Software-old: Difference between revisions

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Below is a partial list of software packages installed on Sapelo2, Teaching (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2/Teaching, along with a short description, please run the following command on Sapelo2/Teaching:
<pre class="gcommand">
module spider
</pre>
You can also use the command above to search for a specific application. For more information, please see [[Lmod]].
'''Note:''' Although we have not made individual software pages for the applications installed on on the Slurm test cluster (Sap2test), there are currently over 550 software packages installed there. For information on software installed there, please see [[Software on sap2test]].
==Installed Software List==
==Installed Software List==
Last updated '''{{REVISIONYEAR}}-{{REVISIONMONTH}}-{{REVISIONDAY2}}'''.
Last updated '''{{REVISIONYEAR}}-{{REVISIONMONTH}}-{{REVISIONDAY2}}'''.
'''Note:''' Click on the icons to the right of the column headings to sort the table.
'''Note:''' Click on the icons to the right of the column headings to sort the table.
 
[[#0|0-9]] [[#A|A]] [[#B|B]] [[#C|C]] [[#D|D]] [[#E|E]] [[#F|F]] [[#G|G]] [[#H|H]] [[#I|I]] [[#J|J]] [[#K|K]] [[#L|L]] [[#M|M]] [[#N|N]] [[#O|O]] [[#P|P]] [[#Q|Q]] [[#R|R]] [[#S|S]] [[#T|T]] [[#U|U]] [[#V|V]] [[#W|W]] [[#X|X]] [[#Y|Y]] [[#Z|Z]]
[[Software Template]]
 
{|  width="100%" border="1"  cellspacing="0" cellpadding="2" align="center"  class="wikitable sortable"
{|  width="100%" border="1"  cellspacing="0" cellpadding="2" align="center"  class="wikitable sortable"
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! scope="col" width="160px"| Category
! scope="col" width="160px"| Category
! scope="col" width="60px"| Cluster
! scope="col" width="60px"| Cluster
! scope="col" | Notes
! scope="col" width="20px"| Top
! scope="col" | Reviewed By
|-
<!--LIST BEGIN-->
<!--
| <span id ="0"></span>[[3D-DNA-sapelo2 |3D-DNA]] || 180922 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[3SEQ-Sapelo2 |3SEQ]] || 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[4p-Sapelo2 |4p]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="A"></span>[[ABySS-Sapelo2|ABySS]] || 1.9.0, 2.0.2, 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ADMIXTURE-Sapelo2|ADMIXTURE]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[aeneas-Sapelo2|aeneas]] || 1.7.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[AFNI-Sapelo2|AFNI]] || 17.3.05 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[AGAT-Sapelo2|AGAT]] || 0.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[AGEnt-Sapelo2|AGEnt]] || 0.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[AIM-HII-Sapelo2|AIM-HII]] || 0.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[albacore-Sapelo2|Albacore]] || 2.3.4-cp35 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[AlignGraph-Sapelo2|AlignGraph]] || 20180709 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[AlleleSeq_pipeline-Sapelo2|AlleleSeq_pipeline]] || 1.2a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ALLHiC-Sapelo2|ALLHiC]] || 0.8.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Allim-Sapelo2|Allim]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ALLMAPS-Sapelo2|ALLMAPS]] || 20190208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[AMBER-Sapelo2|AMBER]] || 14, 16, 18 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!-- | [[AMBER-Teaching|AMBER]] || 14 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!--
| [[AMOS-Sapelo2|AMOS]] || 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Anaconda2-Sapelo2|Anaconda2]] || 5.0.1, 2018.12, 2019.03 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Anaconda3-Sapelo2|Anaconda3]] || 5.0.1, 2018.12, 2019.03 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ANGEL-Sapelo2|ANGEL]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[annovar-Sapelo2|annovar]] || 2017Jul16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ANSYS-Sapelo2|ANSYS]] || 18.2, 19.2 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[antiSMASH-Sapelo2|antiSMASH]] || 4.2.0, 5.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[anvi'o-Sapelo2|anvi'o]] || 4, 5.1, 5.3, 5.4, 6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Apollo-Sapelo2|Apollo]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Aragorn-Sapelo2|Aragorn]] || 1.2.38 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Arlequin-Sapelo2|Arlequin]] || 3.5.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ART-Sapelo2|ART]] || 20160605 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ARCS-Sapelo2|ARCS]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Artemis-Sapelo2|Artemis]] || 17.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
-->
<!-- | [[Artemis-Teaching|Artemis]] || 17.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!--
| [[ASTRAL-Sapelo2|ASTRAL]] || 5.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ATK-Sapelo2|ATk]] || 2.22.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ATLAS-Sapelo2|ATLAS]] || 3.10.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[AUGUSTUS-Sapelo2|AUGUSTUS]] || 3.2.3, 3.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!-- | [[AUGUSTUS-Teaching|AUGUSTUS]] || 3.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!--
| [[AutoVOT-Sapelo2|AutoVOT]] || 0.93 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="B"></span> [[bam2fastx-Sapelo2|bam2fastx]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BamTools-Sapelo2|BamTools]] || 2.4.1, 2.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Barrnap-Sapelo2|Barrnap]] || 0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[basespace-cli-Sapelo2|basespace-cli]] || 0.9.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Basset-Sapelo2|Basset]] || 20200107 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BayesAss-Sapelo2|BayesAss]] || 3.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BayeScan-Sapelo2|BayeScan]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[bax2bam-Sapelo2|bax2bam]] || 0.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Bazel-Sapelo2|Bazel]] || 0.8.1, 0.11.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BBMap-Sapelo2 |BBMap]] || 37.67, 38.73 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BCFtools-Sapelo2|BCFtools]] || 1.1, 1.3.1, 1.6, 1.8, 1.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
-->
<!-- | [[BCFtools-Teaching|BCFtools]] || 1.3.1, 1.6, 1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!--
| [[bcgTree-Sapelo2|bcgTree]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[bcl2fastq-Sapelo2|bcl2fastq]] || 2.20.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Beast-Sapelo2|Beast]] || 1.8.4, 1.10.1, 1.10.3, 1.10.4, 2.4.8pre, 2.4.8, 2.5.0, 2.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BEDOPS-Sapelo2|BEDOPS]] || 2.4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BEDTools-Sapelo2|BEDTools]] || 2.17.0, 2.26.0, 2.28.0, 2.29.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!-- | [[BEDTools-Teaching|BEDTools]] || 2.26.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!--
| [[BerkeleyGW-Sapelo2|BerkeleyGW]] || 2.1 || [[:Category:Physics|Physics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Bioawk-Sapelo2|bioawk]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BioKanga-Sapelo2|BioKanga]] || 21.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Biom-format-Sapelo2|Biom-format]] || 2.1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BionanoSolve-Sapelo2|BionanoSolve]] || 3.2.1-04122018, 3.2.2-08222018 3.3-10252018, 3.4-06042019 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BioPerl-Sapelo2|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!-- | [[BioPerl-Teaching|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BioPython-Sapelo2|BioPython]] || 1.68 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Biopython-Teaching|Biopython]] || 1.75 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
<!--
| [[Bismark-Sapelo2|Bismark]] || 0.20.0, 0.22.1, 0.22.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!-- | [[Bismark-Teaching|Bismark]] || 0.22.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
<!--
| [[Bison-Sapelo2|Bison]] || 2.7, 3.0.2, 3.0.4 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BLASR-Sapelo2|BLASR]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BLAST+-Sapelo2|BLAST+]] || 2.2.31, 2.6.0, 2.7.1, 2.9.0, 2.10.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[BLAST+-Teaching|BLAST+]] || 2.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
<!--
| [[BLAST-Sapelo2|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[BLAST-Teaching|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BLAT-Sapelo2|BLAT]] || 3.4, 3.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BlobTools-Sapelo2|BlobTools]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Blosc-Sapelo2|Blosc]] || 1.12.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BOLT-LMM-Sapelo2|BOLT-LMM]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Boost-Sapelo2|Boost]] || 1.54.0, 1.61.0, 1.63.0, 1.65.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Boto3-Sapelo2|Boto3]] || 1.9.14 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[bowtie2-Sapelo2|bowtie2]] || 2.2.3, 2.3.3, 2.3.4.1, 2.3.4.2, 2.3.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Bowtie2-Teaching|Bowtie2]] || 2.3.5.1, 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Bowtie-Sapelo2|Bowtie]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Bracken-Sapelo2|Bracken]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[braker-Sapelo2|braker]] || 2.0.5, 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BreakDancer-Sapelo2|BreakDancer]] || 1.4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[breseq-Sapelo2|breseq]] || 0.34.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BS-Seeker2-Sapelo2|BS-Seeker2]] || 2.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BUSCO-Sapelo2|BUSCO]] || 2.0, 3.0.2, 4.0.5, 4.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[BUSCO-Sap2test|BUSCO]] || 4.0.5, 4.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sap2test|Sap2test]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[BUSCO-Teaching|BUSCO]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[BWA-Sapelo2|BWA]] || 0.7.15, 0.7.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[BWA-Teaching|BWA]] || 0.7.17, 0.7.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| <span id ="C"></span>[[Caffe-Sapelo2|Caffe]] || 04082018 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cactus-Sapelo2|cactus]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cairo-Sapelo2|cairo]] || 1.14.6, 1.14.10, 1.14.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Canu-Sapelo2|Canu]] || 1.7, 1.7.1, 1.8, 1.9, 2.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[canu-Teaching|Canu]] || 1.4, 1.5, 1.6, 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[CAP-miRSeq-Sapelo2|CAP-miRSeq]] || 05/20184 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CAP3-Sapelo2|CAP3]] || 03092015 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cBar-Sapelo2|cBar]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CD-HIT-Sapelo2|CD-HIT]] || 4.6.1-2012-08-27, 4.6.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cDNA_Cupcake-Sapelo2|CDNA_Cupcake]] || 5.9, 7.2, 8.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CDO-Sapelo2|CDO]] || 1.9.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CellProfiler-Sapelo2|CellProfiler]] || 3.1.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cellrange-Sapelo2|Cellrange]] || 3.0.1, 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CENSOR-Sapelo2|CENSOR]] || 4.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CFITSIO-Sapelo2|CFITSIO]] || 3.38 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CFOUR-Sapelo2|CFOUR]] || 1.2, 2.00-beta, 2.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CGAL-Sapelo2|CGAL]] || 4.11 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cgmaptools-Sapelo2|Cgmaptools]] || 0.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cgview_comparison_tool-Sapelo2|Cgview_comparison_tool]] || 2017.09.19 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CheckM-Sapelo2|CheckM]] || 1.0.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Chimera-Sapelo2|Chimera]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[Chimera-Teaching|Chimera]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Chromosomer-Sapelo2|Chromosomer]] || 0.1.3, 0.1.4a0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[Chromosomer-Teaching|Chromosomer]] || 0.1.4a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[circlator-Sapelo2|circlator]] || 1.5.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Circos-Sapelo2|Circos]] || 0.69-6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cleaveland4-Sapelo2|Cleaveland4]] || 4.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Click-Sapelo2|Click]] || 7.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ClonalFrameML-Sapelo2|ClonalFrameML]] || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ClonalOrigin-Sapelo2|ClonalOrigin]] || 0.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Clust-Sapelo2|Clust]] || 1.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ClustAGE-Sapelo2|ClustAGE]] || 0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Clustal-Omega-Sapelo2|Clustal-Omega]] || 1.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ClustalW2-Sapelo2|ClustalW2]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CMake-Sapelo2|CMake]] || 3.0.0, 3.4.3, 3.5.2, 3.6.1, 3.6.2, 3.7.2, 3.8.0, 3.9.1, 3.9.5, 3.10.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CNIT-Sapelo2|CNIT]] || 2020-05-13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CNVnator-Sapelo2|CNVnator]] || 0.3.3, 0.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cogent-Sapelo2|Cogent]] || 3.5, 3.9, 6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Coinfinder-Sapelo2|Coinfinder]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CONCOCT-Sapelo2|CONCOCT]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Consed-Sapelo2|Consed]] || 29.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cooler-Sapelo2|cooler]] || 0.8.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CPLEX-Sapelo2|CPLEX]] || 12.6.3 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[crest-Sapelo2|crest]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CRISPResso-Sapelo2|CRISPResso]] || 1.0.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CUDA-Sapelo2|CUDA]] || 7.0.28, 7.5.18, 8.0.61, 8.0.61_375.26-GCC-5.4.0-2.26, 9.0.176, 9.1.85, 9.2.88, 10.0.130, 10.1.243 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cuDNN-Sapelo2|cuDNN]] || 7.0.4, 7.2.1.38, 7.4.2.24 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cufflinks-Sapelo2|Cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[Cufflinks-Teaching|Cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[cURL-Sapelo2|cURL]] || 7.49.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[cutadapt-Sapelo2|cutadapt]] || 1.9.1, 1.14, 1.16, 2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cython-Sapelo2|Cython]] || 0.27.3, 0.28.5 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[CythonGSL-Sapelo2|CythonGSL]] || 0.2.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cytoscape-Sapelo2|Cytoscape]] || 3.7.2, 3.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Cytoscape-Teaching|Cytoscape]] || 3.7.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="D"></span>[[Dadi-Sapelo2|Dadi]] || 1.7.0, 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Danpos2-Sapelo2|Danpos2]] || 2.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Darknet-Sapelo2|Darknet]] || 3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DAS_Tool-Sapelo2|DAS_Tool]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[datamash-Sapelo2|datamash]] || 1.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DBG2OLC-Sapelo2|DBG2OLC]] || 20170208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[DBG2OLC-Teaching|DBG2OLC]] || 20170208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[DDocent-Sapelo2|DDocent]] || 2.7.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DDSCAT-Sapelo2|DDSCAT]] || 7.3.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[decontaMiner-Sapelo2|decontaMiner]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[deepTools-Sapelo2|deepTools]] || 3.0.2, 3.2.1, 3.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DeepVariant-Sapelo2|DeepVariant]] || 0.7.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Delft3d-Sapelo2|Delft3d]] || 20190610 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[delineate-Sapelo2|delineate]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DendroPy-Sapelo2|DendroPy]] || 4.3.0, 4.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[detectMITE-Sapelo2|detectMITE]] || 20170425 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[detonate-Sapelo2|detonate]] || 1.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DIAMOND-Sapelo2|DIAMOND]] || 0.8.31, 0.9.19, 0.9.22, 0.9.24, 0.9.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[DIAMOND-Teaching|DIAMOND]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[DISCOVARdenovo-Sapelo2|DISCOVARdenovo]] || 52488 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DIYABC-Sapelo2|DIYABC]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DiscoVista-Sapelo2|DiscoVista]] || 20190429 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Distruct-Sapelo2|Distruct]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DLCpar-Sapelo2|DLCpar]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Domainoid-Sapelo2|Domainoid]] || 20200127 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Doxygen-Sapelo2|Doxygen]] || 1.8.7, 1.8.11, 1.8.13 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[dRep-Sapelo2|dRep]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DSSP-Sapelo2|DSSP]] || 3.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[DyNet-Sapelo2|DyNet]] || 2.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[DyNet-Teaching|DyNet]] || 2.0.3 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| <span id ="E"></span>[[EDGE-pro-Sapelo2|EDGE-pro]] || 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[eggNOG-Mapper-Sapelo2|EggNOG-Mapper]] || 1.0.3, 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Eigen-Sapelo2|Eigen]] || 3.2.3, 3.3.5 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[EIGENSOFT-Sapelo2|EIGENSOFT]] || 6.1.4, 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[EIGENSOFT-Teaching|EIGENSOFT]] || 6.1.4, 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[EMBOSS-Sapelo2|EMBOSS]] || 6.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[EMBOSS-Teaching|EMBOSS]] || 6.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[EMMAX-Sapelo2|EMMAX beta]] || beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Ensembl-VEP-Sapelo2|Ensembl-VEP]] || 20180914 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[EnTAP-Sapelo2|EnTAP]] || 0.8.4 beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[epic2-Sapelo2|epic2]] || 0.0.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[EricScript-Sapelo2|EricScript]] || 0.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ESMF-Sapelo2|ESMF]] || 7.0.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[eSpeak-Sapelo2|eSpeak]] || 1.48.04 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ete-Sapelo2|Ete]] || 3.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[EVcouplings-Sapelo2|EVcouplings]] || 0.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[EVidenceModeler-Sapelo2|EVidenceModeler]] || 0.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Exonerate-Sapelo2 |Exonerate]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[Exonerate-Teaching|Exonerate]] || 2.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| <span id ="F"></span>[[FALCON-Sapelo2|FALCON]] || 02282018_unzip || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Fast-Plast-Sapelo2|Fast-Plast]] || 1.2.6, 1.2.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FASTA-Sapelo2|FASTA]] || 36.3.5e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[fast-GeP-Sapelo2|fast-GeP]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FastME-Sapelo2|FastME]] || 2.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FastQC-Sapelo2|FastQC]] || 0.11.5,0.11.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FastQValidator-Sapelo2|FastQValidator]] || 0.1.1a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FastQ_Screen-Sapelo2|FastQ_Screen]] || 0.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[fastSTRUCTURE-Sapelo2|FastSTRUCTURE]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FastTree-Sapelo2 |FastTree]] || 2.1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FastViromeExplorer-Sapelo2|FastViromeExplorer]] || 20180918 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FASTX-Toolkit-Sapelo2|FASTX-Toolkit]] || 0.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FFmpeg-Sapelo2|FFmpeg]] || 3.1.3, 3.4.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FFTW-Sapelo2|FFTW]] || 3.3.4, 3.3.6, 3.3.7 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FIAT-Sapelo2|FIAT]] || 1.6.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[fineSTRUCTURE-Sapelo2|fineSTRUCTURE]] || 2.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FLASH-Sapelo2|FLASH]] || 1.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FLTK-Sapelo2|FLTK]] || 1.3.4 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Flye-Sapelo2|Flye]] || 2.3.6, 2.6, 2.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FoX-Sapelo2|FoX]] || 4.1.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[freebayes-Sapelo2|Freebayes]] || 1.2.0, 1.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[freebayes-Teaching|Freebayes]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[freesasa-Sapelo2|freesasa]] || 2.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FriBidi-Sapelo2|FriBidi]] || 1.0.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Funannotate-Sapelo2|Funannotate]] || 1.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[FuzzyWuzzy-Sapelo2|FuzzyWuzzy]] || 0.17.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[fxtract-Sapelo2|fxtract]] || 2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="G"></span> [[G2gtools-Sapelo2|g2gtools]] || 0.2.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GAG-Sapelo2|GAG]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[GAG-Teaching|GAG]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[GAMESS-Sapelo2|GAMESS]] || 14Feb2018 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GapFiller-Sapelo2|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[GapFiller-Teaching|GapFiller]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[GAPIT-Sapelo2|GAPIT]] || 20180524 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GAPPadder-Sapelo2|GAPPadder]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GARLI-Sapelo2|GARLI]] || 2.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GATK-Sapelo2|GATK]] || 3.4-0, 3.8-0, 3.8-1, 4.0.3.0, 4.0.11.0, 4.1.0.0, 4.1.2.0, 4.1.5.0, 4.1.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[GATK-Teaching|GATK]] || 3.8-0, 3.4-0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[GAUSSIAN-Sapelo2|GAUSSIAN]] || 09, 16 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GAUSSIAN-Teaching|GAUSSIAN]] || 16 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GaussView-Sapelo2|GaussView]] || 5, 6.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GaussView-Teaching|GaussView]] || 6.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GBlocks-Sapelo2|GBlocks]] || 0.91b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GCTA-Sapelo2 |GCTA]] || 1.26.0, 1.93.0-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GD-Sapelo2|GD]] || 2.66 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GDAL-Sapelo2|GDAL]] || 2.1.0, 2.2.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gdc-client-Sapelo2 |gdc-client]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Gdk-pixbuf-Sapelo2|Gdk-pixbuf]] || 2.36.0 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GEAN-Sapelo2|GEAN]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GEM-Sapelo2|GEM]] || 1.0, 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GEM-library-Sapelo2 |GEM-library]] || 20130406-045632 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GeneMark.hmm.eukaryotic-Sapelo2|GeneMark.hmm.eukaryotic]] || 4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GeneMarkES-Sapelo2|GeneMarkES]] || 4.33, 4.57 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!--| [[GeneMarkES-Teaching|GeneMarkES]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[GeneMarkS-T-Sapelo2|GeneMarkS-T]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GeneMarkS-Sapelo2|GeneMarkS]] || 4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GenericRepeatFinder-Sapelo2|GenericRepeatFinder]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GenMap-Sapelo2|GenMap]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Genocore-Sapelo2|Genocore]] || 2020-05-13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Genome-Sapelo2|Genome]] || Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GenomeTools-Sapelo2|GenomeTools]] || 1.5.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Genrich-Sapelo2|Genrich]] || 0.5, 0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GEOS-Sapelo2|GEOS]] || 3.6.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GET_HOMOLOGUES-Sapelo2|GET_HOMOLOGUES]] || 1.7.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[GET_HOMOLOGUES-Teaching|GET_HOMOLOGUES]] || 1.7.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[GET_PHYLOMARKERS-Sapelo2|GET_PHYLOMARKERS]] || 1.2.11, 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gfaviz-Sapelo2|gfaviz]] || 1.0.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Gffcompare-Sapelo2|Gffcompare]] || 0.10.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gffread-Sapelo2|gffread]] || 0.9.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GFlow-Sapelo2|GFlow]] || 0.1.7 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Ghostscript-Sapelo2|Ghostscript]] || 9.20, 9.22 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GISTIC-Sapelo2|GISTIC]] || 2.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gkin-Sapelo2|Gkin]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GL2PS-Sapelo2|GL2PS]] || 1.4.0 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GLib-Sapelo2|GLib]] || 2.49.5, 2.53.5, 2.54.3 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GLIMMER-Sapelo2|GLIMMER]] || 3.02b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[GLIMMER-Teaching|GLIMMER]] || 3.02b || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[GLPK-Sapelo2|GLPK]] || 4.63, 4.65 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GMAP-GSNAP-Sapelo2|GMAP-GSNAP]] || 2016-11-07, 2018-07-04 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GMP-Sapelo2|GMP]] || 4.3.2, 6.1.1, 6.1.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gnuplot-Sapelo2|gnuplot]] || 5.0.5 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GObject-Introspection-Sapelo2|GObject-Introspection]] || 1.49.1, 1.54.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[grace-Sapelo2|grace]] || 5.1.25 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GraftM-Sapelo2|GraftM]] || 0.11.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GraphicsMagicK-Sapelo2|GraphicsMagicK]] || 1.3.28 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Graphviz-Sapelo2|Graphviz]] || 2.40.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GROCSVs-Sapelo2|GROCSVs]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Gromacs-Sapelo2 |Gromacs]] || 2016.4, 2018.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GSL-Sapelo2|GSL]] || 1.16, 2.1, 2.3. 2.4, 2.5 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GStreamer-Sapelo2|GStreamer]] || 1.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GTDBTk-Sapelo2|GTDBTk]] || 0.2.2, 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[gtftogenepred-Sapelo2|gtftogenepred]] || 377-3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GTK+-Sapelo2|GTK+]] || 2.24.31 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[GTS-Sapelo2|GTS]] || 0.7.6 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Guile-Sapelo2|Guile]] || 1.8.8 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="H"></span>[[h5py-Sapelo2|h5py]] || 2.7.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HapCUT-Sapelo2|HapCUT]] || 0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HapCUT2-Sapelo2|HapCUT2]] || 20190606 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HarfBuzz-Sapelo2|HarfBuzz]] || 1.3.1, 1.7.5 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HARP-Sapelo2|HARP]] || 140925_103521 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[Harvest-Teaching|Harvest]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[HarvestTools-Sapelo2|HarvestTools]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HH-suite-Sapelo2|HH-suite]] || 3.0-beta.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HiC-Pro-Sapelo2|HiC-Pro]] || 2.11.0-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Hinge-Sapelo2|Hinge]] || 0.5.0-4-deb_cv1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[hindex-Sapelo2|hindex]] || 1.42 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HISAT2-Sapelo2|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HISAT2-Teaching|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HMMER-Sapelo2|HMMER]] || 2.3, 3.1b2, 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Homer-Sapelo2|Homer]] || 4.9.1, 4.10, 4.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[Homer-Teaching|Homer]] || 4.9.1, 4.10, 4.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[HPCGridRunner-Sapelo2|HPCGridRunner]] || 1.0.2 || [[:Category:Tools|Tools]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[htop-Sapelo2|htop]] || 2.0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HTSeq-Sapelo2|HTSeq]] || 0.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[HTSeq-Teaching|HTSeq]] || 0.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[HTSlib-Sapelo2|HTSlib]] || 1.3.2, 1.6, 1.8 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HTStream-Sapelo2|HTStream]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HUMAnN2-Sapelo2|HUMAnN2]] || 0.11.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HybPiper-Sapelo2|HybPiper]] || 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[HyPhy-Sapelo2|HyPhy]] || 2.5.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Hypre-Sapelo2|Hypre]] || 2.11.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="I"></span>[[ICORN2-Sapelo2|ICORN2]] || 0.95 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IDBA-UD-Sapelo2|IDBA-UD]] || 1.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IDR-Sapelo2|IDR]] || 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IgBlast-Sapelo2 | IgBlast]] || 1.16.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IGV-Sapelo2 |IGV]] || 2.4.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[IGV-Teaching |IGV]] || 2.4.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[IGVTools-Sapelo2 |IGVTools]] || 2.3.98 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[illumiprocessor-Sapelo2 |illumiprocessor]] || 2.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ImageMagick-Sapelo2|ImageMagick]] || 7.0.5, 7.0.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Infernal-Sapelo2|Infernal]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IonCom-Sapelo2|IonCom]] || 20190521  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[iprscan-Sapelo2|iprscan (InterProScan)]] || 5.29-68.0, 5.31-70.0, 5.32-71.0, 5.41-78.0, 5.44-90.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ipyrad-Sapelo2|ipyrad]] || 0.7.24, 0.7.28, 0.7.30, 0.9.19 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[ipyrad-Teaching|Ipyrad]] || 0.7.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[IPython-Sapelo2|IPython]] || 5.3.0, 6.2.1, 7.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IQ-Tree-Sapelo2|IQ-Tree]] || 1.5.5, 1.6.5, 1.6.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IQ-Tree-Teaching|IQ-Tree]] || 1.6.12|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IRMA-Sapelo2|IRMA]] || 0.6.7, 0.9.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ISGPipeline-Sapelo2|ISGPipeline]] || 0.16.10-3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IsONclust-Sapelo2 |IsONclust]] || 0.0.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[IsoSeq3-Sapelo2|IsoSeq3]] || 3.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ITSTool-Sapelo2|ITSTool]] || 2.0.4 || [[:Category:Utility|Utility]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="J"></span>[[JAGS-Sapelo2|JAGS]] || 4.3.0 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[JasPer-Sapelo2|JasPer]] || 1.900.1, 2.0.12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Java-Sapelo2|Java]] || 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144, 1.8.0_202 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Java-Teaching|Java]] || 1.8.0_144, 1.8.0_241, 11.0.2 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[jcvi-Sapelo2|jcvi]] || 0.8.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Jellyfish-Sapelo2|Jellyfish]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[JModelTest-Sapelo2|JModelTest]] || 2.1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Juicer-Sapelo2|Juicer]] || 1.5.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Julia-Sapelo2|Julia]] || 1.3.1|| [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[JUnit-Sapelo2|JUnit]] || 4.12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Jupyter-Sapelo2|Jupyter]] || 4.3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="K"></span>[[Kaiju-Sapelo2|Kaiju]] || 1.6.2, 1.7.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[kallisto-Sapelo2|kallisto]] || 0.43.1, 0.46.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[kallisto-Teaching|kallisto]] || 0.43.1, 0.46.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[KAT-Sapelo2|KAT]] || 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Kent_tools-Sapelo2|Kent_tools]] || 20190208, 20200512 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[keras-Sapelo2|keras]] || 2.0.6, 2.2.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[KinFin-Sapelo2|KinFin]] || 1.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[KmerGenie-Sapelo2|KmerGenie]] || 1.7044 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[KmerGenie-Teaching|KmerGenie]] || 1.7044 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Kraken2-Sapelo2|Kraken2]] || 2.0.7-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[KronaTools-Sapelo2|KronaTools]] || 2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="L"></span><!-- [[LADR-Teaching|LADR]] || 2009-11A || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| --> [[LAME-Sapelo2|LAME]] || 3.100 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LAMMPS-Sapelo2|LAMMPS]] || 30Jul16, 11Aug17 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LAPACK-Sapelo2|LAPACK]] || 3.6.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LAST-Sapelo2|LAST]] || 956, 959, 1047 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LASTZ-Sapelo2|LASTZ]] || 1.04.00 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LDhat-Sapelo2|LDhat]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LDhelmet-Sapelo2|LDhelmet]] || 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Leafcutter-Sapelo2|Leafcutter]] || 0.2.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Lep-MAP3-Sapelo2|Lep-MAP3]] || 0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[libssh2-Sapelo2|libssh2]] || 1.9.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LibStatGen-Sapelo2|LibStatGen]] || 1.0.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LibTIFF-Sapelo2|LibTIFF]] || 4.0.6, 4.0.8, 4.0.9 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LINKS-Sapelo2|LINKS]] || 1.8.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LittleCMS-Sapelo2|LittleCMS]] || 2.8 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LLVM-Sapelo2|LLVM]] || 3.8.1, 4.0.0, 5.0.1, 6.0.0 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LMDB-Sapelo2|LMDB]] || 0.9.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LoFreq-Sapelo2|LoFreq]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Log-Log4perl-Sapelo2|Log-Log4perl]] || 1.49 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LongRanger-Sapelo2|LongRanger]] || 2.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LoRDEC-Sapelo2|LoRDEC]] || 0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LoRMA-Sapelo2|LoRMA]] || 0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LRCstats-Sapelo2|LRCstats]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[lrslib-Sapelo2|lrslib]] || 6.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LS-DYNA-Sapelo2|LS-DYNA]] || 10.123355 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LS-PrePost-Sapelo2|LS-PrePost]] || 4.5 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LtrDetector-Sapelo2|LtrDetector]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LTR_Finder-Sapelo2|LTR_Finder]] || 1.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LTR_retriever-Sapelo2|LTR_retriever]] || 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LUMPY-Sapelo2|LUMPY]] || 0.2.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[LZO-Sapelo2|LZO]] || 2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="M"></span>[[M4-Sapelo2|M4]] || 1.4.16, 1.4.17, 1.4.17 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MacSyFinder-Sapelo2|MacSyFinder]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Macs2-Sapelo2|MACS2]] || 2.1.1, 2.1.2, 2.2.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MAFFT-Sapelo2|MAFFT]] || 7.273, 7.313, 7.397, 7.407, 7.453, 7.470 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[MAFFT-Teaching|MAFFT]] || 7.130, 7.273, 7.313 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Magic-BLAST-Sapelo2|Magic-BLAST]] || 1.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Magma-GPU-Sapelo2|Magma-GPU]] || 2.3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Magma-Sapelo2|Magma]] || 2.22-9, 2.24-4, 2.25 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[mahotas-Sapelo2|mahotas]] || 1.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MAJIQ-Sapelo2|MAJIQ]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Maker-Sapelo2|Maker]] || 3.01.02-beta,2.31.9, 2.31.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Maker-Sap2test|Maker]] || 3.01.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sap2test|Sap2test]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[Maker-Teaching|Maker]] || 2.31.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Mako-Sapelo2|Mako]] || 1.0.4, 1.0.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MAnorm-Sapelo2|MAnorm]] || 1.1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MARVEL-Sapelo2|MARVEL]] || 20180918 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mash-Sapelo2|Mash]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MashMap-Sapelo2|MashMap]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MaSIF-Sapelo2|MaSIF]] || 20200722 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MaSuRCA-Sapelo2|MaSuRCA]] || 3.2.2, 3.2.9, 3.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mathematica-Sapelo2|Mathematica]] || 12.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MatLab-Sapelo2|Matlab]] || R2017b, R2018b, R2019b || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[MatLab-Teaching|Matlab]] || R2018b || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Matplotlib-Sapelo2|Matplotlib]] || 1.5.3, 2.0.2, 2.1.0, 2.1.2, 2.2.3, 3.0.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mauve-Sapelo2|Mauve]] || 2015-02-13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Maven-Sapelo2|Maven]] || 3.5.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mawk-Sapelo2|Mawk]] || 1.3.4|| [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MaxBin-Sapelo2|MaxBin]] || 2.2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MCL-Sapelo2|MCL]] || 14.137 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MCScanX-Sapelo2 |MCScanX]] || 0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Medaka-Sapelo2 |Medaka]] || 0.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Medusa-Sapelo2 |Medusa]] || 1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MEGA-Sapelo2 |MEGA]] || 7.0.26-1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MEGAHIT-Sapelo2 |MEGAHIT]] || 1.1.1, 1.1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Megalodon-Sapelo2|Megalodon]] || 0.1.0, 1.0.0, 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[Megam-Teaching|Megam]] || 0.92 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[MeGAMerge-Sapelo2|MeGAMerge]] || 3.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MEME-Sapelo2|MEME]] || 4.11.0, 5.0.0_1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Meraculous-Sapelo2|Meraculous]] || 2.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mercurial-Sapelo2 |Mercurial]] || 4.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mesa-Sapelo2 |Mesa]] || 12.0.2, 17.3.6 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MET-Sapelo2 |MET]] || 7.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MetaBAT-Sapelo2|MetaBAT]] || 2.12.1, 2.15-4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[METABOLIC-Sapelo2|METABOLIC]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MetaCLADE-Sapelo2|MetaCLADE]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MetaPhlAn-Sapelo2|MetaPhlAn]] || 1.7.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MetaPhlAn2-Sapelo2|MetaPhlAn2]] || 2.7.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[methylpy-Sapelo2|methylpy]] || 1.2.9, 1.3.2, 1.4.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[METIS-Sapelo2|METIS]] || 5.1.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MG-RAST-Tools-Sapelo2 |MG-RAST-Tools]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[minced-Sapelo2|minced]] || 0.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Minia-Sapelo2|Minia]] || 3.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[miniasm-Sapelo2|miniasm]] || 0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[miniasm-Teaching|miniasm]] || 0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Miniconda3-Sapelo2|Miniconda3]] || 4.4.10 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[minimap2-Sapelo2|minimap2]] || 2.10, 2.13, 2.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[minimap2-Teaching|minimap2]] || 2.10, 2.13, 2.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[MinPath-Sapelo2|MinPath]] || 1.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MIonSite-Sapelo2|MIonSite]] || 20190528 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mip-Sapelo2|mip]] || 1.7.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Mirdeep-p-Sapelo2|mirdeep-p]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MiRDeep2-Sapelo2|miRDeep2]] || 0.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[miRDP2-Sapelo2|MiRDP2]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MISO-Sapelo2|MISO]] || 0.5.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MITE-Hunter-Sapelo2|MITE-Hunter]] || 11-2011 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MITE-Tracker-Sapelo2|MITE-Tracker]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MITObim-Sapelo2|MITObim]] || 1.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MitoZ-Sapelo2|MitoZ]] || 2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[mmquant-Sapelo2|mmquant]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Montreal Forced Aligner-Sapelo2|Montreal Forced Aligner]] || 1.0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[MOTECC_qmdcp-Teaching|MOTECC_qmdcp]] || 90 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Mothur-Sapelo2|Mothur]] || 1.39.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[motif-Sapelo2|motif]] || 2.3.5, 2.3.8 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MPJ-Express-Sapelo2|MPJ-Express]] || 0.44 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MrBayes-Sapelo2|MrBayes]] || 3.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MREPS-Sapelo2|MREPS]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[ms-Teaching|ms]] || 20140304 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[MSG-Sapelo2|MSG]] || 0.4.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[MSG-Teaching|MSG]] || 0.4.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[MSTmap-Sapelo2|MSTmap]] || 20181130 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MultiQC-Sapelo2|MultiQC]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MUMmer-Sapelo2|MUMmer]] || 3.23, 4.0.0beta2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[MUMmer-Teaching|MUMmer]] || 3.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[MUSCLE-Sapelo2|MUSCLE]] || 3.8.1551, 3.8.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MuTect-Sapelo2|MuTect]] || 1.1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[MuTect-Teaching|MuTect]] || 1.1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[muver-Sapelo2|muver]] || 0.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[mvqtlcim-Sapelo2|mvqtlcim]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[MZmine2-Sapelo2|MZmine2]] || 2.40.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="N"></span> [[NAL_RNA_seq_annotation-Sapelo2|NAL_RNA_seq_annotation]] ||20200728 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NAMD-Sapelo2|NAMD]] || 2.13 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Nanocorr-Sapelo2|Nanocorr]] || 5.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NanoFilt-Sapelo2|NanoFilt]] || 2.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NanoPlot-Sapelo2|NanoPlot]] || 1.26.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Nanopolish-Sapelo2|Nanopolish]] || 0.10.2, 0.11.1, 0.12.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NASM-Sapelo2|NASM]] || 2.11, 2.12, 2.13 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NBO-Sapelo2|NBO]] || 7.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NCCL-Sapelo2|NCCL]] || 2.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NCL-Sapelo2|NCL]] || 6.4.0, 6.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[NCL-Teaching|NCL]] || 6.4.0, 6.5.0  || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[ncview-Sapelo2|ncview]] || 2.1.7 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NCO-Sapelo2|NCO]] || 4.7.4 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[NCO-Teaching|NCO]] || 4.7.4 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Necklace-Sapelo2|Necklace]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NeEstimator-Sapelo2|NeEstimator]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Neptune-Sapelo2|Neptune]] || 1.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NetSurfP-Sapelo2|NetSurfP]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Newbler-Sapelo2|Newbler]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Nextflow-Sapelo2|Nextflow]] || 18.10.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NextGenMap-Sapelo2|NextGenMap]] || 0.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ngmlr-Sapelo2|ngmlr]] || 0.2.6-beta || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NGmerge-Sapelo2|NGmerge]] || 0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NGS-Sapelo2|NGS]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NGSEPcore-Sapelo2|NGSEPcore]] || 3.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ngsplot-Sapelo2|ngsplot]] || 2.6.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NGSQCToolkit-Sapelo2|NGSQCToolkit]] || 2.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[nhPhyML-Sapelo2|nhPhyML]] || 20180515 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NiBabel-Sapelo2|NiBabel]] || 2.2.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[nistats-Sapelo2|nistats]] || 0.0.1a0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NLopt-Sapelo2|NLopt]] || 2.4.2 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Nseg-Sapelo2|Nseg]] || 20180530 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NucleoATAC-Sapelo2|NucleoATAC]] || 0.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[NWChem-Sapelo2|NWChem]] || 6.8 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="O"></span>[[Oases-Sapelo2|Oases]] || 0.2.08, 0.2.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[OCaml-Sapelo2|OCaml]] || 4.01.0, 4.02.3 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Ont-Guppy-Sapelo2|Ont-Guppy]] || 3.2.4, 4.0.11, 4.0.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[OpenBUGS-Sapelo2|OpenBUGS]] || 3.2.3 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[OpenCV-Sapelo2|OpenCV]] || 3.4.1, 3.4.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[OpenJPEG-Sapelo2|OpenJPEG]] || 2.3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[OpenSlide-Sapelo2|OpenSlide]] || 3.4.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[OpenSlide-Python-Sapelo2|OpenSlide-Python]] || 1.1.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ORCA-Sapelo2 |ORCA]] || 3.0.3, 4.0.0.2, 4.0.1.2, 4.1.0, 4.1.1, 4.2.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[OrfM-Sapelo2|OrfM]] || 0.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[OrganelleRef_PBA-Sapelo2|OrganelleRef_PBA]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ORGanelle_ASeMbler-Sapelo2|ORGanelle_ASeMbler]] || 0.2.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ORGanelle_ASeMbler-Sapelo2|ORGASM]] || 0.2.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[ORP-Sapelo2|ORP]] || 2.0.0, 2.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[OrthoFinder-Sapelo2|OrthoFinder]] || 2.1.2, 2.2.7, 2.3.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[OrthoFinder-Teaching|OrthoFinder]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[OrthoMCL-Sapelo2|OrthoMCL]] || 2.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| <span id ="P"></span>[[p7zip-Sapelo2|p7zip]] || 16.02 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PAGIT-Sapelo2|PAGIT]] || 1.64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Pairix-Sapelo2|Pairix]] || 0.3.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pairtools-Sapelo2|pairtools]] || 0.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Pal_finder-Sapelo2|Pal_finder]] || 0.02.04 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PAML-Sapelo2|PAML]] || 4.9h || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PAML-Teaching|PAML]] || 4.9i || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PANDAseq-Sapelo2 |PANDAseq]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Pangloss-Sapelo2 |Pangloss]] || 0.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Pango-Sapelo2 |Pango]] || 1.40.3, 1.41.1 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Panoply-Sapelo2|Panoply]] || 4.11.6 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Parliament2-Sapelo2|Parliament2]] || 0.1.8, 0.1.11, hgsc || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Parsnp-Sapelo2|Parsnp]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PartitionFinder-Sapelo2|PartitionFinder]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[PartitionFinder-Teaching|PartitionFinder]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[PanOCT-Sapelo2|PanOCT]] || 3.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PASA-Sapelo2|PASA]] || 2.3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PASTA-Sapelo2|PASTA]] || 1.8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
<!-- | [[PASTA-Teaching|PASTA]] || 1.8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[PAUP-Sapelo2|PAUP]] || 4a165_centos64, 4a166_centos64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pb-assembly-Sapelo2|Pb-assembly]] || 0.0.2, 0.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pbh5tools-Sapelo2 |pbh5tools]] || 0.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PBLAT-Sapelo2|PBLAT]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pbmm2-Sapelo2|pbmm2]] || 1.0.0, 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[pcawg-dkfz-workflow-Sapelo2|pcawg-dkfz-workflow]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PBSuite-Sapelo2 |PBSuite]] || 15.8.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PCRE-Sapelo2 |PCRE]] || 8.38, 8.39, 8.41 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PeakRanger-Sapelo2|PeakRanger]] || 1.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PEAR-Sapelo2|PEAR]] || 0.9.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Perl-Sapelo2|Perl]] || 5.20.3, 5.24.0, 5.24.1, 5.26.0, 5.26.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[Perl-Teaching|Perl]] || 5.30.0 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PETSc-Sapelo2|PETSc]] || 3.8.4 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
| [[PGDBG-Sapelo2|PGDBG]] || 18.10 || [[:Category:Debugger|Debugger]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[00-Skipped Page]] || 0.0 || Work Log || GACRC || YH Created  ||  
| [[PGDSpider-Sapelo2|PGDSpider]] || 2.1.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[3D_DOCK]] || 2.0 || Chemistry || pcluster || Ignored by SMW,  || clear, SHT
| [[PhaseGenomics-Sapelo2|PhaseGenomics]] || 20181220 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[454 Software]] || || Bioinformatics || zcluster || Done, SMW || clear, YH 
| [[phaser-Sapelo2 |phaser]] || 1.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[aaarf]] || 1.0.0 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[PhaseTank-Sapelo2|PhaseTank]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[ABINIT]] || 6.12.1 || Chemistry || zcluster || Done, SMW || clear, SHT 
| [[PHASIS-Sapelo2 |PHASIS]] || 3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[ABySS]] || 1.3.4 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[PHENIX-Sapelo2|PHENIX]] || 1.18.2-3874 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[ALLPATHS-LG]] || 44254 || Bioinformatics || zcluster || Contains Dead Links, SMW || clear, YH 
| [[Phobius-Sapelo2|Phobius]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[AMBER]] || 11, 12 || Chemistry || zcluster || Done, SHT || clear, SHT
| [[Phred/Phrap/Conced-Sapelo2|Phred/Phrap/Conced]] || Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[AMBER-pcluster]] || 8 || Chemistry || pcluster || JKP ||  
| [[Phycas-Sapelo2|Phycas]] || 2.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[amos]] || 3.1.0 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[PHYLIP-Sapelo2|PHYLIP]] || 3.697 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[ARB]] || 5.3 || Bioinformatics || zcluster || ?, Please Review Running Program Section, SMW || clear, YH
| [[PhyloBayes-MPI-Sapelo2 |PhyloBayes-MPI]] || 20161021 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[AUGUSTUS]] || 2.5.5 || Bioinformatics || zcluster || Please verify Documentation Section, SMW || clear, YH 
| [[PhyloCSF-Sapelo2 |PhyloCSF]] || 20180919 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[bam2fastq]] || 1.1.0 || Bioinformatics || zcluster || Done, SMW || clear, YH 
| [[PhyloSift-Sapelo2 |PhyloSift]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[BEAST]] || 1.7.2 || Bioinformatics || zcluster || Done, with Dead Links, SMW || clear, YH 2/7 8:30 am YH 
| [[PhyloSkeleton-Sapelo2 |PhyloSkeleton]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[BEDTools]] || 2.16.2 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[phyluce-Sapelo2|Phyluce]] || 1.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[BEST Bayesian]] || 2.3.1 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[PhyML-Sapelo2|PhyML]] || 3.3.20170530 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Bio++]] || 2.0.3 || Bioinformatics || zcluster || working, SHT ||
| [[PhyParts-Sapelo2|PhyParts]] || 0.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[BioPerl]] || 1.61 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[picard-Sapelo2 |picard]] || 2.16.0, 2.21.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[BioPython]] || 1.58 || Bioinformatics || zcluster || Done, SMW || clear, YH
<!-- | [[picard-Teaching|Picard]] || 2.16.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[PICRUSt-Sapelo2 |PICRUSt]] || 1.1.3, 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Bismark Bisulfite Mapper]] || 0.7.6 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[pigz-Sapelo2|pigz]] || 2.3.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[BiSS]] || 0.0.1 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[PIL-Sapelo2|PIL]] || 1.1.7 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[BLAS]] || 3.0 || Math Library || zcluster || Done, SHT || clear, SHT
| [[PILER-Sapelo2|PILER]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Blat]] || 3.5 || Bioinformatics || zcluster || Done, SMW || clear, YH 
| [[Pilon-Sapelo2|Pilon]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[BMGE]] || 1.1 || Bioinformatics || zcluster || Done, SMW || clear, YH 
<!-- | [[pilon-Teaching|Pilon]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[PlantCV-Sapelo2|PlantCV]] || 3.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Boost]] || 1.47.0, 1.48.0 || Library || zcluster || Done, SHT || clear, SHT
| [[Platypus-Sapelo2|Platypus]] || 0.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[bowtie]] || 0.12.8 || Bioinformatics || zcluster || Done, SMW || clear, YH 
| [[PLEK-Sapelo2|PLEK]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[bowtie2]] || 2.0.0-beta7 || Bioinformatics || zcluster || Done, SMW || clear, YH 
| [[PLINK-Sapelo2|PLINK]] || 1.07, 1.9b, 2.0-alpha1, 2.0-alpha2, 2.0-alpha2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[breakdancer]] || 1.1_2011_02_21 || Bioinformatics || zcluster || Done, SMW || clear, YH 
| [[plmc-Sapelo2|Plmc]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[brownie]] || 2.1.2 || Bioinformatics || zcluster || Done, SMW || clear, YH 
| [[Porechop-Sapelo2|Porechop]] || 0.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[BS Seeker]] || Dec 113 || Bioinformatics || zcluster || Done, SMW || clear, YH 
| [[PoSSuMsearch-Sapelo2|PoSSuMsearch]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Burrows-Wheeler Aligner (BWA)]] || 0.6.2 || Bioinformatics || zcluster || Done, SMW || clear, YH 
| [[pplacer-Sapelo2|Pplacer]] || 1.1.alpha19 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[cd-hit]] || 4.5.6 || Bioinformatics || zcluster || Done, SMW || clear, YH 
| [[Praat-Sapelo2|Praat]] || 6048-Linux64-nogui || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[cdbfasta]] || 04282012 || Bioinformatics || zcluster || Done, SMW || clear, YH 
| [[PRANK-Sapelo2|PRANK]] || 170427 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[CEAS]] || 1.0.2 || Bioinformatics || zcluster || Done, SMW || clear, YH 
| [[PRAPI-Sapelo2|PRAPI]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[CEGMA]] || 2.4.010312 || Bioinformatics || zcluster || Done, SMW || clear, YH 
| [[Primer3-Sapelo2|Primer3]] || 2.3.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[circos]] || 0.62 || Bioinformatics || zcluster || Done, SMW || clear, YH 
| [[PRINSEQ-Sapelo2|PRINSEQ]] || 0.20.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[ClustalW]] || 2.1 || Bioinformatics || zcluster || Done, SMW || clear, YH 
| [[ProbABEL-Sapelo2|ProbABEL]] || 0.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Coding Potential Calculator]] || 0.9-r2 || Bioinformatics || zcluster || Done, SMW || clear, YH  2/8 3:35pm
| [[prodigal-Sapelo2|Prodigal]] || 2.6.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[CONSEL]] || v0.20 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[progressiveCactus-Sapelo2|progressiveCactus]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[cortex_con]] || 0.04c || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[ProphET-Sapelo2 |ProphET]] || 20200323 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[cortex_var]] || 1.0.5.3 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[PROJ-Sapelo2|PROJ]] || 4.9.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Count]] || 2010-04-02 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[Prokka-Sapelo2|Prokka]] || 1.13, 1.14.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[CREST]] || 1.0 || Bioinformatics || zcluster || Done, SMW || clear, YH
<!-- | [[Prokka-Teaching|Prokka]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[proovread-Sapelo2|proovread]] || 2.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[ctrax]] || 0.3.2 || Other || zcluster || Done, SMW || clear, YH
<!-- | [[proovread-Teaching|Proovread]] || 2.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[protobuf-Sapelo2|protobuf]] || 3.3.0, 3.4.0, 3.6.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[cufflinks]] || 2.0.2 || Bioinformatics || zcluster || Done, SMW || clear, YH
<!-- | [[LADR-Teaching|prover9]] || 2009-11A || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[PSI4-Sapelo2|PSI4]] || 1.3.2 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[cutadapt]] || 1.1 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[psmc-Sapelo2|psmc]] || 0.6.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[DLCoal]] || 1.0 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[pVACtools-Sapelo2|pVACtools]] || 1.5.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[drmma]] || 0.5 || Other || zcluster || Done, SMW || clear, YH
| [[pyani-Sapelo2|pyani]] || 0.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[ea-utils]] || 1.1.2-537 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[pybedtools-Sapelo2|pybedtools]] || 0.7.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[edena]] || 3Dev120626 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[PyCUDA-Sapelo2|PyCUDA]] || 2019.1.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[EMBOSS]] || 6.2.0 || Bioinformatics || zcluster || || clear, YH
| [[pyDNA-Sapelo2|pyDNA]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[emmix]] || 1.3 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[pydub-Sapelo2|pydub]] || 0.22.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[ESTscan]] || 3.0.3 || Bioinformatics || zcluster || Done, YH || clear, YH 
| [[pyfasta-Sapelo2|pyfasta]] || 0.5.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[evm (EVidenceModeler)]] || r2012-06-25 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[PyMOL-Sapelo2|PyMOL]] || 2.3.0a0 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[ExaML]] || 315576 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[PyNBS-Sapelo2 |pyNBS]] || 0.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[exonerate]] || 2.2.0 || Bioinformatics || zcluster || Done, SMW || clear, YH
<!-- | [[Pynini-Teaching|Pynini]] || 2.0.8 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[PyPy-Sapelo2 |PyPy]] || 6.0.0 (2.7.14) || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[FAR]] || 2.15 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[Pysam-Sapelo2 |Pysam]] || 0.10.0, 0.13.0, 0.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[FASTA]] || 36 || Bioinformatics || zcluster || Done, with Dead Links, SMW || clear, YH
| [[Python-Sapelo2 |Python]] || 2.7.12, 2.7.14, 3.5.2, 3.6.4, 3.7.0, 3.7.2, 3.7.4, 3.8.2 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[fasta format cleaner]] || 1.0 || Bioinformatics || zcluster || Done, YH || clear, YH
| [[Python-Teaching|Python]] || 3.7.4, 2.7.16 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[FastQC]] || 0.10.1 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[PyTorch-Sapelo2|PyTorch]] || 0.3.1, 1.0.0, 1.2.0, 1.3.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[fasttree]] || 2.1.4 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[pyvcf-Sapelo2 |pyvcf]] || 0.6.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[FastX]] || 0.0.13,  0.0.13.2 || Bioinformatics || zcluster || Done, SMW || clear, YH
<!-- | [[Pweave-Teaching|Pweave]] || 0.30.3 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| <span id ="Q"></span>[[q2-brocc-Sapelo2|q2-brocc]] || 2018.6.0.dev0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[FIRE]] || 1.1 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[QCTOOL-Sapelo2|QCTOOL]] || 2.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[FitModel]] || 0.5.3 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[qiaseq-16S-Sapelo2|qiaseq-16S]] || 20190306 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[FFTW]] || 2.1.5, 3.3.0 || Math Library || zcluster || Done, SHT || clear, YH
| [[QIIME2-Sapelo2|QIIME2]] || 2018.2, 2018.4, 2018.6, 2018.8, 2018.11, 2019.1, 2020.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[FLASH]] || 1.0.3 || Bioinformatics || zcluster || Done, SMW || clear, YH
<!-- | [[QIIME2-Teaching|QIIME2]] || 2018.4, 2018.6, 2018.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[QIIME-Sapelo2|QIIME]] || 1.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[GAMESS]] || May2012R1 with XMVB 2.0. || Chemistry || zcluster || JKP ||  
| [[QTLcartographer-Sapelo2|QTLcartographer]] || 1.17j || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[GAMESS-pcluster]] || 2007 R6 || Chemistry  || pcluster || DNP ||  
| [[Qualimap2-Sapelo2|Qualimap2]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[GapFiller]] || 1.11 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[Quantum Espresso-Sapelo2|Quantum Espresso]] || 6.2.0, 6.3.0-QMCPACK-3.6.0-patch, 6.4.1, 6.5 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[gatk]] || 2.2-2-gf44cc4e || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[QUAST-Sapelo2|QUAST]] || 4.2, 4.6.1, 4.6.3, 5.0.0, 5.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[GAUSSIAN03]] || 03 || Chemistry || pcluster || DNP ||  
| [[QMCPACK-Sapelo2|QMCPACK]] || 3.6.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[GAUSSIAN94]] || 94 || Chemistry || pcluster || JKP ||  
| <span id ="R"></span>[[R-Sapelo2 |R]] || 3.4.4, 3.5.0, 3.6.1, 3.6.2, 4.0.0 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Gblocks]] || 0.91b || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[R-Teaching|R]] || 4.0.0 || [[:Category:Statistics|Statistics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[GDB]] || 7.0.1 || Debugger || zcluster || Done, SHT || clear, SHT
| [[racon-Sapelo2 |racon]] || 20180406, 1.3.2, 1.4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[GeneMark]] || genemark-ES 2.3e gGeneMark version 2.5m || Bioinformatics || zcluster || Done, SMW || clear, YH
<!-- | [[racon-Teaching |racon]] || 1.4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|- -->
| [[RaGOO-Sapelo2|RaGOO]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Genome]] || Phred version: 0.071220.c || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[randfold-Sapelo2|randfold]] || 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[GenomeMapper]] || 0.4.3 (Version for SHORE/WMD3) || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[RATT-Sapelo2|RATT]] || 20180710 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[GenomeTools]] || 1.3.9 || Bioinformatics || zcluster || Done, SMW || clear, YH
| [[RAxML-NG-Sapelo2 |RAxML-NG]] || 0.7.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[git]] || 1.7.4.1, 1.7.9 || Others || zcluster || skipped, JKP ||  
| [[RAxML-Sapelo2 |RAxML]] || 8.2.4, 8.2.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Glimmer]] || 3.0.2 || Bioinformatics || zcluster || JKP || clear, YH
| [[RAxML-Teaching|RAxML]] || 8.2.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[GlimmerHMM]] || 3.0.1 || Bioinformatics || zcluster || JKP || clear, YH
| [[Ray-Sapelo2 |Ray]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[gmap]] || 2007-09-28 || Bioinformatics || zcluster || DNP || clear, YH
| [[Rcorrector-Sapelo2|Rcorrector]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[gmap-gsnap]] || 2012-07-20 || Bioinformatics || zcluster || DNP || clear, YH
| [[Realphy-Sapelo2|Realphy]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[gnuplot]] || 4.0, 4.6.0 || Graphics || zcluster || Done, SHT || clear, SHT
| [[Reapr-Sapelo2|REAPR]] || 1.0.18 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[gprof]] || 2.17 || Profiler || zcluster || Done, SHT || clear, SHT
| [[RECON-Sapelo2|RECON]] || 1.08 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[gpu-blast]] || 1.1 with ncbi-blast-2.2.25+ || Bioinformatics || zcluster || JKP || clear, YH
| [[RedDog-Sapelo2|RedDog]] || 1beta.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[grace]] || 5.1.22 || Other || zcluster || JKP ||  
| [[Redundans-Sapelo2|Redundans]] || 0.14a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Gromacs]] || 4.5.5 || Chemistry || zcluster || Done, SHT || clear, SHT
| [[RepeatExplorer-TAREAN-Sapelo2|RepeatExplorer-TAREAN]] || 11/09/2018 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[GSL]] || 1.9, 1.15 || Math Library || zcluster || Done, SHT || clear, SHT
| [[RepeatMasker-Sapelo2|RepeatMasker]] || 4.0.5, 4.0.7, 4.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[gss]] || || Bioinformatics || zcluster || skipped, DNP ||  
<!-- | [[RepeatMasker-Teaching|RepeatMasker]] || 4.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Repeatmodeler-Sapelo2|Repeatmodeler]] || 1.0.11, 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[HDF5]] || 1.6.4, 1.8.9 || Other || zcluster || JKP ||  
<!-- | [[RepeatModeler-Teaching|RepeatModeler]] || 1.0.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[RepeatScout-Sapelo2|RepeatScout]] || 1.05 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Hmmer]] || 3.0 || Bioinformatics || zcluster || DNP || clear, YH
<!-- | [[RepeatScout-Teaching|RepeatScout]] || 1.05 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|- -->
| [[REPET-Sapelo2|REPET]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[htseq]] || 0.5.3p3 || Bioinformatics || zcluster || JKP || clear, YH
| [[RESCRIPt-Sapelo2|RESCRIPt]] || 20200805 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[igb]] || 6.7.3 || Bioinformatics || zcluster || DNP || clear, YH
| [[RevBayes-Sapelo2|RevBayes]] || 1.0.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[IGV]] || 2.1.23 || Bioinformatics || zcluster || JKP || clear, YH
<!-- | [[RevBayes-Teaching|RevBayes]] || 1.0.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[RGAugury-Sapelo2|RGAugury]] || 20191115 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[IMa]] || May 06 || Bioinformatics || pcluster || DNP || clear, YH
| [[rjags-Sapelo2|rjags]] || 4.6 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[indel-Seq-Gen]] || 2.02 || Bioinformatics || zcluster || JKP || clear, YH
| [[RMBlast-Sapelo2|RMBlast]] || 2.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[InStruct]] || 3.2.09 || Bioinformatics || zcluster || JKP || clear, YH
| [[Rmpi-Sapelo2|Rmpi]] || 0.6-6 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[iprscan (InterProScan)]] || 5.0 CR2 || Bioinformatics || zcluster || DNP || clear, YH
| [[RNAmmer-Sapelo2|RNAmmer]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[iscan]] || 1.0.0 || Bioinformatics || zcluster || JKP || clear, YH
| [[RNAz-Sapelo2|RNAz]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Jellyfish]] || 1.1.5 || Bioinformatics || zcluster || DNP || clear, YH
| [[Roary-Sapelo2 |Roary]] || 3.12.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[k-link]] || 03 27, 2009 || Bioinformatics || zcluster || DNP || clear, YH
| [[Rosetta-Sapelo2 |Rosetta]] || 2017.45.59812, 2019.47.61047 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[LAPACK]] || 3.0, 3.4.2 || Math Library || zcluster || Done, SHT || clear, SHT
| [[RSEM-Sapelo2 |RSEM]] || 1.3.0, 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[LASTZ]] || 1.03.02 || Bioinformatics || zcluster || JKP || clear, YH
| [[RSeQC-Sapelo2 |RSeQC]] || 3.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[LDDist]] || 1.3.2 || Bioinformatics || zcluster || DNP || clear, YH
| [[Rstudio-Sapelo2|Rstudio]] || 1.1.463, 1.2.5033 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[libsequence]] || 1.7.4 || Bioinformatics || zcluster || JKP || clear, YH
| [[Ruby-Sapelo2|Ruby]] || 2.5.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[LLVM-Clang]] || 3.1 || Compiler || zcluster || JKP ||  
| [[runBNG-Sapelo2|runBNG]] || 1.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[lsa]] || 11182011 || Bioinformatics || zcluster || DNP || clear, YH
| [[Sailfish-Sapelo2|Sailfish]] || 0.10.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[macs]] || 1.4.2 || Bioinformatics || zcluster || DNP || clear, YH
| <span id ="S"></span>[[Sage-Sapelo2|Sage]] || 8.0, 9.0, 9.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[mafft]] || 6.864b || Bioinformatics || zcluster || JKP || clear, YH
| [[Salmon-Sapelo2|Salmon]] || 0.8.2, 0.10.2, 0.13.1, 0.14.1, 1.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[maker]] || 2.10 || Bioinformatics || zcluster || DNP || clear, YH
| [[SalmonTools-Sapelo2|SalmonTools]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Maple-pcluster]] || 10.06 || Other || pcluster || DNP ||  
| [[SALSA-Sapelo2|SALSA]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MAQ]] || 0.7.1 || Bioinformatics || zcluster || JKP || clear, YH
| [[sambamba-Sapelo2|sambamba]] || 0.6.6, 0.6.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Mathematica]] || 5.2 || Other || pcluster || DNP ||  
| [[samblaster-Sapelo2|samblaster]] || 0.1.24 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MatLab]] || R2012a (7.14.0.739) || Other || zcluster || JKP ||  
| [[SAMtools-Sapelo2|SAMtools]] || 0.1.19, 1.1, 1.3.1, 1.6, 1.9, 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MCL]] || 12-135 || Bioinformatics || zcluster || DNP || clear, YH
| [[SAMtools-Teaching|SAMtools]] || 0.1.20, 1.9, 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MEAD]] || 2.2.9 || Chemistry || zcluster || JKP ||  
| [[SANN-Sapelo2|SANN]] || 20190528 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[megan]] || 4.67.2 || Bioinformatics || zcluster || JKP || clear, YH
| [[sbt-Sapelo2|sbt]] || 1.1.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MEME]] || 4.8.1 || Bioinformatics || zcluster || DNP || clear, YH
| [[scala-Sapelo2|scala]] || 2.12.4 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Migrate]] || 3.0.3 || Bioinformatics || zcluster || JKP  || clear, YH
| [[scikit-image-Sapelo2|scikit-image]] || 0.13.1, 0.14.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Minia]] || 1.4683 || Bioinformatics || zcluster || JKP || clear, YH
| [[Scoary-Sapelo2|Scoary]] || 1.6.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MIRA]] || 3.9.9 || Bioinformatics || zcluster || DNP || clear, YH
| [[SCons-Sapelo2|SCons]] || 2.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MKL]] || 2013 || Math Library || zcluster || working, SHT ||
| [[SCOTCH-Sapelo2|SCOTCH]] || 6.0.4 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MOTECC qmdcp]] || 90 || Chemistry || zcluster || JKP ||  
| [[scram-Sapelo2|scram]] || 0.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MOTECC qmdcp pcluster ]] || 90 || Chemistry || pcluster || JKP ||  
| [[screen_assembly-Sapelo2|screen_assembly]] || 1.2.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MOTHUR]] || 1.28.0 || Bioinformatics || zcluster || DNP || clear, YH
| [[SeaDAS-Sapelo2|SeaDAS]] || 7.5.3 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[mpi4py]] || 1.3 || Utilities || zcluster || JKP ||  
| [[seaview-Sapelo2|seaview]] || 4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[mpiblast]] || 1.6.0 || Bioinformatics || zcluster || JKP || clear, YH
| [[selscan-Sapelo2|selscan]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MrBayes]] || 3.1.2 || Bioinformatics || zcluster || DNP || clear, YH
| [[Seq-Gen-Sapelo2|Seq-Gen]] || 1.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[mrfast]] || 2.5.0.4 || Bioinformatics || zcluster || JKP || clear, YH
| [[SeqKit-Sapelo2|SeqKit]] || 0.10.1, 0.10.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MSA]] || 3.8.1b || Bioinformatics || zcluster || DNP || clear, YH
<!-- | [[SeqKit-Teaching|SeqKit]] || 0.10.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[seqqs-Sapelo2|seqqs]] || 20140225 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MUSCLE]] || 3.8.31 || Bioinformatics || zcluster || JKP || clear, YH
| [[seqtk-Sapelo2|seqtk]] || 1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[MyScanACE]] || 04232012 || Bioinformatics || zcluster || JKP || clear, YH
| [[SGA-Sapelo2|SGA]] || 0.10.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[NAMD]] || 2.9 || Chemistry || zcluster || JKP ||  
| [[Shannon-Sapelo2|Shannon]] || 20190826 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[NAMD-pcluster]] || 2.6b2, 2.7b1 || Chemistry || pcluster || DNP ||  
| [[shapeit-Sapelo2|shapeit]] || v2.r904 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[NCBI Blast]] || 2.2.26 || Bioinformatics || zcluster || Done, YH  || clear, YH
| [[Shasta-Sapelo2|Shasta]] || 0.2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[NCBI Blast +]] || 2.2.26 || Bioinformatics || zcluster || DNP || clear, YH
| [[ShortStack-Sapelo2|ShortStack]] || 3.8.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[ncbi blast parsers]] || || Bioinformatics || zcluster || JKP, missing information || clear, YH
| [[Sibelia-Sapelo2|Sibelia]] || 3.0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[NETCDF]] || 4.1.3 || Other || zcluster || JKP ||  
| [[SICER-Sapelo2|SICER]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[NETCDF-pcluster]] || 3.5.1, 3.6.2 || Other || pcluster || JKP ||  
| [[SICERpy-Sapelo2|SICERpy]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[netlogo]] || 5.0 || Other || zcluster || JKP ||  
| [[Sickle-Sapelo2|Sickle]] || 1.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Newbler]] || 2.6 || Bioinformatics || zcluster || JKP || clear, YH
| [[SignalP-Sapelo2|SignalP]] || 4.1f || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Ngsutils]] || 0.5.0c || Bioinformatics || zcluster || YH || clear, YH
| [[Silix-Sapelo2|Silix]] || 1.2.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[NH PhyloBayes]] || 0.2.3 || Bioinformatics || zcluster || JKP || clear, YH
| [[SimLoRD-Sapelo2|SimLoRD]] || 1.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[nhPhyML]] || 01/2012 || Bioinformatics || zcluster || DNP || clear, YH
| [[SINE_Scan-Sapelo2|SINE_Scan]] || 1.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[NovelSeq]] || 1.0.2 || Bioinformatics || zcluster || DNP || clear, YH
| [[slda-Sapelo2|slda]] || 0.1.6 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[NovoAlign]] || 2.07 || Bioinformatics || zcluster || JKP || clear, YH
| [[smoke-Sapelo2|smoke]] || 4.5 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[numexp]] || 1.4.2 || Other || zcluster || JKP ||  
| [[Smoove-Sapelo2|Smoove]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[NWCHEM]] || 4.7 || Chemistry || pcluster || JKP ||  
| [[SMRTLINK-Sapelo2|SMRTLINK]] || 5.1.0.26412, 6.0.0.47841, 7.0.1.66975, 8.0.0.79519 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Oases]] || 0.2.02 || Bioinformatics || zcluster || JKP || clear, YH
<!-- | [[SMRTLINK-Teaching|SMRTLINK]] || 5.0.1.9585, 5.1.0.26412 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Smudgeplot-Sapelo2|Smudgeplot]] || 0.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[opal]] || 2.0.0 || Bioinformatics || zcluster || JKP || clear, YH
| [[Snakemake-Sapelo2|Snakemake]] || 5.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Open Babel]] || 2.3.1 || Chemistry || zcluster || JKP ||  
| [[SNAP-Zoe-Sapelo2|SNAP-Zoe]] || 20060728 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[OpenBUGS]] || 3.2.2 || Statistics || zcluster || JKP ||  
<!-- | [[SNAP-Zoe-Teaching|SNAP-Zoe]] || 20060728 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Sniffles-Sapelo2|Sniffles]] || 1.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[OpenCV]] || 2.3.1 || Other || zcluster || JKP ||  
| [[SnoReport-Sapelo2|SnoReport]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[OSPREY]] || 2.0 || Bioinformatics || zcluster || JKP || clear, YH
| [[Snippy-Sapelo2|Snippy]] || 4.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[p4]] || r231 || Bioinformatics || zcluster || JKP || clear, YH
| [[SNP-ML-Sapelo2|SNP-ML]] || 1.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[pagan]] || 0.39 || Bioinformatics || zcluster || JKP || clear, YH
| [[snpEff-Sapelo2|snpEff]] || 4.3t || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[PAML]] || 4.4 || Bioinformatics || zcluster || JKP || clear, YH
<!-- | [[snpEff-Teaching|SnpEff]] || 4.3t || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[SNPhylo-Sapelo2|SNPhylo]] || 20160204 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[pandaseq]] || 2.0 || Bioinformatics || zcluster || JKP || clear, YH 2/8 3:35pm
| [[snp-sites-Sapelo2|snp-sites]] || 2.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Papara_nt]] || 2.1.2 || Bioinformatics || zcluster || JKP || clear, YH
| [[SOAPaligner-Sapelo2 |SOAPaligner]] || 2.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[PASHA]] || 1.0.6 || Bioinformatics || zcluster || JKP || clear, YH
| [[SOAPdenovo2-Sapelo2|SOAPdenovo2]] || r240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[PeakSplitter]] || 1.0 || Bioinformatics || zcluster || JKP || clear, YH
<!-- | [[SOAPdenovo2-Teaching|SOAPdenovo2]] || r240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[somaticseq-Sapelo2|somaticseq]] || 3.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[pebl]] || 1.01 || || zcluster || skipped, JKP || clear, YH
| [[SOP-GPU-Sapelo2|SOP-GPU]] || 20180404 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Perl]] || 5.14.1 || Programming Language || zcluster || Done, SHT ||  
| [[SortMeRNA-Sapelo2|SortMeRNA]] || 2.1, 3.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Pfam_scan]] || 04282012 || Bioinformatics || zcluster || JKP || clear, YH
| [[SoX-Sapelo2|SoX]] || 14.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[pftools]] || 2.3.5 || Bioinformatics || zcluster || JKP || clear, YH
| [[SPAdes-Sapelo2|SPAdes]] || 3.11.1, 3.12.0, 3.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[PGDBG]] || 12.10 || Debugger || zcluster || Done, SHT || clear, SHT
<!-- | [[SPAdes-Teaching|SPAdes]] || 3.11.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[spams-Sapelo2|spams]] || 2.6.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[PGPROF]] || 12.10 || Profiler || zcluster || Done, SHT || clear, SHT
| [[Spanki-Sapelo2|Spanki]] || 0.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[phred/phrap/conced]] || || Bioinformatics || zcluster || JKP, not enough information || clear, YH
| [[Spark-Sapelo2|Spark]] || 2.2.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Phyldog]] || || Bioinformatics || zcluster || Done, SHT || clear, SHT
| [[Speciesprimer-Sapelo2|Speciesprimer]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[PhyloBayes]] || 3.3b || Bioinformatics || zcluster || JKP || clear, YH
| [[SpeedSeq-Sapelo2|SpeedSeq]] || 0.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[PHYML]] || 20110919 || Bioinformatics || zcluster || JKP || clear, YH
| [[Spine-Sapelo2|Spine]] || 0.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[picard]] || 1.62 || Bioinformatics || zcluster || JKP || clear, YH
| [[SpliceGrapher-Sapelo2|SpliceGrapher]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[pileup]] || 0.6 || Bioinformatics || zcluster || || clear, YH
| [[Splitstree4-Sapelo2|Splitstree4]] || 4.16.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[prank]] || 100802 || Bioinformatics || zcluster || JKP || clear, YH
| [[SPM-Sapelo2|SPM]] || 12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Primer3]] || 2.3.4 || Bioinformatics || zcluster || JKP || clear, YH
| [[SRAToolKit-Sapelo2 |SRAToolKit]] || 2.8.2-1, 2.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[pysam]] || 0.6 || Bioinformatics || zcluster || JKP || clear, YH
| [[sRNAWorkbench-Sapelo2|sRNAWorkbench]] || 4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[PyTables]] || 2.3.1 || Other || zcluster || JKP ||  
| [[SSAHA2-Sapelo2 |SSAHA2]] || 2.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Python]] || 2.4.3, 2.7.2, 3.3.0 || Programming Language || zcluster || Done, SHT ||
<!-- | [[SSPACE-longread-Teaching|SSPACE-longread]] || 1-1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
| [[SSPACE-STANDARD-Teaching|SSPACE-STANDARD]] || 3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[SSPACE-Sapelo2|SSPACE]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Qiime]] || 1.6.0 || Bioinformatics || zcluster || JKP || clear, YH
| [[Stacks-Sapelo2|Stacks]] || 1.48, 2.2, 2.3, 2.3b, 2.3d, 2.3e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[QTL Cartographer]] || 1.17j || Bioinformatics || zcluster || JKP || clear, YH
<!-- | [[Stacks-Teaching|Stacks]] || 2.0, 1.48 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Stampy-Sapelo2|Stampy]] || 1.0.31 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[quake]] || 0.3.4 || Bioinformatics || zcluster || JKP || clear, YH
| [[STAR-Fusion-Sapelo2|STAR-Fusion]] || 1.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Quantum Espresso]] || 5.0.2 || Chemistry || zcluster || JKP ||  
| [[STAR-Sapelo2|STAR]] || 2.5.3a, 2.6.0c, 2.6.1c, 2.7.1a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[R]] || 2.14.0, 2.15.0, 2.15.2 || Statistics  || zcluster || Done, SHT || clear, SHT
<!-- | [[STAR-Teaching|STAR]] || 2.5.3a, 2.6.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[StrAuto-Sapelo2|StrAuto]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[R-pcluster]] || 1.9.1, 2.1.1, 2.4.0 || || pcluster || JKP ||  
| [[StringTie-Sapelo2|StringTie]] || 1.3.3, 1.3.4d, 2.0.3, 2.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[RAxML]] || 04/26/2012 || Bioinformatics || zcluster || JKP || clear, YH
| [[StringTie-Teaching|StringTie]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[RAxML-Light]] || 1.0.5 || Bioinformatics || zcluster || JKP || clear, YH
| [[Structure-Sapelo2|Structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Ray]] || 1.6.1-0 || Bioinformatics || zcluster || skipped, JKP ||  
<!-- | [[Structure-Teaching|Structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Subread-Sapelo2|Subread]] || 1.6.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[RCCBatchBlast]] || 5.0 || Bioinformatics || zcluster || JKP || clear, YH
| [[SUNTANS-Sapelo2|SUNTANS]] || 20180305 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[RCCBatchBlastPlus]] || 1.0 || Bioinformatics || zcluster || done, YH  || clear, YH
| [[Supernova-Sapelo2|Supernova]] || 2.0.1, 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[RECON]] || 1.05 || Bioinformatics || zcluster || JKP || clear, YH
| [[SUPPA-Sapelo2|SUPPA]] || 2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Repeatmasker]] || 3.3 || Bioinformatics || zcluster || JKP || clear, YH
| [[SVDetect-Sapelo2|SVDetect]] || 0.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[RepeatScout]] || 1.05 || Bioinformatics || zcluster || JKP || clear, YH
| [[svtools-Sapelo2|svtools]] || 0.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[riboPicker]] || 0.4.3 || Bioinformatics || zcluster || JKP || clear, YH
| [[SWIG-Sapelo2|SWIG]] || 3.0.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[RMBlast]] || 2.2.27 || Bioinformatics || zcluster || JKP || clear, YH
| [[Synima-Sapelo2|Synima]] || 20181205 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Rmpi]] || 0.5-9 || Statistics || zcluster || JKP ||  
| <span id ="T"></span>[[Tabix-Sapelo2|Tabix]] || 0.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[RNAz]] || 2.1 || Bioinformatics || zcluster || JKP || clear, YH
| [[TASSEL-Sapelo2|TASSEL]] || 5.2.44 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[rnnotator]] || 2.4.12 || Bioinformatics || zcluster || JKP || clear, YH
| [[Tbl2asn-Sapelo2|Tbl2asn]] || 04172018, 03282019, 05012020 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Roche]] || 2.6 || Bioinformatics || zcluster || JKP, dead link in description || clear, YH
| [[TCSF_IMRA-Sapelo2|TCSF_IMRA]] || 1.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[RSAT | RSAT (RSA-tools)]] || 1.0 || Bioinformatics || zcluster || JKP || clear, YH
| [[TensorFlow-models-Sapelo2|TensorFlow-models]] || 20180620 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[RSEM]] || 1.1.21, 1.2.0 || Bioinformatics || zcluster || JKP || clear, YH
| [[TensorFlow-Sapelo2|TensorFlow]] || 1.8.0, 1.10.1, 1.12.0, 1.14 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[RUM]] || 1.11 || Bioinformatics || zcluster || JKP, Verify GACRC Support Form link || clear, YH
| [[Theano-Sapelo2|Theano]] || 0.9.0, 1.0.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Sage]] || 3.1.1, 3.4.1 || Other  || zcluster || skipped, JKP ||  
| [[TigMint-Sapelo2|TigMint]] || 1.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[samtools]] || 0.1.18 || Bioinformatics || zcluster || JKP || clear, YH
| [[TMHMM-Sapelo2|TMHMM]] || 2.0c || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SAS]] || 9.1 || Statistics || zcluster || JKP ||  
| [[tmux-Sapelo2|tmux]] || 2.9 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SATé]] || 2.2.4 || Bioinformatics || zcluster || || clear, YH
| [[Tombo-Sapelo2|Tombo]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SEQuel]] || 1.0.2 || Bioinformatics || zcluster || JKP || clear, YH
| [[Tophat-Sapelo2|Tophat]] || 2.1.0, 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SHE-RA]] || 012012 || Bioinformatics || zcluster || JKP, Dead links || clear, YH
<!-- | [[TopHat-Teaching|TopHat]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[torchvision-Sapelo2|torchvision]] || 0.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SHORE]] || 0.8 || Bioinformatics || zcluster || JKP || clear, YH
| [[TPP-Sapelo2|TPP]] || 5.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[sickle]] || 1.200 || Bioinformatics || zcluster || JKP || clear, YH
| [[tqdm-Sapelo2|tqdm]] || 4.43.0, 4.44.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SiZer]] || 07022012 || Bioinformatics || zcluster || JKP || clear, YH
| [[TransDecoder-Sapelo2|TransDecoder]] || 2.1.0, 5.3.0, 5.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[slclust]] || 04282012 || Bioinformatics || zcluster || JKP || clear, YH
| [[Transposome-Sapelo2|Transposome]] || 0.12.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SNAP]] || 2010-7-28 || Bioinformatics || zcluster || JKP || clear, YH
| [[Transrate-Sapelo2|Transrate]] || 1.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[snow]] || 0.3-8 || Statistics || zcluster || JKP ||  
| [[Transrate-Sapelo2|Transrate]] || 1.0.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[snowhite]] || 1.1.4 || Bioinformatics || zcluster || JKP || clear, YH
| [[TreeMix-Sapelo2|TreeMix]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[snpEff]] || 2_0_5d || Bioinformatics || zcluster || JKP || clear, YH 2/7 8:30 am YH
| [[TreeTime-Sapelo2|TreeTime]] || 0.6.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SOAPdenovo]] || 1.05 || Bioinformatics || zcluster || JKP || clear, YH
| [[trimAl-Sapelo2|TrimAl]] || 1.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SOAPdenovo-trans]] || 1.01 || Bioinformatics || zcluster || JKP || clear, YH
| [[Trimmomatic-Sapelo2|Trimmomatic]] || 0.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SOAPdenovo2]] || r223 || Bioinformatics || zcluster || JKP  || clear, YH
<!-- | [[Trimmomatic-Teaching|Trimmomatic]] || 0.36 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Trim_Galore-Sapelo2|Trim_Galore]] || 0.4.5, 0.6.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SomaticCall]] || 42811 || Bioinformatics || zcluster || JKP || clear, YH
| [[Trinity-Sapelo2|Trinity]] || r20140717, 2.5.1, 2.6.6, 2.8.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[spimap]] || 1.1 || Bioinformatics || zcluster || JKP || clear, YH
<!-- | [[Trinity-Teaching|Trinity]] || 2.6.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Trinotate-Sapelo2|Trinotate]] || 3.1.1, 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SpliceGrapher]] || 0.2.0 || Bioinformatics || zcluster || JKP || clear, YH
| [[tRNAscan-SE-Sapelo2|TRNAscan-SE]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SSAHA2]] || 2.5.5 || Bioinformatics || zcluster || JKP || clear, YH
| <span id ="U"></span>[[UCLUST-Sapelo2|UCLUST]] || 1.2.22q || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SSPACE]] || 2.0 || Bioinformatics || zcluster || JKP || clear, YH
| [[ucsc-Sapelo2|ucsc]] || 359 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[stacks]] || 0.9993, 0.9996 || Bioinformatics || || || clear, YH
| [[UMI-tools-Sapelo2|UMI-tools]] || 1.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[STEM]] || 2.0 || Bioinformatics || zcluster || JKP || clear, YH
| [[UPP-Sapelo2|UPP]] || 3.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[strauto]] || 0.3.1 || Bioinformatics || zcluster || JKP || clear, YH
| [[USEARCH-Sapelo2|USEARCH]] || 10.0.240 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[structure]] || 2.3.3 || Bioinformatics || zcluster || JKP || clear, YH
| [[Unicycler-Sapelo2|Unicycler]] || 0.4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SVDetect]] || r0.7m || Bioinformatics || zcluster || JKP ? || clear, YH
| <span id ="V"></span>[[VarScan-Sapelo2|VarScan]] || 2.4.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SWIG]] || 2.0.5 || Utilities || zcluster || JKP ||  
| [[VCF-kit-Sapelo2|VCF-kit]] || 0.1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[T-Coffee]] || 9.03.r1318 || Bioinformatics || zcluster || JKP || clear, YH
| [[vcf2diploid-Sapelo2|vcf2diploid]] || 0.2.6a || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[tabix]] || 0.2.5 || Bioinformatics || zcluster || JKP || clear, YH
| [[vcf2maf-Sapelo2|vcf2maf]] || 20200520 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[tagdust]] || 1.12 || Bioinformatics || zcluster || JKP ? || clear, YH
| [[vcf2phylip-Sapelo2|vcf2phylip]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[tassel]] || 4.0 || Bioinformatics || zcluster || JKP || clear, YH
| [[vcflib-Sapelo2|vcflib]] || 20180410 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[tgicl]] || 2.1 || Bioinformatics || zcluster || JKP || clear, YH
| [[VCFtools-Sapelo2|VCFtools]] || 0.1.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[TIGER]] || 1.02 || Bioinformatics || zcluster || JKP || clear, YH
<!-- | [[VCFtools-Teaching|VCFtools]] || 0.1.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[Velvet-Sapelo2|Velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[tophat]] || 2.0.5 || Bioinformatics || zcluster || JKP || clear, YH
<!-- | [[Velvet-Teaching|Velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[VelvetOptimiser-Sapelo2|VelvetOptimiser]] || 2.2.5, 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Tracer]] || v 1.5 || Bioinformatics || zcluster || JKP || clear, YH
| [[ViennaRNA-Sapelo2|ViennaRNA]] || 2.4.3, 2.4.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Trinity]] || r2012-10-05 || Bioinformatics || zcluster || JKP || clear, YH
| [[ViewBS-Sapelo2|ViewBS]] || 0.1.7, 0.1.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[UNAFold]] || 3.8 || Bioinformatics || zcluster || JKP ? || clear, YH
| [[Vmatch-Sapelo2|Vmatch]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[usearch]] || v6.0.30 || Bioinformatics || zcluster || JKP || clear, YH
| [[VSEARCH-Sapelo2|VSEARCH]] || 2.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[vcftools]] || 0.1.10 || Bioinformatics || zcluster || Done, JKP || clear, YH
| <span id ="W"></span>[[WGS-Sapelo2|WGS]] || 8.3rc2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[velvet]] || 1.2.01 || Bioinformatics || zcluster || JKP || clear, YH
| [[WASP-Sapelo2|WASP]] || 0.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[VelvetOptimiser]] || 2.2.4 || Bioinformatics || zcluster || JKP || clear, YH
| [[WebLogo-Sapelo2|WebLogo]] || 3.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[ViennaRNA]] || 1.8.5 || Bioinformatics || zcluster || JKP || clear, YH
| [[WEKA-Sapelo2|WEKA]] || 3.8.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[virtualenv]] || 1.8.1 || Other || zcluster || YH || clear, YH
| [[WPS-Sapelo2|WPS]] || 3.8 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[vmatch]] || 2.1.6 || Bioinformatics || zcluster || JKP || clear, YH
<!-- | [[WPS-Teaching|WPS]] || 3.8 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[WRF-Chem-Sapelo2|WRF-Chem]] || 3.6.1, 3.8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[VMD]] || 1.9.1 || Chemistry || zcluster || skipped, JKP ||  
| [[WRF-Fire-Sapelo2|WRF-Fire]] || 20170221 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[wigToBigWig]] || v 4 || Bioinformatics || zcluster || JKP || clear, YH
| [[WRF-Sapelo2|WRF]] || 3.6.1, 3.8.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[WISE2]] || 2.2.0 || Bioinformatics || zcluster || JKP || clear, YH
<!-- | [[WRF-Teaching|WRF]] || 3.8 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[WU Blast]] || 2.2.6 || Bioinformatics || zcluster || JKP || clear, YH
| [[WRFDA-Teaching|WRFDA]] || 3.8 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|- -->
| [[WU Blast-Sapelo2|WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[yasra]] || 2.3 || Bioinformatics || zcluster || JKP || clear, YH
| <span id ="X"></span> <!-- [[xdot-Teaching|xdot]] || 1.1 || [[:Category:Graphics|Graphics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Zz-example]] || 0.0 || Bioinformatics || zcluster || example for bioinformatics YH ||  
| --> [[xforms-Sapelo2|xforms]] || 1.2.4 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Zz-template]] || 0.0 || Bioinformatics || zcluster || Template for bioinformatics YH ||  
| <span id ="Y"></span>[[YASRA-Sapelo2|YASRA]] || 2.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
<!--LIST END-->
|}
|}
[[#top|Back To Top]] [[File:Up20.png|20px|link=#top]]


[[Category:Zcluster]][[Category:Pcluster]]
[[Category:Sapelo2]][[Category:Teaching]][[Category:Software]]

Latest revision as of 22:18, 27 October 2020

Below is a partial list of software packages installed on Sapelo2, Teaching (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2/Teaching, along with a short description, please run the following command on Sapelo2/Teaching: 

module spider

You can also use the command above to search for a specific application. For more information, please see Lmod.

Note: Although we have not made individual software pages for the applications installed on on the Slurm test cluster (Sap2test), there are currently over 550 software packages installed there. For information on software installed there, please see Software on sap2test.


Installed Software List

Last updated 2020-10-27. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name Version Category Cluster Top
Biopython 1.75 Bioinformatics Teaching Up20.png
BLAST+ 2.9.0 Bioinformatics Teaching Up20.png
BLAST 2.2.26 Bioinformatics Teaching Up20.png
BLAT 3.4, 3.5 Bioinformatics Sapelo2 Up20.png
BlobTools 1.1.1 Bioinformatics Sapelo2 Up20.png
Blosc 1.12.1 Library Sapelo2 Up20.png
BOLT-LMM 2.3.4 Bioinformatics Sapelo2 Up20.png
Boost 1.54.0, 1.61.0, 1.63.0, 1.65.1 Library Sapelo2 Up20.png
Boto3 1.9.14 Other Sapelo2 Up20.png
bowtie2 2.2.3, 2.3.3, 2.3.4.1, 2.3.4.2, 2.3.5.1 Bioinformatics Sapelo2 Up20.png
Bowtie2 2.3.5.1, 2.4.1 Bioinformatics Teaching Up20.png
Bowtie 1.2.2 Bioinformatics Sapelo2 Up20.png
Bracken 2.2 Bioinformatics Sapelo2 Up20.png
braker 2.0.5, 2.1.2 Bioinformatics Sapelo2 Up20.png
BreakDancer 1.4.5 Bioinformatics Sapelo2 Up20.png
breseq 0.34.1 Bioinformatics Sapelo2 Up20.png
BS-Seeker2 2.1.5 Bioinformatics Sapelo2 Up20.png
BUSCO 2.0, 3.0.2, 4.0.5, 4.0.6 Bioinformatics Sapelo2 Up20.png
BUSCO 4.0.5, 4.0.6 Bioinformatics Sap2test Up20.png
BWA 0.7.15, 0.7.17 Bioinformatics Sapelo2 Up20.png
Caffe 04082018 Other Sapelo2 Up20.png
cactus 1.0 Bioinformatics Sapelo2 Up20.png
cairo 1.14.6, 1.14.10, 1.14.12 Bioinformatics Sapelo2 Up20.png
Canu 1.7, 1.7.1, 1.8, 1.9, 2.1 Bioinformatics Sapelo2 Up20.png
CAP-miRSeq 05/20184 Bioinformatics Sapelo2 Up20.png
CAP3 03092015 Bioinformatics Sapelo2 Up20.png
cBar 1.2 Bioinformatics Sapelo2 Up20.png
CD-HIT 4.6.1-2012-08-27, 4.6.8 Bioinformatics Sapelo2 Up20.png
CDNA_Cupcake 5.9, 7.2, 8.4 Bioinformatics Sapelo2 Up20.png
CDO 1.9.7 Other Sapelo2 Up20.png
CellProfiler 3.1.8 Bioinformatics Sapelo2 Up20.png
Cellrange 3.0.1, 3.1.0 Bioinformatics Sapelo2 Up20.png
CENSOR 4.2.29 Bioinformatics Sapelo2 Up20.png
CFITSIO 3.38 Library Sapelo2 Up20.png
CFOUR 1.2, 2.00-beta, 2.1 Chemistry Sapelo2 Up20.png
CGAL 4.11 Library Sapelo2 Up20.png
Cgmaptools 0.1.1 Bioinformatics Sapelo2 Up20.png
Cgview_comparison_tool 2017.09.19 Bioinformatics Sapelo2 Up20.png
CheckM 1.0.12 Bioinformatics Sapelo2 Up20.png
Chimera 1.13 Bioinformatics Sapelo2 Up20.png
Chromosomer 0.1.3, 0.1.4a0 Bioinformatics Sapelo2 Up20.png
circlator 1.5.3 Bioinformatics Sapelo2 Up20.png
Circos 0.69-6 Bioinformatics Sapelo2 Up20.png
Cleaveland4 4.4 Bioinformatics Sapelo2 Up20.png
Click 7.0 Other Sapelo2 Up20.png
ClonalFrameML 1.11 Bioinformatics Sapelo2 Up20.png
ClonalOrigin 0.0.1 Bioinformatics Sapelo2 Up20.png
Clust 1.9.0 Bioinformatics Sapelo2 Up20.png
ClustAGE 0.8 Bioinformatics Sapelo2 Up20.png
Clustal-Omega 1.2.4 Bioinformatics Sapelo2 Up20.png
ClustalW2 2.1 Bioinformatics Sapelo2 Up20.png
CMake 3.0.0, 3.4.3, 3.5.2, 3.6.1, 3.6.2, 3.7.2, 3.8.0, 3.9.1, 3.9.5, 3.10.2 Other Sapelo2 Up20.png
CNIT 2020-05-13 Bioinformatics Sapelo2 Up20.png
CNVnator 0.3.3, 0.4.1 Bioinformatics Sapelo2 Up20.png
Cogent 3.5, 3.9, 6.0 Bioinformatics Sapelo2 Up20.png
Coinfinder 1.0.1 Bioinformatics Sapelo2 Up20.png
CONCOCT 1.1.0 Bioinformatics Sapelo2 Up20.png
Consed 29.0 Bioinformatics Sapelo2 Up20.png
cooler 0.8.5 Bioinformatics Sapelo2 Up20.png
CPLEX 12.6.3 Engineering Sapelo2 Up20.png
crest 1.0 Bioinformatics Sapelo2 Up20.png
CRISPResso 1.0.13 Bioinformatics Sapelo2 Up20.png
CUDA 7.0.28, 7.5.18, 8.0.61, 8.0.61_375.26-GCC-5.4.0-2.26, 9.0.176, 9.1.85, 9.2.88, 10.0.130, 10.1.243 Programming Sapelo2 Up20.png
cuDNN 7.0.4, 7.2.1.38, 7.4.2.24 Programming Sapelo2 Up20.png
Cufflinks 2.2.1 Bioinformatics Sapelo2 Up20.png
cURL 7.49.1 Other Sapelo2 Up20.png
cutadapt 1.9.1, 1.14, 1.16, 2.6 Bioinformatics Sapelo2 Up20.png
Cython 0.27.3, 0.28.5 Programming Sapelo2 Up20.png
CythonGSL 0.2.2 Other Sapelo2 Up20.png
Cytoscape 3.7.2, 3.8.0 Bioinformatics Sapelo2 Up20.png
Cytoscape 3.7.2 Bioinformatics Teaching Up20.png
Dadi 1.7.0, 2.0.2 Bioinformatics Sapelo2 Up20.png
Danpos2 2.2.2 Bioinformatics Sapelo2 Up20.png
Darknet 3 Other Sapelo2 Up20.png
DAS_Tool 1.1.1 Bioinformatics Sapelo2 Up20.png
datamash 1.7 Other Sapelo2 Up20.png
DBG2OLC 20170208 Bioinformatics Sapelo2 Up20.png
DDocent 2.7.8 Bioinformatics Sapelo2 Up20.png
DDSCAT 7.3.2 Chemistry Sapelo2 Up20.png
decontaMiner 1.2 Bioinformatics Sapelo2 Up20.png
deepTools 3.0.2, 3.2.1, 3.3.1 Bioinformatics Sapelo2 Up20.png
DeepVariant 0.7.0 Bioinformatics Sapelo2 Up20.png
Delft3d 20190610 Other Sapelo2 Up20.png
delineate 1.2.2 Bioinformatics Sapelo2 Up20.png
DendroPy 4.3.0, 4.4.0 Bioinformatics Sapelo2 Up20.png
detectMITE 20170425 Bioinformatics Sapelo2 Up20.png
detonate 1.11 Bioinformatics Sapelo2 Up20.png
DIAMOND 0.8.31, 0.9.19, 0.9.22, 0.9.24, 0.9.31 Bioinformatics Sapelo2 Up20.png
DISCOVARdenovo 52488 Bioinformatics Sapelo2 Up20.png
DIYABC 2.1.0 Bioinformatics Sapelo2 Up20.png
DiscoVista 20190429 Bioinformatics Sapelo2 Up20.png
Distruct 2.2 Bioinformatics Sapelo2 Up20.png
DLCpar 1.0 Bioinformatics Sapelo2 Up20.png
Domainoid 20200127 Bioinformatics Sapelo2 Up20.png
Doxygen 1.8.7, 1.8.11, 1.8.13 Other Sapelo2 Up20.png
dRep 2.3.0 Bioinformatics Sapelo2 Up20.png
DSSP 3.0.7 Bioinformatics Sapelo2 Up20.png
DyNet 2.1 Other Sapelo2 Up20.png
EDGE-pro 1.3.1 Bioinformatics Sapelo2 Up20.png
EggNOG-Mapper 1.0.3, 2.0.1 Bioinformatics Sapelo2 Up20.png
Eigen 3.2.3, 3.3.5 Library Sapelo2 Up20.png
EIGENSOFT 6.1.4, 7.2.1 Bioinformatics Sapelo2 Up20.png
EMBOSS 6.6.0 Bioinformatics Sapelo2 Up20.png
EMMAX beta beta Bioinformatics Sapelo2 Up20.png
Ensembl-VEP 20180914 Bioinformatics Sapelo2 Up20.png
EnTAP 0.8.4 beta Bioinformatics Sapelo2 Up20.png
epic2 0.0.36 Bioinformatics Sapelo2 Up20.png
EricScript 0.5.5 Bioinformatics Sapelo2 Up20.png
ESMF 7.0.2 Other Sapelo2 Up20.png
eSpeak 1.48.04 Other Sapelo2 Up20.png
Ete 3.1.1 Bioinformatics Sapelo2 Up20.png
EVcouplings 0.0.5 Bioinformatics Sapelo2 Up20.png
EVidenceModeler 0.1.3 Bioinformatics Sapelo2 Up20.png
Exonerate 2.4.0 Bioinformatics Sapelo2 Up20.png
FALCON 02282018_unzip Bioinformatics Sapelo2 Up20.png
Fast-Plast 1.2.6, 1.2.8 Bioinformatics Sapelo2 Up20.png
FASTA 36.3.5e Bioinformatics Sapelo2 Up20.png
fast-GeP 1.0.1 Bioinformatics Sapelo2 Up20.png
FastME 2.1.5 Bioinformatics Sapelo2 Up20.png
FastQC 0.11.5,0.11.8 Bioinformatics Sapelo2 Up20.png
FastQValidator 0.1.1a Bioinformatics Sapelo2 Up20.png
FastQ_Screen 0.14.0 Bioinformatics Sapelo2 Up20.png
FastSTRUCTURE 1.0 Bioinformatics Sapelo2 Up20.png
FastTree 2.1.10 Bioinformatics Sapelo2 Up20.png
FastViromeExplorer 20180918 Bioinformatics Sapelo2 Up20.png
FASTX-Toolkit 0.0.14 Bioinformatics Sapelo2 Up20.png
FFmpeg 3.1.3, 3.4.1 Other Sapelo2 Up20.png
FFTW 3.3.4, 3.3.6, 3.3.7 Math Library Sapelo2 Up20.png
FIAT 1.6.0 Other Sapelo2 Up20.png
fineSTRUCTURE 2.1.3 Bioinformatics Sapelo2 Up20.png
FLASH 1.2.11 Bioinformatics Sapelo2 Up20.png
FLTK 1.3.4 Other Sapelo2 Up20.png
Flye 2.3.6, 2.6, 2.8.1 Bioinformatics Sapelo2 Up20.png
FoX 4.1.2 Library Sapelo2 Up20.png
Freebayes 1.2.0, 1.3.2 Bioinformatics Sapelo2 Up20.png
freesasa 2.0.3 Bioinformatics Sapelo2 Up20.png
FriBidi 1.0.1 Library Sapelo2 Up20.png
Funannotate 1.5.0 Bioinformatics Sapelo2 Up20.png
FuzzyWuzzy 0.17.0 Other Sapelo2 Up20.png
fxtract 2.3 Bioinformatics Sapelo2 Up20.png
g2gtools 0.2.9 Bioinformatics Sapelo2 Up20.png
GAG 2.0.1 Bioinformatics Sapelo2 Up20.png
GAMESS 14Feb2018 Chemistry Sapelo2 Up20.png
GapFiller 2.1.1 Bioinformatics Sapelo2 Up20.png
GAPIT 20180524 Bioinformatics Sapelo2 Up20.png
GAPPadder 0.1 Bioinformatics Sapelo2 Up20.png
GARLI 2.01 Bioinformatics Sapelo2 Up20.png
GATK 3.4-0, 3.8-0, 3.8-1, 4.0.3.0, 4.0.11.0, 4.1.0.0, 4.1.2.0, 4.1.5.0, 4.1.6.0 Bioinformatics Sapelo2 Up20.png
GAUSSIAN 09, 16 Chemistry Sapelo2 Up20.png
GAUSSIAN 16 Chemistry Teaching Up20.png
GaussView 5, 6.1 Chemistry Sapelo2 Up20.png
GaussView 6.1 Chemistry Teaching Up20.png
GBlocks 0.91b Bioinformatics Sapelo2 Up20.png
GCTA 1.26.0, 1.93.0-beta Bioinformatics Sapelo2 Up20.png
GD 2.66 Bioinformatics Sapelo2 Up20.png
GDAL 2.1.0, 2.2.2 Library Sapelo2 Up20.png
gdc-client 1.3.0 Bioinformatics Sapelo2 Up20.png
Gdk-pixbuf 2.36.0 Library Sapelo2 Up20.png
GEAN 0.1 Bioinformatics Sapelo2 Up20.png
GEM 1.0, 1.1 Bioinformatics Sapelo2 Up20.png
GEM-library 20130406-045632 Bioinformatics Sapelo2 Up20.png
GeneMark.hmm.eukaryotic 4.30 Bioinformatics Sapelo2 Up20.png
GeneMarkES 4.33, 4.57 Bioinformatics Sapelo2 Up20.png
GeneMarkS-T 4.33 Bioinformatics Sapelo2 Up20.png
GeneMarkS 4.30 Bioinformatics Sapelo2 Up20.png
GenericRepeatFinder 1.0 Bioinformatics Sapelo2 Up20.png
GenMap 1.0.1 Bioinformatics Sapelo2 Up20.png
Genocore 2020-05-13 Bioinformatics Sapelo2 Up20.png
Genome Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 Bioinformatics Sapelo2 Up20.png
GenomeTools 1.5.9 Bioinformatics Sapelo2 Up20.png
Genrich 0.5, 0.6 Bioinformatics Sapelo2 Up20.png
GEOS 3.6.2 Library Sapelo2 Up20.png
GET_HOMOLOGUES 1.7.6 Bioinformatics Sapelo2 Up20.png
GET_PHYLOMARKERS 1.2.11, 1.3.1 Bioinformatics Sapelo2 Up20.png
gfaviz 1.0.0 Other Sapelo2 Up20.png
Gffcompare 0.10.4 Bioinformatics Sapelo2 Up20.png
gffread 0.9.12 Bioinformatics Sapelo2 Up20.png
GFlow 0.1.7 Library Sapelo2 Up20.png
Ghostscript 9.20, 9.22 Other Sapelo2 Up20.png
GISTIC 2.0.3 Bioinformatics Sapelo2 Up20.png
Gkin 1.1 Bioinformatics Sapelo2 Up20.png
GL2PS 1.4.0 Library Sapelo2 Up20.png
GLib 2.49.5, 2.53.5, 2.54.3 Library Sapelo2 Up20.png
GLIMMER 3.02b Bioinformatics Sapelo2 Up20.png
GLPK 4.63, 4.65 Programming Sapelo2 Up20.png
GMAP-GSNAP 2016-11-07, 2018-07-04 Bioinformatics Sapelo2 Up20.png
GMP 4.3.2, 6.1.1, 6.1.2 Library Sapelo2 Up20.png
gnuplot 5.0.5 Graphics Sapelo2 Up20.png
GObject-Introspection 1.49.1, 1.54.1 Other Sapelo2 Up20.png
grace 5.1.25 Graphics Sapelo2 Up20.png
GraftM 0.11.1 Bioinformatics Sapelo2 Up20.png
GraphicsMagicK 1.3.28 Other Sapelo2 Up20.png
Graphviz 2.40.1 Other Sapelo2 Up20.png
GROCSVs 0.2.5 Bioinformatics Sapelo2 Up20.png
Gromacs 2016.4, 2018.1 Chemistry Sapelo2 Up20.png
GSL 1.16, 2.1, 2.3. 2.4, 2.5 Math Library Sapelo2 Up20.png
GStreamer 1.14.0 Bioinformatics Sapelo2 Up20.png
GTDBTk 0.2.2, 1.0.2 Bioinformatics Sapelo2 Up20.png
gtftogenepred 377-3 Bioinformatics Sapelo2 Up20.png
GTK+ 2.24.31 Library Sapelo2 Up20.png
GTS 0.7.6 Library Sapelo2 Up20.png
Guile 1.8.8 Other Sapelo2 Up20.png
h5py 2.7.1 Other Sapelo2 Up20.png
HapCUT 0.7 Bioinformatics Sapelo2 Up20.png
HapCUT2 20190606 Bioinformatics Sapelo2 Up20.png
HarfBuzz 1.3.1, 1.7.5 Other Sapelo2 Up20.png
HARP 140925_103521 Bioinformatics Sapelo2 Up20.png
HarvestTools 1.2 Bioinformatics Sapelo2 Up20.png
HH-suite 3.0-beta.3 Bioinformatics Sapelo2 Up20.png
HiC-Pro 2.11.0-beta Bioinformatics Sapelo2 Up20.png
Hinge 0.5.0-4-deb_cv1 Bioinformatics Sapelo2 Up20.png
hindex 1.42 Bioinformatics Sapelo2 Up20.png
HISAT2 2.1.0 Bioinformatics Sapelo2 Up20.png
HISAT2 2.1.0 Bioinformatics Teaching Up20.png
HMMER 2.3, 3.1b2, 3.2.1 Bioinformatics Sapelo2 Up20.png
Homer 4.9.1, 4.10, 4.11 Bioinformatics Sapelo2 Up20.png
HPCGridRunner 1.0.2 Tools Sapelo2 Up20.png
htop 2.0.1 Other Sapelo2 Up20.png
HTSeq 0.9.1 Bioinformatics Sapelo2 Up20.png
HTSlib 1.3.2, 1.6, 1.8 Library Sapelo2 Up20.png
HTStream 1.3.0 Bioinformatics Sapelo2 Up20.png
HUMAnN2 0.11.2 Bioinformatics Sapelo2 Up20.png
HybPiper 1.3.1 Bioinformatics Sapelo2 Up20.png
HyPhy 2.5.15 Bioinformatics Sapelo2 Up20.png
Hypre 2.11.1 Library Sapelo2 Up20.png
ICORN2 0.95 Bioinformatics Sapelo2 Up20.png
IDBA-UD 1.1.3 Bioinformatics Sapelo2 Up20.png
IDR 2.0.2 Bioinformatics Sapelo2 Up20.png
IgBlast 1.16.0 Bioinformatics Sapelo2 Up20.png
IGV 2.4.4 Bioinformatics Sapelo2 Up20.png
IGVTools 2.3.98 Bioinformatics Sapelo2 Up20.png
illumiprocessor 2.0.9 Bioinformatics Sapelo2 Up20.png
ImageMagick 7.0.5, 7.0.7 Other Sapelo2 Up20.png
Infernal 1.1.2 Bioinformatics Sapelo2 Up20.png
IonCom 20190521 Bioinformatics Sapelo2 Up20.png
iprscan (InterProScan) 5.29-68.0, 5.31-70.0, 5.32-71.0, 5.41-78.0, 5.44-90.0 Bioinformatics Sapelo2 Up20.png
ipyrad 0.7.24, 0.7.28, 0.7.30, 0.9.19 Bioinformatics Sapelo2 Up20.png
IPython 5.3.0, 6.2.1, 7.5.0 Other Sapelo2 Up20.png
IQ-Tree 1.5.5, 1.6.5, 1.6.12 Bioinformatics Sapelo2 Up20.png
IQ-Tree 1.6.12 Bioinformatics Teaching Up20.png
IRMA 0.6.7, 0.9.3 Bioinformatics Sapelo2 Up20.png
ISGPipeline 0.16.10-3 Bioinformatics Sapelo2 Up20.png
IsONclust 0.0.4 Bioinformatics Sapelo2 Up20.png
IsoSeq3 3.1.2 Bioinformatics Sapelo2 Up20.png
ITSTool 2.0.4 Utility Sapelo2 Up20.png
JAGS 4.3.0 Statistics Sapelo2 Up20.png
JasPer 1.900.1, 2.0.12 Other Sapelo2 Up20.png
Java 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144, 1.8.0_202 Programming Sapelo2 Up20.png
Java 1.8.0_144, 1.8.0_241, 11.0.2 Programming Teaching Up20.png
jcvi 0.8.12 Bioinformatics Sapelo2 Up20.png
Jellyfish 2.2.6 Bioinformatics Sapelo2 Up20.png
JModelTest 2.1.10 Bioinformatics Sapelo2 Up20.png
Juicer 1.5.6 Bioinformatics Sapelo2 Up20.png
Julia 1.3.1 Programming Sapelo2 Up20.png
JUnit 4.12 Other Sapelo2 Up20.png
Jupyter 4.3.0 Other Sapelo2 Up20.png
Kaiju 1.6.2, 1.7.3 Bioinformatics Sapelo2 Up20.png
kallisto 0.43.1, 0.46.0 Bioinformatics Sapelo2 Up20.png
KAT 2.4.1 Bioinformatics Sapelo2 Up20.png
Kent_tools 20190208, 20200512 Bioinformatics Sapelo2 Up20.png
keras 2.0.6, 2.2.2 Other Sapelo2 Up20.png
KinFin 1.0.3 Bioinformatics Sapelo2 Up20.png
KmerGenie 1.7044 Bioinformatics Sapelo2 Up20.png
Kraken2 2.0.7-beta Bioinformatics Sapelo2 Up20.png
KronaTools 2.7 Bioinformatics Sapelo2 Up20.png
LAME 3.100 Other Sapelo2 Up20.png
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LASTZ 1.04.00 Bioinformatics Sapelo2 Up20.png
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LDhelmet 1.10 Bioinformatics Sapelo2 Up20.png
Leafcutter 0.2.8 Bioinformatics Sapelo2 Up20.png
Lep-MAP3 0.2 Bioinformatics Sapelo2 Up20.png
libssh2 1.9.0 Other Sapelo2 Up20.png
LibStatGen 1.0.14 Bioinformatics Sapelo2 Up20.png
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LINKS 1.8.7 Bioinformatics Sapelo2 Up20.png
LittleCMS 2.8 Other Sapelo2 Up20.png
LLVM 3.8.1, 4.0.0, 5.0.1, 6.0.0 Library Sapelo2 Up20.png
LMDB 0.9.22 Bioinformatics Sapelo2 Up20.png
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LongRanger 2.2.2 Bioinformatics Sapelo2 Up20.png
LoRDEC 0.9 Bioinformatics Sapelo2 Up20.png
LoRMA 0.5 Bioinformatics Sapelo2 Up20.png
LRCstats 1.1 Bioinformatics Sapelo2 Up20.png
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LS-DYNA 10.123355 Engineering Sapelo2 Up20.png
LS-PrePost 4.5 Engineering Sapelo2 Up20.png
LtrDetector 1.0 Bioinformatics Sapelo2 Up20.png
LTR_Finder 1.0.7 Bioinformatics Sapelo2 Up20.png
LTR_retriever 1.6 Bioinformatics Sapelo2 Up20.png
LUMPY 0.2.13 Bioinformatics Sapelo2 Up20.png
LZO 2.10 Bioinformatics Sapelo2 Up20.png
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MacSyFinder 1.0.5 Bioinformatics Sapelo2 Up20.png
MACS2 2.1.1, 2.1.2, 2.2.7.1 Bioinformatics Sapelo2 Up20.png
MAFFT 7.273, 7.313, 7.397, 7.407, 7.453, 7.470 Bioinformatics Sapelo2 Up20.png
Magic-BLAST 1.4.0 Bioinformatics Sapelo2 Up20.png
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mahotas 1.4.3 Bioinformatics Sapelo2 Up20.png
MAJIQ 2.1 Bioinformatics Sapelo2 Up20.png
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Maker 3.01.03 Bioinformatics Sap2test Up20.png
Mako 1.0.4, 1.0.7 Other Sapelo2 Up20.png
MAnorm 1.1.4 Bioinformatics Sapelo2 Up20.png
MARVEL 20180918 Bioinformatics Sapelo2 Up20.png
Mash 2.1 Bioinformatics Sapelo2 Up20.png
MashMap 2.0 Bioinformatics Sapelo2 Up20.png
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MaSuRCA 3.2.2, 3.2.9, 3.3.1 Bioinformatics Sapelo2 Up20.png
Mathematica 12.1 Programming Sapelo2 Up20.png
Matlab R2017b, R2018b, R2019b Programming Sapelo2 Up20.png
Matplotlib 1.5.3, 2.0.2, 2.1.0, 2.1.2, 2.2.3, 3.0.0 Other Sapelo2 Up20.png
Mauve 2015-02-13 Bioinformatics Sapelo2 Up20.png
Maven 3.5.2 Bioinformatics Sapelo2 Up20.png
Mawk 1.3.4 Other Sapelo2 Up20.png
MaxBin 2.2.7 Bioinformatics Sapelo2 Up20.png
MCL 14.137 Bioinformatics Sapelo2 Up20.png
MCScanX 0.8 Bioinformatics Sapelo2 Up20.png
Medaka 0.9.0 Bioinformatics Sapelo2 Up20.png
Medusa 1.6 Bioinformatics Sapelo2 Up20.png
MEGA 7.0.26-1 Bioinformatics Sapelo2 Up20.png
MEGAHIT 1.1.1, 1.1.3 Bioinformatics Sapelo2 Up20.png
Megalodon 0.1.0, 1.0.0, 2.2.0 Bioinformatics Sapelo2 Up20.png
MeGAMerge 3.0.1 Bioinformatics Sapelo2 Up20.png
MEME 4.11.0, 5.0.0_1 Bioinformatics Sapelo2 Up20.png
Meraculous 2.2.5 Bioinformatics Sapelo2 Up20.png
Mercurial 4.4.2 Other Sapelo2 Up20.png
Mesa 12.0.2, 17.3.6 Other Sapelo2 Up20.png
MET 7.0 Other Sapelo2 Up20.png
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METABOLIC 3.0 Bioinformatics Sapelo2 Up20.png
MetaCLADE 1.1 Bioinformatics Sapelo2 Up20.png
MetaPhlAn 1.7.7 Bioinformatics Sapelo2 Up20.png
MetaPhlAn2 2.7.8 Bioinformatics Sapelo2 Up20.png
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MG-RAST-Tools 1.1 Bioinformatics Sapelo2 Up20.png
minced 0.2.1 Bioinformatics Sapelo2 Up20.png
Minia 3.2.0 Bioinformatics Sapelo2 Up20.png
miniasm 0.3 Bioinformatics Sapelo2 Up20.png
Miniconda3 4.4.10 Other Sapelo2 Up20.png
minimap2 2.10, 2.13, 2.17 Bioinformatics Sapelo2 Up20.png
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mip 1.7.3 Other Sapelo2 Up20.png
mirdeep-p 1.3 Bioinformatics Sapelo2 Up20.png
miRDeep2 0.0.8 Bioinformatics Sapelo2 Up20.png
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MISO 0.5.4 Bioinformatics Sapelo2 Up20.png
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MITE-Tracker 0.1 Bioinformatics Sapelo2 Up20.png
MITObim 1.9.1 Bioinformatics Sapelo2 Up20.png
MitoZ 2.3 Bioinformatics Sapelo2 Up20.png
mmquant 1.3 Bioinformatics Sapelo2 Up20.png
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Mothur 1.39.5 Bioinformatics Sapelo2 Up20.png
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MREPS 1.0.5 Bioinformatics Sapelo2 Up20.png
MSG 0.4.9 Bioinformatics Sapelo2 Up20.png
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MultiQC 1.5 Bioinformatics Sapelo2 Up20.png
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muver 0.1.0 Bioinformatics Sapelo2 Up20.png
mvqtlcim 1.0 Bioinformatics Sapelo2 Up20.png
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Nanocorr 5.9 Bioinformatics Sapelo2 Up20.png
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NanoPlot 1.26.3 Bioinformatics Sapelo2 Up20.png
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NASM 2.11, 2.12, 2.13 Other Sapelo2 Up20.png
NBO 7.0 Chemistry Sapelo2 Up20.png
NCCL 2.4.2 Other Sapelo2 Up20.png
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ncview 2.1.7 Graphics Sapelo2 Up20.png
NCO 4.7.4 Other Sapelo2 Up20.png
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NeEstimator 2.1 Bioinformatics Sapelo2 Up20.png
Neptune 1.2.5 Bioinformatics Sapelo2 Up20.png
NetSurfP 2.0 Bioinformatics Sapelo2 Up20.png
Newbler 3.0 Bioinformatics Sapelo2 Up20.png
Nextflow 18.10.1 Bioinformatics Sapelo2 Up20.png
NextGenMap 0.5.5 Bioinformatics Sapelo2 Up20.png
ngmlr 0.2.6-beta Bioinformatics Sapelo2 Up20.png
NGmerge 0.3 Bioinformatics Sapelo2 Up20.png
NGS 1.3.0 Bioinformatics Sapelo2 Up20.png
NGSEPcore 3.3.2 Bioinformatics Sapelo2 Up20.png
ngsplot 2.6.3 Bioinformatics Sapelo2 Up20.png
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nistats 0.0.1a0 Other Sapelo2 Up20.png
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Nseg 20180530 Bioinformatics Sapelo2 Up20.png
NucleoATAC 0.3.4 Bioinformatics Sapelo2 Up20.png
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Ont-Guppy 3.2.4, 4.0.11, 4.0.15 Bioinformatics Sapelo2 Up20.png
OpenBUGS 3.2.3 Statistics Sapelo2 Up20.png
OpenCV 3.4.1, 3.4.7 Other Sapelo2 Up20.png
OpenJPEG 2.3.0 Other Sapelo2 Up20.png
OpenSlide 3.4.1 Other Sapelo2 Up20.png
OpenSlide-Python 1.1.1 Other Sapelo2 Up20.png
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OrfM 0.6.1 Bioinformatics Sapelo2 Up20.png
OrganelleRef_PBA 1.0.8 Bioinformatics Sapelo2 Up20.png
ORGanelle_ASeMbler 0.2.03 Bioinformatics Sapelo2 Up20.png
ORGASM 0.2.03 Bioinformatics Sapelo2 Up20.png
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OrthoMCL 2.0.9 Bioinformatics Sapelo2 Up20.png
p7zip 16.02 Other Sapelo2 Up20.png
PAGIT 1.64 Bioinformatics Sapelo2 Up20.png
Pairix 0.3.7 Bioinformatics Sapelo2 Up20.png
pairtools 0.3.0 Bioinformatics Sapelo2 Up20.png
Pal_finder 0.02.04 Bioinformatics Sapelo2 Up20.png
PAML 4.9h Bioinformatics Sapelo2 Up20.png
PAML 4.9i Bioinformatics Teaching Up20.png
PANDAseq 2.5 Bioinformatics Sapelo2 Up20.png
Pangloss 0.9.1 Bioinformatics Sapelo2 Up20.png
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Panoply 4.11.6 Graphics Sapelo2 Up20.png
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Parsnp 1.2 Bioinformatics Sapelo2 Up20.png
PartitionFinder 2.1.1 Bioinformatics Sapelo2 Up20.png
PanOCT 3.23 Bioinformatics Sapelo2 Up20.png
PASA 2.3.3 Bioinformatics Sapelo2 Up20.png
PASTA 1.8.2 Bioinformatics Sapelo2 Up20.png
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Pb-assembly 0.0.2, 0.0.8 Bioinformatics Sapelo2 Up20.png
pbh5tools 0.8.0 Bioinformatics Sapelo2 Up20.png
PBLAT 2.0.0 Bioinformatics Sapelo2 Up20.png
pbmm2 1.0.0, 1.3.0 Bioinformatics Sapelo2 Up20.png
pcawg-dkfz-workflow 2.2.0 Bioinformatics Sapelo2 Up20.png
PBSuite 15.8.24 Bioinformatics Sapelo2 Up20.png
PCRE 8.38, 8.39, 8.41 Library Sapelo2 Up20.png
PeakRanger 1.18 Bioinformatics Sapelo2 Up20.png
PEAR 0.9.8 Bioinformatics Sapelo2 Up20.png
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Perl 5.30.0 Programming Teaching Up20.png
PETSc 3.8.4 Math Library Sapelo2 Up20.png
PGDBG 18.10 Debugger Sapelo2 Up20.png
PGDSpider 2.1.1.5 Bioinformatics Sapelo2 Up20.png
PhaseGenomics 20181220 Bioinformatics Sapelo2 Up20.png
phaser 1.2.0 Bioinformatics Sapelo2 Up20.png
PhaseTank 1.0 Bioinformatics Sapelo2 Up20.png
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PHENIX 1.18.2-3874 Bioinformatics Sapelo2 Up20.png
Phobius 1.01 Bioinformatics Sapelo2 Up20.png
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PHYLIP 3.697 Bioinformatics Sapelo2 Up20.png
PhyloBayes-MPI 20161021 Bioinformatics Sapelo2 Up20.png
PhyloCSF 20180919 Bioinformatics Sapelo2 Up20.png
PhyloSift 1.0.1 Bioinformatics Sapelo2 Up20.png
PhyloSkeleton 1.1 Bioinformatics Sapelo2 Up20.png
Phyluce 1.6.1 Bioinformatics Sapelo2 Up20.png
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PhyParts 0.0.1 Bioinformatics Sapelo2 Up20.png
picard 2.16.0, 2.21.6 Bioinformatics Sapelo2 Up20.png
PICRUSt 1.1.3, 2.3.0 Bioinformatics Sapelo2 Up20.png
pigz 2.3.3 Other Sapelo2 Up20.png
PIL 1.1.7 Library Sapelo2 Up20.png
PILER 2.5 Bioinformatics Sapelo2 Up20.png
Pilon 1.22 Bioinformatics Sapelo2 Up20.png
PlantCV 3.8.0 Bioinformatics Sapelo2 Up20.png
Platypus 0.8.1 Bioinformatics Sapelo2 Up20.png
PLEK 1.2 Bioinformatics Sapelo2 Up20.png
PLINK 1.07, 1.9b, 2.0-alpha1, 2.0-alpha2, 2.0-alpha2.3 Bioinformatics Sapelo2 Up20.png
Plmc 0.1 Bioinformatics Sapelo2 Up20.png
Porechop 0.2.4 Bioinformatics Sapelo2 Up20.png
PoSSuMsearch 2.0 Bioinformatics Sapelo2 Up20.png
Pplacer 1.1.alpha19 Bioinformatics Sapelo2 Up20.png
Praat 6048-Linux64-nogui Other Sapelo2 Up20.png
PRANK 170427 Bioinformatics Sapelo2 Up20.png
PRAPI 2.0 Bioinformatics Sapelo2 Up20.png
Primer3 2.3.7 Bioinformatics Sapelo2 Up20.png
PRINSEQ 0.20.4 Bioinformatics Sapelo2 Up20.png
ProbABEL 0.5.0 Bioinformatics Sapelo2 Up20.png
Prodigal 2.6.3 Bioinformatics Sapelo2 Up20.png
progressiveCactus 0.1 Bioinformatics Sapelo2 Up20.png
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PROJ 4.9.2 Other Sapelo2 Up20.png
Prokka 1.13, 1.14.6 Bioinformatics Sapelo2 Up20.png
proovread 2.14.1 Bioinformatics Sapelo2 Up20.png
protobuf 3.3.0, 3.4.0, 3.6.0 Other Sapelo2 Up20.png
PSI4 1.3.2 Chemistry Sapelo2 Up20.png
psmc 0.6.5 Bioinformatics Sapelo2 Up20.png
pVACtools 1.5.10 Bioinformatics Sapelo2 Up20.png
pyani 0.2.10 Bioinformatics Sapelo2 Up20.png
pybedtools 0.7.10 Bioinformatics Sapelo2 Up20.png
PyCUDA 2019.1.2 Other Sapelo2 Up20.png
pyDNA 0.1 Bioinformatics Sapelo2 Up20.png
pydub 0.22.1 Other Sapelo2 Up20.png
pyfasta 0.5.2 Bioinformatics Sapelo2 Up20.png
PyMOL 2.3.0a0 Graphics Sapelo2 Up20.png
pyNBS 0.2.0 Bioinformatics Sapelo2 Up20.png
PyPy 6.0.0 (2.7.14) Programming Sapelo2 Up20.png
Pysam 0.10.0, 0.13.0, 0.14.1 Bioinformatics Sapelo2 Up20.png
Python 2.7.12, 2.7.14, 3.5.2, 3.6.4, 3.7.0, 3.7.2, 3.7.4, 3.8.2 Programming Sapelo2 Up20.png
Python 3.7.4, 2.7.16 Programming Teaching Up20.png
PyTorch 0.3.1, 1.0.0, 1.2.0, 1.3.1 Other Sapelo2 Up20.png
pyvcf 0.6.8 Bioinformatics Sapelo2 Up20.png
q2-brocc 2018.6.0.dev0 Bioinformatics Sapelo2 Up20.png
QCTOOL 2.0.6 Bioinformatics Sapelo2 Up20.png
qiaseq-16S 20190306 Bioinformatics Sapelo2 Up20.png
QIIME2 2018.2, 2018.4, 2018.6, 2018.8, 2018.11, 2019.1, 2020.6 Bioinformatics Sapelo2 Up20.png
QIIME 1.9.1 Bioinformatics Sapelo2 Up20.png
QTLcartographer 1.17j Bioinformatics Sapelo2 Up20.png
Qualimap2 2.2.1 Bioinformatics Sapelo2 Up20.png
Quantum Espresso 6.2.0, 6.3.0-QMCPACK-3.6.0-patch, 6.4.1, 6.5 Chemistry Sapelo2 Up20.png
QUAST 4.2, 4.6.1, 4.6.3, 5.0.0, 5.0.2 Bioinformatics Sapelo2 Up20.png
QMCPACK 3.6.0 Chemistry Sapelo2 Up20.png
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racon 20180406, 1.3.2, 1.4.7 Bioinformatics Sapelo2 Up20.png
RaGOO 1.1 Bioinformatics Sapelo2 Up20.png
randfold 2.0.1 Bioinformatics Sapelo2 Up20.png
RATT 20180710 Bioinformatics Sapelo2 Up20.png
RAxML-NG 0.7.0 Bioinformatics Sapelo2 Up20.png
RAxML 8.2.4, 8.2.11 Bioinformatics Sapelo2 Up20.png
RAxML 8.2.12 Bioinformatics Teaching Up20.png
Ray 2.3.1 Bioinformatics Sapelo2 Up20.png
Rcorrector 1.0.2 Bioinformatics Sapelo2 Up20.png
Realphy 1.1.2 Bioinformatics Sapelo2 Up20.png
REAPR 1.0.18 Bioinformatics Sapelo2 Up20.png
RECON 1.08 Bioinformatics Sapelo2 Up20.png
RedDog 1beta.11 Bioinformatics Sapelo2 Up20.png
Redundans 0.14a Bioinformatics Sapelo2 Up20.png
RepeatExplorer-TAREAN 11/09/2018 Bioinformatics Sapelo2 Up20.png
RepeatMasker 4.0.5, 4.0.7, 4.0.9 Bioinformatics Sapelo2 Up20.png
Repeatmodeler 1.0.11, 2.0.1 Bioinformatics Sapelo2 Up20.png
RepeatScout 1.05 Bioinformatics Sapelo2 Up20.png
REPET 2.5 Bioinformatics Sapelo2 Up20.png
RESCRIPt 20200805 Bioinformatics Sapelo2 Up20.png
RevBayes 1.0.10 Bioinformatics Sapelo2 Up20.png
RGAugury 20191115 Bioinformatics Sapelo2 Up20.png
rjags 4.6 Other Sapelo2 Up20.png
RMBlast 2.6.0 Bioinformatics Sapelo2 Up20.png
Rmpi 0.6-6 Programming Sapelo2 Up20.png
RNAmmer 1.2 Bioinformatics Sapelo2 Up20.png
RNAz 2.1 Bioinformatics Sapelo2 Up20.png
Roary 3.12.0 Bioinformatics Sapelo2 Up20.png
Rosetta 2017.45.59812, 2019.47.61047 Chemistry Sapelo2 Up20.png
RSEM 1.3.0, 1.3.1 Bioinformatics Sapelo2 Up20.png
RSeQC 3.0.0 Bioinformatics Sapelo2 Up20.png
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Ruby 2.5.0 Programming Sapelo2 Up20.png
runBNG 1.03 Bioinformatics Sapelo2 Up20.png
Sailfish 0.10.1 Bioinformatics Sapelo2 Up20.png
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SalmonTools 0.1 Bioinformatics Sapelo2 Up20.png
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samblaster 0.1.24 Bioinformatics Sapelo2 Up20.png
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SANN 20190528 Bioinformatics Sapelo2 Up20.png
sbt 1.1.1 Programming Sapelo2 Up20.png
scala 2.12.4 Programming Sapelo2 Up20.png
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SCons 2.5.0 Other Sapelo2 Up20.png
SCOTCH 6.0.4 Other Sapelo2 Up20.png
scram 0.2.2 Bioinformatics Sapelo2 Up20.png
screen_assembly 1.2.7 Bioinformatics Sapelo2 Up20.png
SeaDAS 7.5.3 Graphics Sapelo2 Up20.png
seaview 4.7 Bioinformatics Sapelo2 Up20.png
selscan 1.3.0 Bioinformatics Sapelo2 Up20.png
Seq-Gen 1.3.4 Bioinformatics Sapelo2 Up20.png
SeqKit 0.10.1, 0.10.2 Bioinformatics Sapelo2 Up20.png
seqqs 20140225 Bioinformatics Sapelo2 Up20.png
seqtk 1.2 Bioinformatics Sapelo2 Up20.png
SGA 0.10.15 Bioinformatics Sapelo2 Up20.png
Shannon 20190826 Bioinformatics Sapelo2 Up20.png
shapeit v2.r904 Bioinformatics Sapelo2 Up20.png
Shasta 0.2.0 Bioinformatics Sapelo2 Up20.png
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Sibelia 3.0.7 Bioinformatics Sapelo2 Up20.png
SICER 1.1 Bioinformatics Sapelo2 Up20.png
SICERpy 0.1 Bioinformatics Sapelo2 Up20.png
Sickle 1.33 Bioinformatics Sapelo2 Up20.png
SignalP 4.1f Bioinformatics Sapelo2 Up20.png
Silix 1.2.9 Bioinformatics Sapelo2 Up20.png
SimLoRD 1.0.2 Bioinformatics Sapelo2 Up20.png
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SNAP-Zoe 20060728 Bioinformatics Sapelo2 Up20.png
Sniffles 1.0.8 Bioinformatics Sapelo2 Up20.png
SnoReport 2.0 Bioinformatics Sapelo2 Up20.png
Snippy 4.4.1 Bioinformatics Sapelo2 Up20.png
SNP-ML 1.3.0 Bioinformatics Sapelo2 Up20.png
snpEff 4.3t Bioinformatics Sapelo2 Up20.png
SNPhylo 20160204 Bioinformatics Sapelo2 Up20.png
snp-sites 2.5.1 Bioinformatics Sapelo2 Up20.png
SOAPaligner 2.21 Bioinformatics Sapelo2 Up20.png
SOAPdenovo2 r240 Bioinformatics Sapelo2 Up20.png
somaticseq 3.4.1 Bioinformatics Sapelo2 Up20.png
SOP-GPU 20180404 Bioinformatics Sapelo2 Up20.png
SortMeRNA 2.1, 3.0.3 Bioinformatics Sapelo2 Up20.png
SoX 14.4.2 Other Sapelo2 Up20.png
SPAdes 3.11.1, 3.12.0, 3.14.0 Bioinformatics Sapelo2 Up20.png
spams 2.6.1 Other Sapelo2 Up20.png
Spanki 0.5.1 Bioinformatics Sapelo2 Up20.png
Spark 2.2.1 Other Sapelo2 Up20.png
Speciesprimer 2.1.2 Bioinformatics Sapelo2 Up20.png
SpeedSeq 0.1.2 Bioinformatics Sapelo2 Up20.png
Spine 0.3.2 Bioinformatics Sapelo2 Up20.png
SpliceGrapher 0.2.5 Bioinformatics Sapelo2 Up20.png
Splitstree4 4.16.0 Bioinformatics Sapelo2 Up20.png
SPM 12 Other Sapelo2 Up20.png
SRAToolKit 2.8.2-1, 2.9.1 Bioinformatics Sapelo2 Up20.png
sRNAWorkbench 4.5 Bioinformatics Sapelo2 Up20.png
SSAHA2 2.5.5 Bioinformatics Sapelo2 Up20.png
SSPACE 2.1.1 Bioinformatics Sapelo2 Up20.png
Stacks 1.48, 2.2, 2.3, 2.3b, 2.3d, 2.3e Bioinformatics Sapelo2 Up20.png
Stampy 1.0.31 Bioinformatics Sapelo2 Up20.png
STAR-Fusion 1.5.0 Bioinformatics Sapelo2 Up20.png
STAR 2.5.3a, 2.6.0c, 2.6.1c, 2.7.1a Bioinformatics Sapelo2 Up20.png
StrAuto 1.0 Bioinformatics Sapelo2 Up20.png
StringTie 1.3.3, 1.3.4d, 2.0.3, 2.0.6 Bioinformatics Sapelo2 Up20.png
StringTie 2.1.1 Bioinformatics Teaching Up20.png
Structure 2.3.4 Bioinformatics Sapelo2 Up20.png
Subread 1.6.2 Bioinformatics Sapelo2 Up20.png
SUNTANS 20180305 Other Sapelo2 Up20.png
Supernova 2.0.1, 2.1.1 Bioinformatics Sapelo2 Up20.png
SUPPA 2.3 Bioinformatics Sapelo2 Up20.png
SVDetect 0.7 Bioinformatics Sapelo2 Up20.png
svtools 0.5.1 Bioinformatics Sapelo2 Up20.png
SWIG 3.0.12 Bioinformatics Sapelo2 Up20.png
Synima 20181205 Bioinformatics Sapelo2 Up20.png
Tabix 0.2.6 Bioinformatics Sapelo2 Up20.png
TASSEL 5.2.44 Bioinformatics Sapelo2 Up20.png
Tbl2asn 04172018, 03282019, 05012020 Bioinformatics Sapelo2 Up20.png
TCSF_IMRA 1.3 Bioinformatics Sapelo2 Up20.png
TensorFlow-models 20180620 Other Sapelo2 Up20.png
TensorFlow 1.8.0, 1.10.1, 1.12.0, 1.14 Other Sapelo2 Up20.png
Theano 0.9.0, 1.0.2 Other Sapelo2 Up20.png
TigMint 1.1.2 Bioinformatics Sapelo2 Up20.png
TMHMM 2.0c Bioinformatics Sapelo2 Up20.png
tmux 2.9 Other Sapelo2 Up20.png
Tombo 1.5 Bioinformatics Sapelo2 Up20.png
Tophat 2.1.0, 2.1.1 Bioinformatics Sapelo2 Up20.png
torchvision 0.5.0 Other Sapelo2 Up20.png
TPP 5.1.0 Bioinformatics Sapelo2 Up20.png
tqdm 4.43.0, 4.44.1 Other Sapelo2 Up20.png
TransDecoder 2.1.0, 5.3.0, 5.5.0 Bioinformatics Sapelo2 Up20.png
Transposome 0.12.1 Bioinformatics Sapelo2 Up20.png
Transrate 1.0.3 Bioinformatics Sapelo2 Up20.png
Transrate 1.0.3 Bioinformatics Sapelo2 Up20.png
TreeMix 1.13 Bioinformatics Sapelo2 Up20.png
TreeTime 0.6.3 Bioinformatics Sapelo2 Up20.png
TrimAl 1.4.1 Bioinformatics Sapelo2 Up20.png
Trimmomatic 0.36 Bioinformatics Sapelo2 Up20.png
Trim_Galore 0.4.5, 0.6.5 Bioinformatics Sapelo2 Up20.png
Trinity r20140717, 2.5.1, 2.6.6, 2.8.4 Bioinformatics Sapelo2 Up20.png
Trinotate 3.1.1, 3.2.1 Bioinformatics Sapelo2 Up20.png
TRNAscan-SE 2.0.0 Bioinformatics Sapelo2 Up20.png
UCLUST 1.2.22q Bioinformatics Sapelo2 Up20.png
ucsc 359 Bioinformatics Sapelo2 Up20.png
UMI-tools 1.0.1 Bioinformatics Sapelo2 Up20.png
UPP 3.2 Other Sapelo2 Up20.png
USEARCH 10.0.240 Bioinformatics Sapelo2 Up20.png
Unicycler 0.4.7 Bioinformatics Sapelo2 Up20.png
VarScan 2.4.2 Bioinformatics Sapelo2 Up20.png
VCF-kit 0.1.6 Bioinformatics Sapelo2 Up20.png
vcf2diploid 0.2.6a Chemistry Sapelo2 Up20.png
vcf2maf 20200520 Bioinformatics Sapelo2 Up20.png
vcf2phylip 1.5 Bioinformatics Sapelo2 Up20.png
vcflib 20180410 Bioinformatics Sapelo2 Up20.png
VCFtools 0.1.15 Bioinformatics Sapelo2 Up20.png
Velvet 1.2.10 Bioinformatics Sapelo2 Up20.png
VelvetOptimiser 2.2.5, 2.2.6 Bioinformatics Sapelo2 Up20.png
ViennaRNA 2.4.3, 2.4.6 Bioinformatics Sapelo2 Up20.png
ViewBS 0.1.7, 0.1.9 Bioinformatics Sapelo2 Up20.png
Vmatch 2.3.0 Bioinformatics Sapelo2 Up20.png
VSEARCH 2.8.1 Bioinformatics Sapelo2 Up20.png
WGS 8.3rc2 Bioinformatics Sapelo2 Up20.png
WASP 0.3.4 Bioinformatics Sapelo2 Up20.png
WebLogo 3.6.0 Bioinformatics Sapelo2 Up20.png
WEKA 3.8.3 Other Sapelo2 Up20.png
WPS 3.8 Other Sapelo2 Up20.png
WRF-Chem 3.6.1, 3.8.0 Other Sapelo2 Up20.png
WRF-Fire 20170221 Other Sapelo2 Up20.png
WRF 3.6.1, 3.8.0 Other Sapelo2 Up20.png
WU Blast 2.2.6 Bioinformatics Sapelo2 Up20.png
xforms 1.2.4 Graphics Sapelo2 Up20.png
YASRA 2.33 Bioinformatics Sapelo2 Up20.png

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