Shtsai at 19:28, 4 April 2026

2026-04-04T19:28:00Z

← Older revision		Revision as of 15:28, 4 April 2026
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	[[Category:Sapelo2]][[Category:Software]][[Category:Bioinformatics]]		[[Category:Sapelo2]][[Category:Software]][[Category:Bioinformatics]]
	=== Category ===		== Category ==

	Bioinformatics		Bioinformatics

	=== Program On ===		== Program On ==

	Sapelo2		Sapelo2

	=== Version ===		== Version ==



	=== Author / Distributor ===		== Author / Distributor ==



	=== Description ===		== Description ==



	=== Running Program ===		== Running Program ==

	Also refer to [[Running Jobs on Sapelo2]]		Also refer to [[Running Jobs on Sapelo2]]

	For more information on Environment Modules on Sapelo please see the [[Lmod]] page.		For more information on Environment Modules on Sapelo please see the [[Lmod]] page.
	T
	o find all versions of app installed on Sapelo2, please use module spider command to do a search, as shown below:		To find all versions of app installed on Sapelo2, please use module spider command to do a search, as shown below:
	<pre class="gscript">		<pre class="gscript">
	module spider app		module spider app
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	</pre>		</pre>

	=== Documentation ===		== Documentation ==

	<pre class="gcommand">		<pre class="gcommand">
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	</pre>		</pre>

	=== Installation ===		== Installation ==

	[[#top\|Back to Top]]		[[#top\|Back to Top]]

Shtsai: Created page with "Category:Sapelo2Category:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === === Author / Distribut..."

2022-07-27T19:30:46Z

Created page with "Category:Sapelo2 Category:Software Category:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === === Author / Distribut..."

New page

[[Category:Sapelo2]][[Category:Software]][[Category:Bioinformatics]]
=== Category ===

Bioinformatics

=== Program On ===

Sapelo2

=== Version ===

=== Author / Distributor ===

=== Description ===

=== Running Program ===

Also refer to [[Running Jobs on Sapelo2]]

For more information on Environment Modules on Sapelo please see the [[Lmod]] page.
T
o find all versions of app installed on Sapelo2, please use module spider command to do a search, as shown below:
<pre class="gscript">
module spider app
</pre>

Example of a shell script sub.sh to run blastn on the batch partition:
<pre class="gscript">
#!/bin/bash
#SBATCH --job-name=appjob
#SBATCH --partition=batch
#SBATCH --mail-type=ALL
#SBATCH --mail-user=username@uga.edu
#SBATCH --ntasks=1
#SBATCH --mem=10gb
#SBATCH --time=08:00:00
#SBATCH --output=%x.%j.out
#SBATCH --error=%x.%j.err
cd $SLURM_SUBMIT_DIR
ml app/version-toolchain
app [options]
</pre>

where [options] need to be replaced by the options (command and arguments) you want to use. Other parameters of the job, such as the maximum wall clock time, maximum memory, the number of nodes and cores per node, and the job name need to be modified appropriately as well.

Submit the job to the queue with
<pre class="gcommand">
sbatch ./sub.sh
</pre>

=== Documentation ===

<pre class="gcommand">
module load app/version-toolchain
appname -help
</pre>

=== Installation ===

[[#top|Back to Top]]

00Template-sapelo2 - Revision history

Shtsai at 19:28, 4 April 2026

Shtsai: Created page with "Category:Sapelo2Category:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === === Author / Distribut..."