Research Computing Center Wiki - Recent changes [en]

File:GACRC virtual environments training v1.2.pdf

Chelsea — Wed, 24 Jun 2026 12:47:09 GMT

Chelsea uploaded a new version of File:GACRC virtual environments training v1.2.pdf

New page

File:GACRC-Teaching-cluster-new-user-training-workshop-Spring2026.pdf

Chelsea — Wed, 24 Jun 2026 12:46:49 GMT

Chelsea uploaded a new version of File:GACRC-Teaching-cluster-new-user-training-workshop-Spring2026.pdf

New page

Basespace-cli-Sapelo2

Chelsea — Tue, 23 Jun 2026 13:37:16 GMT

Version

← Older revision		Revision as of 09:37, 23 June 2026
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	== Version ==		== Version ==

	1.2.1		1.2.1, 1.7.0

	== Author / Distributor ==		== Author / Distributor ==
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	* Version 1.2.1 is installed in the xfer nodes (not on the Sapelo2 login, qlogin, or compute nodes) in /usr/local/bin, a directory that is on user's default path. To use this program, first ssh into xfer.gacrc.uga.edu and you can access the command there.		* Version 1.2.1 is installed in the xfer nodes (not on the Sapelo2 login, qlogin, or compute nodes) in /usr/local/bin, a directory that is on user's default path. To use this program, first ssh into xfer.gacrc.uga.edu and you can access the command there.
			* Version 1.7.0 is installed as a software module that can be loaded with 'ml BaseSpace-CLI/1.7.0'

	== Documentation ==		== Documentation ==

Software

Chelsea — Tue, 23 Jun 2026 13:36:32 GMT

Partial List of Installed Software

← Older revision		Revision as of 09:36, 23 June 2026
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	<!-- \| [[Barrnap-Sapelo2\|Barrnap]] \|\| 0.9 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[Barrnap-Sapelo2\|Barrnap]] \|\| 0.9 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	\| [[basespace-cli-Sapelo2\|basespace-cli]] \|\| 1.2.1 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		\| [[basespace-cli-Sapelo2\|basespace-cli]] \|\| 1.2.1, 1.7.0 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	<!-- \| [[Basset-Sapelo2\|Basset]] \|\| 20200107 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[Basset-Sapelo2\|Basset]] \|\| 20200107 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]

Cytoscape-Teaching

Chelsea — Tue, 23 Jun 2026 12:11:38 GMT

← Older revision		Revision as of 08:11, 23 June 2026
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	== Version ==		== Version ==

	3.9.1		3.9.1, 3.10.4

	== Author / Distributor ==		== Author / Distributor ==

Cytoscape-Sapelo2

Chelsea — Tue, 23 Jun 2026 12:11:30 GMT

Version

← Older revision		Revision as of 08:11, 23 June 2026
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	== Version ==		== Version ==

	3.9.1		3.9.1, 3.10.4

	== Author / Distributor ==		== Author / Distributor ==

Software

Chelsea — Tue, 23 Jun 2026 12:11:16 GMT

Partial List of Installed Software

← Older revision		Revision as of 08:11, 23 June 2026
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	<!-- \| [[CythonGSL-Sapelo2\|CythonGSL]] \|\| 0.2.2 \|\| [[:Category:Other\|Other]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[CythonGSL-Sapelo2\|CythonGSL]] \|\| 0.2.2 \|\| [[:Category:Other\|Other]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	\| [[Cytoscape-Sapelo2\|Cytoscape]] \|\| 3.9.1 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		\| [[Cytoscape-Sapelo2\|Cytoscape]] \|\| 3.9.1, 3.10.4 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	\| [[Cytoscape-Teaching\|Cytoscape]] \|\| 3.9.1 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Teaching]] \|\| [[File:Up20.png\|20px\|link=#top]]		\| [[Cytoscape-Teaching\|Cytoscape]] \|\| 3.9.1, 3.10.4 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Teaching]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|-		\|-
	<!-- \| <span id ="D"></span> [[Dadi-Sapelo2\|Dadi]] \|\| 1.7.0, 2.0.2 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| <span id ="D"></span> [[Dadi-Sapelo2\|Dadi]] \|\| 1.7.0, 2.0.2 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]

CUDA-Sapelo2

Chelsea — Tue, 23 Jun 2026 12:10:37 GMT

Program On

← Older revision		Revision as of 08:10, 23 June 2026
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	== Version ==		== Version ==

	11.7.0, 11.8.0, 12.1.1, 12.4.0, 12.6.0, 12.8.0		11.7.0, 11.8.0, 12.1.1, 12.4.0, 12.6.0, 12.8.0, 13.1.0

	== Author / Distributor ==		== Author / Distributor ==

Software

Chelsea — Tue, 23 Jun 2026 12:10:27 GMT

Partial List of Installed Software

← Older revision		Revision as of 08:10, 23 June 2026
(One intermediate revision by the same user not shown)
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	<!-- \| [[cairo-Sapelo2\|cairo]] \|\| 1.14.6, 1.14.10, 1.14.12 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[cairo-Sapelo2\|cairo]] \|\| 1.14.6, 1.14.10, 1.14.12 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	\| [[Canu-Sapelo2\|Canu]] \|\| 2.2\|\|[[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		\| [[Canu-Sapelo2\|Canu]] \|\| 2.3\|\|[[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|-		\|-
	<!-- \| [[canu-Teaching\|Canu]] \|\| 1.4, 1.5, 1.6, 1.7 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Teaching\|Teaching]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[canu-Teaching\|Canu]] \|\| 1.4, 1.5, 1.6, 1.7 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Teaching\|Teaching]] \|\| [[File:Up20.png\|20px\|link=#top]]
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	\| [[Cromwell-Sapelo2\|Cromwell]] \|\| 56 \|\| [[:Category:Tools\|Tools]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		\| [[Cromwell-Sapelo2\|Cromwell]] \|\| 56 \|\| [[:Category:Tools\|Tools]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|-		\|-
	\|[[CUDA-Sapelo2\|CUDA]] \|\| 11.7.0, 11.8.0, 12.1.1, 12.4.0, 12.6.0, 12.8.0 \|\|[[:Category:Programming\|Programming]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		\|[[CUDA-Sapelo2\|CUDA]] \|\| 11.7.0, 11.8.0, 12.1.1, 12.4.0, 12.6.0, 12.8.0, 13.1.0 \|\|[[:Category:Programming\|Programming]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|-		\|-
	<!-- \| [[cuDNN-Sapelo2\|cuDNN]] \|\| 7.0.4, 7.2.1.38, 7.4.2.24 \|\| [[:Category:Programming\|Programming]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[cuDNN-Sapelo2\|cuDNN]] \|\| 7.0.4, 7.2.1.38, 7.4.2.24 \|\| [[:Category:Programming\|Programming]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]

Cactus-Sapelo2

Chelsea — Tue, 16 Jun 2026 14:40:50 GMT

Version

← Older revision		Revision as of 10:40, 16 June 2026
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	Sapelo2		Sapelo2
	== Version ==		== Version ==
	1.2.3, 2.0.3, 2.4.3, 2.4.4, 2.5.0, 2.6.0, 2.6.7, 2.6.9, 2.7.0		1.2.3, 2.0.3, 2.4.3, 2.4.4, 2.5.0, 2.6.0, 2.6.7, 2.6.9, 2.7.0, 2.9.0, 2.9.3, 2.9.9, 3.0.0
	==Author / Distributor==		==Author / Distributor==
	Please see https://github.com/ComparativeGenomicsToolkit/cactus		Please see https://github.com/ComparativeGenomicsToolkit/cactus
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	*Version 2.6.7 is installed as module called Cactus/2.6.7-GCCcore-11.3.0-Python-3.10.4		*Version 2.6.7 is installed as module called Cactus/2.6.7-GCCcore-11.3.0-Python-3.10.4
			*Version 2.9.9 is installed as module called Cactus/2.9.9
	*Version 1.2.3 is installed as a singularity image at /apps/singularity-images/cactus_v1.2.3.sif		*Version 1.2.3 is installed as a singularity image at /apps/singularity-images/cactus_v1.2.3.sif
	*Version 2.0.3 is installed as a singularity image at /apps/singularity-images/cactus_v2.0.3.sif		*Version 2.0.3 is installed as a singularity image at /apps/singularity-images/cactus_v2.0.3.sif
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	*Version 2.4.4 is installed as a singularity image at /apps/singularity-images/cactus_v2.4.4.sif		*Version 2.4.4 is installed as a singularity image at /apps/singularity-images/cactus_v2.4.4.sif
	*Version 2.5.0 is installed as a singularity image at /apps/singularity-images/cactus_v2.5.0.sif		*Version 2.5.0 is installed as a singularity image at /apps/singularity-images/cactus_v2.5.0.sif
	*Version 2.6.0 is installed as a singularity image at /apps/singularity-images/cactus_v2.6.0.sif		*Version 2.6.0 with GPU support is installed as a singularity image at /apps/singularity-images/cactus_v2.6.0-gpu.sif

	*Version 2.6.9 is installed as a singularity image at /apps/singularity-images/cactus_v2.6.9.sif		*Version 2.6.9 is installed as a singularity image at /apps/singularity-images/cactus_v2.6.9.sif
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	*Version 2.7.0 with GPU support is installed as a singularity image at /apps/singularity-images/cactus_v2.7.0-gpu.sif		*Version 2.7.0 with GPU support is installed as a singularity image at /apps/singularity-images/cactus_v2.7.0-gpu.sif
			*Version 2.9.0 is installed as a singularity image at /apps/singularity-images/cactus_v2.9.0.sif
			*Version 2.9.3 is installed as a singularity image at /apps/singularity-images/cactus_v2.9.3.sif
			*Version 2.9.9 is installed as a singularity image at /apps/singularity-images/cactus_v2.9.9.sif
			*Version 3.0.0 is installed as a singularity image at /apps/singularity-images/cactus_v3.0.0.sif

Software

Chelsea — Tue, 16 Jun 2026 14:38:24 GMT

← Older revision		Revision as of 10:38, 16 June 2026
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	<!-- \| <span id ="C"></span> [[Caffe-Sapelo2\|Caffe]] \|\| 04082018 \|\| [[:Category:Other\|Other]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| <span id ="C"></span> [[Caffe-Sapelo2\|Caffe]] \|\| 04082018 \|\| [[:Category:Other\|Other]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	\|<span id ="C"></span> [[Cactus-Sapelo2\|Cactus]] \|\| 1.2.3, 2.0.3, 2.4.3, 2.4.4, 2.5.0, 2.6.0, 2.6.7, 2.6.9, 2.7.0 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		\|<span id ="C"></span> [[Cactus-Sapelo2\|Cactus]] \|\| 1.2.3, 2.0.3, 2.4.3, 2.4.4, 2.5.0, 2.6.0, 2.6.7, 2.6.9, 2.7.0, 2.9.0, 2.9.3, 2.9.9, 3.0.0 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|-		\|-
	<!-- \| [[cairo-Sapelo2\|cairo]] \|\| 1.14.6, 1.14.10, 1.14.12 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[cairo-Sapelo2\|cairo]] \|\| 1.14.6, 1.14.10, 1.14.12 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]

BUSCO-Sapelo2

Chelsea — Tue, 16 Jun 2026 14:37:17 GMT

Version

← Older revision		Revision as of 10:37, 16 June 2026
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	2.0, 4.0.5, 5.4.7, 5.5.0, 5.8.2		2.0, 4.0.5, 5.4.7, 5.5.0, 5.8.2
	-->		-->
	5.8.3		5.8.3, 6.0.0

	== Author / Distributor ==		== Author / Distributor ==

Software

Chelsea — Tue, 16 Jun 2026 14:36:58 GMT

← Older revision		Revision as of 10:36, 16 June 2026
(One intermediate revision by the same user not shown)
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	\| [[Bracken-Sapelo2\|Bracken]] \|\| 3.1 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		\| [[Bracken-Sapelo2\|Bracken]] \|\| 3.1 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	\| [[BRAKER-Sapelo2\|BRAKER]] \|\| ~~2.1.6, 3.0.3,~~ 3.0.8 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		\| [[BRAKER-Sapelo2\|BRAKER]] \|\| 3.0.8 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|-		\|-
	<!-- \| [[BreakDancer-Sapelo2\|BreakDancer]] \|\| 1.4.5 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[BreakDancer-Sapelo2\|BreakDancer]] \|\| 1.4.5 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
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	<!-- \| [[BS-Seeker2-Sapelo2\|BS-Seeker2]] \|\| 2.1.5 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[BS-Seeker2-Sapelo2\|BS-Seeker2]] \|\| 2.1.5 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	\| [[BUSCO-Sapelo2\|BUSCO]] \|\| ~~2.0, 4.0.5,~~ 5.4.7, 5.5.0~~, 5.8.2~~ \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		\| [[BUSCO-Sapelo2\|BUSCO]] \|\| 5.8.3, 6.0.0 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|-		\|-
	<!-- \| [[BUSCO-Teaching\|BUSCO]] \|\| 3.0.2 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Teaching\|Teaching]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[BUSCO-Teaching\|BUSCO]] \|\| 3.0.2 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Teaching\|Teaching]] \|\| [[File:Up20.png\|20px\|link=#top]]

BLAST+-Teaching

Chelsea — Tue, 16 Jun 2026 14:18:06 GMT

Version

← Older revision		Revision as of 10:18, 16 June 2026
Line 12:		Line 12:
	2.2.31, 2.10.1, 2.11.0, 2.12.0, 2.13.0, 2.14.0		2.2.31, 2.10.1, 2.11.0, 2.12.0, 2.13.0, 2.14.0
	-->		-->
	2.13.0, 2.14.1, 2.16.0		2.13.0, 2.14.1, 2.16.0, 2.17.0
	== Author / Distributor ==		== Author / Distributor ==

BLAST+-Sapelo2

Chelsea — Tue, 16 Jun 2026 14:17:52 GMT

Software

Chelsea — Tue, 16 Jun 2026 14:17:34 GMT

← Older revision		Revision as of 10:17, 16 June 2026
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	<!-- \| [[BLASR-Sapelo2\|BLASR]] \|\| 2.2 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[BLASR-Sapelo2\|BLASR]] \|\| 2.2 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	\| [[BLAST+-Sapelo2\|BLAST+]] \|\| 2.13.0, 2.14.1, 2.16.0 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\|[[File:Up20.png\|20px\|link=#top]]		\| [[BLAST+-Sapelo2\|BLAST+]] \|\| 2.13.0, 2.14.1, 2.16.0, 2.17.0 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\|[[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	\| [[BLAST+-Teaching\|BLAST+]] \|\| 2.13.0, 2.14.1, 2.16.0 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Teaching\|Teaching]] \|\| [[File:Up20.png\|20px\|link=#top]]		\| [[BLAST+-Teaching\|BLAST+]] \|\| 2.13.0, 2.14.1, 2.16.0, 2.17.0 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Teaching\|Teaching]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|-		\|-
	<!-- \| [[BLAST-Sapelo2\|BLAST]] \|\| 2.2.26 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[BLAST-Sapelo2\|BLAST]] \|\| 2.2.26 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]

BioPython-Sapelo2

Chelsea — Tue, 16 Jun 2026 14:16:58 GMT

Version

← Older revision		Revision as of 10:16, 16 June 2026
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	== Version ==		== Version ==
	1.79, 1.83, 1.84		1.76, 1.79, 1.83, 1.84, 1.85

	== Author / Distributor ==		== Author / Distributor ==

Software

Chelsea — Tue, 16 Jun 2026 14:16:40 GMT

← Older revision		Revision as of 10:16, 16 June 2026
(One intermediate revision by the same user not shown)
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	<!-- \| [[BioPerl-Teaching\|BioPerl]] \|\| 1.7.1 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Teaching\|Teaching]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[BioPerl-Teaching\|BioPerl]] \|\| 1.7.1 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Teaching\|Teaching]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	\| [[BioPython-Sapelo2\|BioPython]] \|\| 1.76, 1.79, 1.80, 1.83, 1.84 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		\| [[BioPython-Sapelo2\|BioPython]] \|\| 1.76, 1.79, 1.80, 1.83, 1.84, 1.85 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	\|[[Biopython-Teaching\|Biopython]] \|\| 1.76, 1.79, 1.80, 1.83, 1.84 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Teaching\|Teaching]] \|\| [[File:Up20.png\|20px\|link=#top]]		\|[[Biopython-Teaching\|Biopython]] \|\| 1.76, 1.79, 1.80, 1.83, 1.84, 1.85 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Teaching\|Teaching]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|-		\|-
	<!-- \| [[Bismark-Sapelo2\|Bismark]] \|\| 0.20.0, 0.22.1, 0.22.3 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[Bismark-Sapelo2\|Bismark]] \|\| 0.20.0, 0.22.1, 0.22.3 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]

Beast-Sapelo2

Chelsea — Tue, 16 Jun 2026 14:15:55 GMT

Version

← Older revision		Revision as of 10:15, 16 June 2026
Line 11:		Line 11:

	<!--1.10.4, 2.5.1, 2.6.3, 2.7.3, 2.7.5-->		<!--1.10.4, 2.5.1, 2.6.3, 2.7.3, 2.7.5-->
	2.7.7		1.10.4, 2.6.7, 2.7.3, 2.7.7, 10.5.0

	== Author / Distributor ==		== Author / Distributor ==

Software

Chelsea — Tue, 16 Jun 2026 14:13:51 GMT

← Older revision		Revision as of 10:13, 16 June 2026
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	<!-- \| [[bcl2fastq-Sapelo2\|bcl2fastq]] \|\| 2.20.0 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[bcl2fastq-Sapelo2\|bcl2fastq]] \|\| 2.20.0 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	\|[[Beast-Sapelo2\|Beast]] \|\| 1.10.4, 2.5.1, 2.6.3, 2.7.3, 2.7.5 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		\|[[Beast-Sapelo2\|Beast]] \|\| 1.10.4, 2.6.7, 2.7.3, 2.7.7, 10.5.0 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	<!-- \| [[BEDOPS-Sapelo2\|BEDOPS]] \|\| 2.4.30 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[BEDOPS-Sapelo2\|BEDOPS]] \|\| 2.4.30 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]

Bactopia-Sapelo2

Chelsea — Tue, 16 Jun 2026 14:11:05 GMT

Version

← Older revision		Revision as of 10:11, 16 June 2026
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	== Version ==		== Version ==
	3.2.0		3.2.0, 4.0.0

	== Author / Distributor ==		== Author / Distributor ==

Software

Chelsea — Tue, 16 Jun 2026 14:10:51 GMT

← Older revision		Revision as of 10:10, 16 June 2026
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	<!-- \| <span id ="B"></span> [[bam2fastx-Sapelo2\|bam2fastx]] \|\| 1.3.0 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| <span id ="B"></span> [[bam2fastx-Sapelo2\|bam2fastx]] \|\| 1.3.0 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	\| \| <span id ="B"></span> [[Bactopia-Sapelo2\|Bactopia]] \|\| 3.2.0 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		\| \| <span id ="B"></span> [[Bactopia-Sapelo2\|Bactopia]] \|\| 3.2.0, 4.0.0 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]
	\|- -->		\|- -->
	<!-- \| [[BamTools-Sapelo2\|BamTools]] \|\| 2.4.1, 2.5.1 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]		<!-- \| [[BamTools-Sapelo2\|BamTools]] \|\| 2.4.1, 2.5.1 \|\| [[:Category:Bioinformatics\|Bioinformatics]] \|\| [[:Category:Sapelo2\|Sapelo2]] \|\| [[File:Up20.png\|20px\|link=#top]]

Training

Chelsea — Tue, 16 Jun 2026 12:38:21 GMT

← Older revision		Revision as of 08:38, 16 June 2026
(2 intermediate revisions by the same user not shown)
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	\|-		\|-
	\|Using Sapelo2 Cluster at the GACRC		\|Using Sapelo2 Cluster at the GACRC
	\|~~May 20th~~, ~~Wednesday~~, 2:00 PM - 4:00 PM		\|June 18th, Thursday, 2:00 PM - 4:00 PM
	\|-		\|-
	\|Using Sapelo2 Cluster at the GACRC		\|Using Sapelo2 Cluster at the GACRC
	\|~~June 5th~~, Friday, 2:00 PM - 4:00 PM		\|July 10th, Friday, 2:00 PM - 4:00 PM
	\|-		\|-
	\|Using Sapelo2 Cluster at the GACRC		\|Using Sapelo2 Cluster at the GACRC
	\|~~June 10th~~, ~~Wednesday~~, 2:00 PM - 4:00 PM		\|July 16th, Thursday, 2:00 PM - 4:00 PM
	\|-		\|-
	\|Using Sapelo2 Cluster at the GACRC		\|Using Sapelo2 Cluster at the GACRC
	\|~~June 18th~~, ~~Thursday~~, 2:00 PM - 4:00 PM		\|July 22nd, Wednesday, 2:00 PM - 4:00 PM
	\|}		\|}

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	\|-		\|-
	\|Use Linux on Cluster		\|Use Linux on Cluster
	\|June ~~3rd~~, Wednesday, 1:00 PM - 3:00 PM		\|June 16th, Tuesday, 1:00 PM - 3:00 PM
			\|-
			\|Use Linux on Cluster
			\|July 8th, Wednesday, 1:00 PM - 3:00 PM
	\|-		\|-
	\|Use Linux on Cluster		\|Use Linux on Cluster
	\|~~June 8th~~, ~~Monday~~, 1:00 PM - 3:00 PM		\|July 14th, Tuesday, 1:00 PM - 3:00 PM
	\|-		\|-
	\|Use Linux on Cluster		\|Use Linux on Cluster
	\|~~June 16th~~, ~~Tuesday~~, 1:00 PM - 3:00 PM		\|July 20th, Monday, 1:00 PM - 3:00 PM
	\|}		\|}

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	\|-		\|-
	\|Using Sapelo2 Cluster at the GACRC, Part II		\|Using Sapelo2 Cluster at the GACRC, Part II
	\|~~April 17th, Friday, 1:00 - 3:00 PM~~		\|
	\|}		\|}

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	\|-		\|-
	\|Installing Software Packages in Virtual Environments on Sapelo2		\|Installing Software Packages in Virtual Environments on Sapelo2
	\|~~April 23rd, Thursday, 2:00 - 3:00 PM~~		\|
	\|}		\|}

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	\|-		\|-
	\|Job Parallelization with GNU Parallel and Slurm Arrays		\|Job Parallelization with GNU Parallel and Slurm Arrays
	\|~~April 30th, Thursday, 1:00 - 2:30 PM~~		\|
	\|}		\|}