conda virtual environment to Jupyter Notebook please see [[Using a Conda environment in Jupyter]]		To add a Conda virtual environment to Jupyter Notebook please see [[Using a Conda environment in Jupyter]]
			To add a Python virtual environment to Jupyter Notebook please see [[Using a Python environment in Jupyter]]


	==== Option 2: Use the Jupyter notebook in an X Desktop session in the Open OnDemand interface====		==== Option 2: Use the Jupyter notebook in an X Desktop session in the Open OnDemand interface====